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Properties
| Property Name | Value |
|---|
| Product | autophagy protein 16 |
| Orig transcript id | gnl|cribi|Naga_100021g25.8798.mrna |
| Orig protein id | gnl|cribi|Naga_100021g25.8798 |
| Gene | tipD |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002464.1 | supercontig | CM002464.1:500738..503010 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4853 ID=rna4853|Name=rna4853|organism=Nannochloropsis gaditana|type=mRNA|length=2595bp
CATCCCACAGAACACTTGTGCCTGTTTCCAAAACATTGGACCTGTGCGTC
CGTCAGAAAGAATTATATTTGAGGCCGAAGGTGTCCCTTAAAGTACTCAG
AGGCATGTAAGCGGGACGAGACTTGTCACTTTCTCCCCGGCACGTGCCTT
GATACGTGCGTGATGTGACATGTCAAACATTGAAGCAAGTTGGGCCTCCT
CACGGACTATCGTTTTCACCACACGTGAGCGCCGCAAGTTAGTTTAAGAG
CAAGAGTATGATAAACACCTGTTGTTCTTATTTATCTCAAACATTTCTAT
TCTCAATACGAAAGGTAAAGCAAAAAGCTTGGATTATAAACCAACAGGAA
CGTGCTACGATCCACTTCAACACTGAGTCCAAGGTCCATCTATCGATTGT
TAGTCGGCACATAATTTACTCTTTAACTCATGCTGTGCGGGCTGTTTCTT
GAGCATTTAACACTGAAAGACTTCGTGTGGGAGGCCCCTGGGACAAATAA
GGCGGCGATCAAAGCTATGTCGGCCCCGTTGTGGATGGGGCTCTTGTCCG
CCTACACGCTCGTCATCTTCTTGTCCCTGCTCACGGCAGGCGTGGTCTCG
AAGATCGTCCCCTCACTTGTTACACCATTATTTCATTCTTTTTTTGAGAG
AGCGGCACCTGAAGATTTCTTCCGTCCTCAGCCGTTGCGGGGCGAGCAGC
AGGCATCTTTCACGCCCAGTCCCTCTGTGAAGACTGTCGGGGCCCTGACG
ACGCCTCGCTCGGCGAATGGTGATGGGAAAATGCTGGCGCAATGATGTTT
GATTTTTGTTTACGAGTGTGATCATGGCCTAATGACGAGAGGTTGGAGAT
AGCGCTCTTGGGAGGTAACGATTCTTTACGGTGCCGGCACAAAGCTTGGC
TTGATATGACGGGACAGGAGGATGGGGCGATAAAAATGCTTGTCAGACAT
GTCCCTTGGCATATGGAGGCAAAAAGGAAGTAGGGGGCCTCGTAAGGTTT
GGTGGCCGGGTGCAGTAGTAGTGTAAGCGGTCGGACCGACATACACTGTC
TCCTGGCAGGTTGATGGACTGAGAGATGTATGGGAGACGCTTGCAAATTT
AGCATGGCAGCGTGAAAAGGAAAAAGAGACTCATGTGCAGGGCATGTAAA
TAAAAAATGAGGGCACCGCGCAATCGGGAAGTGGACGACATACAATCGTT
GGCGAGAAGCAAGGCGAGCAAGAAGACGGACGTCCCAGGTCCAGGCAAGC
CATGAGGATCAGTGGAATGTGACAAGTCAAACCCACAGTCCTTTCCAGAT
TAGACTCACGGGGCTATTGATTAAATTTATAAACATTTGGGATTGCTTTG
CACGTGGGCCGGCCCCGTGAAACATGCTGCACTATGAAACTGTTGCGGGT
GTGGTCGCGTCTGTACTGTTGTTGCTTGCCCCCTCGCTCTTGAGCGACAC
AGACAGCTCCTGGAAGATGGGCCTTTCTTCGTATTGCCGCCGCCGCTTCC
GATCCTGCTCCTCCTCCTCGAGCAGGGCGCCCCTCTCCATCTTGCGCTTC
TTCACGCCCTGGAGGTAGTCGAAGAAGAGGCGGCCGGCCTCCGAGTCGTC
CCCGCACCAGCGTGTCAGGACCTTGAGGCTCGCCATGACCAGCAACTGCC
CCGCCTTGAAGGCGCTCTCTCGCTCTACCTCCCTCGTGTCCCCCTCCCCC
TCTGTCGGAGCCTGCCCGTCCCCCGAGCCCTCACCGTCCGAGCCGCTCTC
CTTGCCCGACTGAGACCGCATCTCGGCCTGCAAACCAGCACAAACCCCGT
CCACGGCCGCCTGCTGGTAAGGCGCCCCTTCAGATACCCACAAAAGCAAT
CGTCGCGTCTCCGCCAGACCCATCTTGGCCACATCCGGGTCTGCTGCCGC
CTCGCAGCTTGCCTTTCGCCAGCTCTGAGGCCGGCCTCCGCCGTGCGACC
TGCCTCCCGCCCCCGCCGAATGCTCCAAACTGCCTTCCATGCTATCGCTG
CTGCCCGCGGGCCCCGTGCTCACCACGCAGTGCTTCTCCGCGTCGCGCTT
GACAGTGAAGCCCCTTAGGCCGCAGCCCGGGCACGCAAATGCGAAGGTCA
CGCCGCTGCCGTCCGAGCCTTCCTCTACCAGGACCTCTAAATGCGCAGCT
ATCAAGCATGCAGCCACCACGGCCTCAAAATCAAAGAGGCGATCCCGAGC
GTCTCGGTAGGCGGCGAAGAGCTCGGCAGCCTTCTTTCGGACAAGCCCGT
GCAAAGCCAAGTTGGCACCTTGCTCACGCATGATCCGGAAGGCCTTGGAT
TTCTGATCGTCCTTGTACTCCACACGTGTAGCCATCGTCCCCCCCACCGC
CGCCCCGTCCCGCCCGATGTTGCTGACACTGAAATCGGTCTCCCGACCTG
TGTTGCGTTTCTGACCGCGCAGACCCGTAAATTGCGTGCCCAGGTTGTAT
GACGCCGAGTAAAGAGGGTTCAAAGCAGGACCGTGATGCGAGCGATCCTC
CTCTCCCGCGAAATTCCGGTACATCTCGCCCTCATGGATCACGTAGTCTG
ACTGACAGTCCCCGCACCGCATGCAAGCGACGGCCCCCCCTCGGC back to topprotein sequence of rna4853 >rna4853-protein ID=rna4853-protein|Name=rna4853|organism=Nannochloropsis gaditana|type=polypeptide|length=601bp
MTGPSTRNSSSLTAAHWRTSVLNALKQQNDVEVEPFRGIILSYTDLARQN
QVLKAHVDHQEKELVTLRHEALEQRDSKGQGGAGACGAKDEQTRKLQSKV
QRLQEELTDKLRLEVQGTTSQLNMSKEIQDLFQKWQLSRAEAEKLRTEVD
GFRAREATLEAQAGMATRDLEIVQEELKRVRARLNTVEKEYLDVRRQNEE
LVRRMVGEKSHNAEEMNRMTELVERMRAQLKARNLEIESTQAVAADVEIE
AVPSSGLRTDELPSHCNQQFRAHAADVNDLVYCDTGQWLATAGGDGKVRV
WEAGSGRLKATLHGQDVMLGLDFRGDFVVGGSSDHTCKLWSLASGRLHRT
FVGHSGNVYAVKLIAGDLRAVLTGGADRTIRLWDVGRASCRQILRSGSTC
NGLDIGMDGHAPVSAHQDGGLRFWDLRAGNPTMIVRAFETQATSVQYGQN
FTALANSRDNALKIIDTRTFETLHVLRHEDYRTFLNWSRACFSPSSSYVA
AGSATGQLFVWETASGEMKSILSHAPDSRHSFSSSPEHDELRCQGMSLSA
SGDRIRTSSEALDGSTSGAGQRGGGGGIISCAWKASRLSACTRSGNVCIW
S back to topmRNA from alignment at CM002464.1:500738..503010+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4853 ID=rna4853|Name=rna4853|organism=Nannochloropsis gaditana|type=mRNA|length=2273bp|location=Sequence derived from alignment at CM002464.1:500738..503010+ (Nannochloropsis gaditana)
AGGGAGAAGGATACTTATCGCCCTAAGACACCCTTCGTAATGATTAGTAG
CTGTTGGCCCTACGATTTATTCTTTGACCCACCTTCTTGATGACGGGGCC
ATCTACGCGAAATTCGTCCTCGCTCACGGCGGCGCACTGGCGGACCAGCG
TCTTGAACGCTTTGAAGCAGCAAAACGATGTGGAGGTCGAGCCATTTCGT
GGGATTATTCTAAGCTGTAAGTTCTACGCACTGATCAGTCACATTACCCT
TGAATGTCTATAGGTTATATCATCATTTCGAAACATTGATGATGAAATTG
CTGGGAAGTGTTCGGTTCATTGTAATTTACAGGGGGAAGCCACACAGCTG
TCGCCTGCATTTCTAACTTCCTGTTGCCACTTGCTTATCATGTTGTCCAC
GGACTCACGCTGTACACGCTTGTACGCTTGCAAGTCACGTGCACGTGCAT
CTTTGGGCGGGTCGATGAaactctttccctttctctttccttcgtccCGA
CTACGCGCTATATGTCAGATACGGACCTTGCTCGGCAAAACCAAGTCCTC
AAGGCCCATGTGGATCATCAGGAAAAAGAGTTGGTCACACTGCGACATGA
AGCATTAGAGCAGAGGGACAGCAAGggccaagggggggcaggtgcGTGCG
GTGCCAAGGACGAGCAGACAAGGAAGCTGCAGAGCAAGGTCCAACGCTTG
CAAGAAGAGCTTACCGACAAGTTGCGTCTGGAGGTGCAAGGGACAACTTC
ACAGCTCAATATGAGTAAGGAAATACAAGATTTGTTCCAAAAGTGGCAGC
TTTCTCGAGCAGAAGCTGAAAAGTTGAGGACGGAGGTCGACGGGTTCCGG
GCGCGAGAGGCTACGTTGGAGGCTCAGGCGGGTATGGCGACACGGGACCT
GGAGATAGTCCAGGAGGAGTTGAAGCGTGTCCGGGCACGCTTGAACACTG
TGGAAAAAGAGTACTTGGATGTACGTCGCCAGAACGAAGAGCTGGTGCGG
CGGATGGTTGGGGAAAAGTCTCACAACGCGGAGGAAATGAATCGCATGAC
GGAGCTCGTTGAGCGGATGCGCGCACAGCTCAAGGCCCGAAACTTGGAGA
TTGAGAGCACTCAAGCAGTGGCCGCGGATGTAGAAATTGAGGCGGTACCA
TCTTCGGGGCTGAGGACTGACGAGCTACCCTCCCACTGCAACCAGCAGTT
CCGAGCGCACGCTGCCGACGTGAACGACCTGGTCTACTGCGATACGGGCC
AGTGGCTGGcgacggcgggcggggacggcaaAGTGCgggtgtgggaggcg
ggaagtgGGCGATTGAAAGCAACGCTGCATGGTCAGGACGTGATGCTCGG
CTTAGACTTCCGCGGGGACTTTGTGGTTGGGGGGAGCAGCGATCATACGT
GTAAGCTATGGAGTCTCGCCTCCGGGCGCTTGCACCGCACTTTCGTGGGC
CATTCGGGCAACGTTTACGCGGTCAAGTTGATCGCTGGGGACTTGAGGGC
GGTTCTGACAGGAGGAGCTGACCGCACGATTCGGCTGTGGGACGTAGGGC
GGGCGAGTTGTCGGCAAATTCTGCGCTCTGGCTCGACCTGCAACGGTTTA
GACATCGGAATGGACGGTCACGCGCCCGTGTCGGCGCATCAGGATGGCGG
TCTCCGTTTCTGGGACCTGCGTGCTGGCAATCCCACTATGATCGTGCGCG
CCTTCGAGACGCAAGCTACGTCGGTACAGTACGGACAAAACTTTACCGCC
CTCGCAAACTCCCGTGACAACGCCTTGAAGATCATCGACACGAGGACATT
CGAGACACTCCACGTGCTGCGCCACGAGGACTATCGAACCTTCTTAAATT
GGTCCAGGGCTTGTTTCTCCCCGTCCAGTTCCTACGTCGCTGCAGGATCG
GCCACTGGCCAGCTTTTTGTCTGGGAAACAGCTTCAGGCGAAATGAAATC
GATCCTTTCTCACGCGCCGGACTCGAGGcattccttttcttcttcgccag
aACATGATGAGCTGAGATGTCAAGGCATGTCCCTCTCGGCTTCGGGAGAC
AGGATCAGAACGAGCAGTGAGGCTTTGGACGGGAGTACAAGTGGCGCTGG
TcaaaggggtggaggaggaggtatcATAAGCTGTGCCTGGAAGGCGTCGC
GTTTGTCTGCGTGTACAAGAAGCGGTAACGTTTGTATCTGGAGTTAAGAG
AATATTTCTCTGGTAACGAATCAAAGCACCTAATATGGACATTTCTGGCT
AATTCTTTCTCGAGCCTTTTTCC back to topCoding sequence (CDS) from alignment at CM002464.1:500738..503010+ >rna4853 ID=rna4853|Name=rna4853|organism=Nannochloropsis gaditana|type=CDS|length=3612bp|location=Sequence derived from alignment at CM002464.1:500738..503010+ (Nannochloropsis gaditana)
ATGACGGGGCCATCTACGCGAAATTCGTCCTCGCTCACGGCGGCGCACTG
GCGGACCAGCGTCTTGAACGCTTTGAAGCAGCAAAACGATGTGGAGGTCG
AGCCATTTCGTGGGATTATTCTAAGCTATACGGACCTTGCTCGGCAAAAC
CAAGTCCTCAAGGCCCATGTGGATCATCAGGAAAAAGAGTTGGTCACACT
GCGACATGAAGCATTAGAGCAGAGGGACAGCAAGggccaagggggggcag
gtgcGTGCGGTGCCAAGGACGAGCAGACAAGGAAGCTGCAGAGCAAGGTC
CAACGCTTGCAAGAAGAGCTTACCGACAAGTTGCGTCTGGAGGTGCAAGG
GACAACTTCACAGCTCAATATGAGTAAGGAAATACAAGATTTGTTCCAAA
AGTGGCAGCTTTCTCGAGCAGAAGCTGAAAAGTTGAGGACGGAGGTCGAC
GGGTTCCGGGCGCGAGAGGCTACGTTGGAGGCTCAGGCGGGTATGGCGAC
ACGGGACCTGGAGATAGTCCAGGAGGAGTTGAAGCGTGTCCGGGCACGCT
TGAACACTGTGGAAAAAGAGTACTTGGATGTACGTCGCCAGAACGAAGAG
CTGGTGCGGCGGATGGTTGGGGAAAAGTCTCACAACGCGGAGGAAATGAA
TCGCATGACGGAGCTCGTTGAGCGGATGCGCGCACAGCTCAAGGCCCGAA
ACTTGGAGATTGAGAGCACTCAAGCAGTGGCCGCGGATGTAGAAATTGAG
GCGGTACCATCTTCGGGGCTGAGGACTGACGAGCTACCCTCCCACTGCAA
CCAGCAGTTCCGAGCGCACGCTGCCGACGTGAACGACCTGGTCTACTGCG
ATACGGGCCAGTGGCTGGcgacggcgggcggggacggcaaAGTGCgggtg
tgggaggcgggaagtgGGCGATTGAAAGCAACGCTGCATGGTCAGGACGT
GATGCTCGGCTTAGACTTCCGCGGGGACTTTGTGGTTGGGGGGAGCAGCG
ATCATACGTGTAAGCTATGGAGTCTCGCCTCCGGGCGCTTGCACCGCACT
TTCGTGGGCCATTCGGGCAACGTTTACGCGGTCAAGTTGATCGCTGGGGA
CTTGAGGGCGGTTCTGACAGGAGGAGCTGACCGCACGATTCGGCTGTGGG
ACGTAGGGCGGGCGAGTTGTCGGCAAATTCTGCGCTCTGGCTCGACCTGC
AACGGTTTAGACATCGGAATGGACGGTCACGCGCCCGTGTCGGCGCATCA
GGATGGCGGTCTCCGTTTCTGGGACCTGCGTGCTGGCAATCCCACTATGA
TCGTGCGCGCCTTCGAGACGCAAGCTACGTCGGTACAGTACGGACAAAAC
TTTACCGCCCTCGCAAACTCCCGTGACAACGCCTTGAAGATCATCGACAC
GAGGACATTCGAGACACTCCACGTGCTGCGCCACGAGGACTATCGAACCT
TCTTAAATTGGTCCAGGGCTTGTTTCTCCCCGTCCAGTTCCTACGTCGCT
GCAGGATCGGCCACTGGCCAGCTTTTTGTCTGGGAAACAGCTTCAGGCGA
AATGAAATCGATCCTTTCTCACGCGCCGGACTCGAGGcattccttttctt
cttcgccagaACATGATGAGCTGAGATGTCAAGGCATGTCCCTCTCGGCT
TCGGGAGACAGGATCAGAACGAGCAGTGAGGCTTTGGACGGGAGTACAAG
TGGCGCTGGTcaaaggggtggaggaggaggtatcATAAGCTGTGCCTGGA
AGGCGTCGCGTTTGTCTGCGTGTACAAGAAGCGGTAACGTTTGTATCTGG
AGTTAAATGACGGGGCCATCTACGCGAAATTCGTCCTCGCTCACGGCGGC
GCACTGGCGGACCAGCGTCTTGAACGCTTTGAAGCAGCAAAACGATGTGG
AGGTCGAGCCATTTCGTGGGATTATTCTAAGCTATACGGACCTTGCTCGG
CAAAACCAAGTCCTCAAGGCCCATGTGGATCATCAGGAAAAAGAGTTGGT
CACACTGCGACATGAAGCATTAGAGCAGAGGGACAGCAAGggccaagggg
gggcaggtgcGTGCGGTGCCAAGGACGAGCAGACAAGGAAGCTGCAGAGC
AAGGTCCAACGCTTGCAAGAAGAGCTTACCGACAAGTTGCGTCTGGAGGT
GCAAGGGACAACTTCACAGCTCAATATGAGTAAGGAAATACAAGATTTGT
TCCAAAAGTGGCAGCTTTCTCGAGCAGAAGCTGAAAAGTTGAGGACGGAG
GTCGACGGGTTCCGGGCGCGAGAGGCTACGTTGGAGGCTCAGGCGGGTAT
GGCGACACGGGACCTGGAGATAGTCCAGGAGGAGTTGAAGCGTGTCCGGG
CACGCTTGAACACTGTGGAAAAAGAGTACTTGGATGTACGTCGCCAGAAC
GAAGAGCTGGTGCGGCGGATGGTTGGGGAAAAGTCTCACAACGCGGAGGA
AATGAATCGCATGACGGAGCTCGTTGAGCGGATGCGCGCACAGCTCAAGG
CCCGAAACTTGGAGATTGAGAGCACTCAAGCAGTGGCCGCGGATGTAGAA
ATTGAGGCGGTACCATCTTCGGGGCTGAGGACTGACGAGCTACCCTCCCA
CTGCAACCAGCAGTTCCGAGCGCACGCTGCCGACGTGAACGACCTGGTCT
ACTGCGATACGGGCCAGTGGCTGGcgacggcgggcggggacggcaaAGTG
CgggtgtgggaggcgggaagtgGGCGATTGAAAGCAACGCTGCATGGTCA
GGACGTGATGCTCGGCTTAGACTTCCGCGGGGACTTTGTGGTTGGGGGGA
GCAGCGATCATACGTGTAAGCTATGGAGTCTCGCCTCCGGGCGCTTGCAC
CGCACTTTCGTGGGCCATTCGGGCAACGTTTACGCGGTCAAGTTGATCGC
TGGGGACTTGAGGGCGGTTCTGACAGGAGGAGCTGACCGCACGATTCGGC
TGTGGGACGTAGGGCGGGCGAGTTGTCGGCAAATTCTGCGCTCTGGCTCG
ACCTGCAACGGTTTAGACATCGGAATGGACGGTCACGCGCCCGTGTCGGC
GCATCAGGATGGCGGTCTCCGTTTCTGGGACCTGCGTGCTGGCAATCCCA
CTATGATCGTGCGCGCCTTCGAGACGCAAGCTACGTCGGTACAGTACGGA
CAAAACTTTACCGCCCTCGCAAACTCCCGTGACAACGCCTTGAAGATCAT
CGACACGAGGACATTCGAGACACTCCACGTGCTGCGCCACGAGGACTATC
GAACCTTCTTAAATTGGTCCAGGGCTTGTTTCTCCCCGTCCAGTTCCTAC
GTCGCTGCAGGATCGGCCACTGGCCAGCTTTTTGTCTGGGAAACAGCTTC
AGGCGAAATGAAATCGATCCTTTCTCACGCGCCGGACTCGAGGcattcct
tttcttcttcgccagaACATGATGAGCTGAGATGTCAAGGCATGTCCCTC
TCGGCTTCGGGAGACAGGATCAGAACGAGCAGTGAGGCTTTGGACGGGAG
TACAAGTGGCGCTGGTcaaaggggtggaggaggaggtatcATAAGCTGTG
CCTGGAAGGCGTCGCGTTTGTCTGCGTGTACAAGAAGCGGTAACGTTTGT
ATCTGGAGTTAA back to top
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