rna4841, rna4841 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4841
Unique Name	rna4841
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1026
Alignment location	CM002464.1:479717..482044 -

Link to JBrowse

Properties


Property Name	Value
Product	rrna (guanine-n -)-methyltransferase
Orig transcript id	gnl\|cribi\|Naga_100021g11.8735.mrna
Orig protein id	gnl\|cribi\|Naga_100021g11.8735
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:479717..482044 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100021g11	gene4675	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25792.1	cds4829	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4841	rna4841-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:479717..482044-
coding sequence from alignment at CM002464.1:479717..482044-

mRNA sequence

>rna4841 ID=rna4841|Name=rna4841|organism=Nannochloropsis gaditana|type=mRNA|length=1026bp
ATGGTGTTCAAGAAACGAAAGCCAAAACTTGTAAAGCAGCGACAGGACGG
CAAGCCGCCTGAGGAGGTAAGTGGTGGTGTACATCGAGGCAAGATATTGA
TGGCAGAGGGCGAGAGCAATGCAACAACAAAGCAAATGCGAATTGTGTTT
CAGCTTCGTCATGATTGTACATTTCAGAAGATAGATACGACGCTTTCTAC
AGAAGTCATAGGGAAACACAACATGAGTAAGCGTATTGCATTTTTTCATC
GCCATCCTTCTTCCCCACAGGCAATAAACAAATCCGTTGAAAACAGTTCG
CCGGGAGATCGAGCAGATGCACAGATGGGCAAGAAACCCATTCATGATGA
TGAGTCAGAAGAAGACAGCGGCAACGGTATGATCTTATTGGACGCTACAC
CTTCCCATGCCCTATTGCCGCAGCAACGGAGGCTCGTGCAGGGCGCGTCA
CGACTGGGCAATATGCGCTTTGAGACTGGTCTCCCGACACCGTCCTATTT
TCAATTTGAAAAACTTGGCAAAACACAGAAGGCTATGGTAGTCCCGAACG
CCAAGCAAGTCGCCGCGTCAAAACAATCTTCCCTTCAGCTGAAGGCCGAT
ACAGCTGCACACATGCCGAGAAAGGTCAACTCTGGTGCAGTTCTTCACAG
AAAGGGTGCCGGGGGGGGTATAACAGGGATGAAGACCACTCAAGGCGTGT
ACGAAAGGGATAAGGAGAGAGAACAAGACGCGAAAATGCTGTTGATGCGC
AACTACATGGACCCGAAGCGTTTCTACAAGGGGCTGGAGGGGCTGGCTCC
AGATTTTCAGGTGGGTACCGTCATCGAGGGCCGGATGGATCCCATGCACG
CTCGCATGCCGCGGCGAGACCGAAAGCGCACTTTTGTGGATGAGATTCTG
GCAGACCGTGGTGTTCGGAGGTACTCAAAGAAAAAGTTCTTGGCGATTCA
GGAGACCAAGAAGGCCGGGCGCAAGGGTTTGTACAGAGCGAGGCAACAAA
AGCATAAGCCCAAGTGGGCGAGATAA

protein sequence of rna4841

>rna4841-protein ID=rna4841-protein|Name=rna4841|organism=Nannochloropsis gaditana|type=polypeptide|length=775bp
MFTRAGGEGCGEALRNFCMPPYQFRGPWRPIKALLASLLPLALFDRAQAF
SGHPPLKHYFAPCSGGLATVLGQELLSTQIGAAEVEVQKRGCAFLGTEEA
AYRALLWSRTANGVWQLMVRQRGICNRKDLYDMVRRVAWLEAMSVEDSVA
VSCVLGGGEVATDIAHTHFSSLTVKNALVDSFRERSGGRRPSVDAKDPVL
PLVLFLQRDEAWLYRSLSGPGSLHKRGYRQQMHKSSLRETTAAAVLMLAG
YDPERHVLMDPMCGSGTLAIEAALMARRLAPGLTRLKREGDLAVLTPARW
PDTDLALLRRLVREAKAQELERAPLPILGNDWHPAAVELAKRDAGSAGVF
HDIIFSSQDASDHRLDGSVARKPNLVVCNPPWDLRLNEGARESWEALGRF
LKREAGGAEAFLLSGNPDVTRTLRMKAKRKIPIDQAGMSLRLLQYQVLPP
RLAGGESEGRAASLRGGPASQATGPSERVDDTQTPLRATSTRLSVTPPPP
QRLARPGIAPVRASRAQALSGAGSSLTTLAVGLLLGCQRSSSPALARNVF
DVPSSSVTASQSLKGAYDEYASSYDGLDGGDAARFLGLDAARKELIGRAR
GHVLECGVGTGLNLPFYEFGSGSAPTVSLDAIDLSPGMLREARSKAAFLN
LGPDAVRFREMDVAKMDFADESFDCVCDTFSLCVYLDPAQALKEMARVCK
AESGRVLLLENSRSNLLPVAAYQDVTAGIVARYGGKGCVYNQDVASLARQ
AGLRVMSQKPLLGGLMTMLECARET

mRNA from alignment at CM002464.1:479717..482044-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4841 ID=rna4841|Name=rna4841|organism=Nannochloropsis gaditana|type=mRNA|length=2328bp|location=Sequence derived from alignment at CM002464.1:479717..482044- (Nannochloropsis gaditana)
ATGTTTACCCGTGCAGGAGGCGAGGGCTGTGGGGAGGCCTTGCGCAATTT
CTGTATGCCGCCATATCAATTTCGGGGGCCCTGGAGGCCGATAAAGGCCC
TCTTAGCCTCCCTGCTCCCCCTCGCCCTCTTTGACCGGGCTCAGGCTTTT
TCAGGCCACCCACCTCTGAAGCACTACTTTGCCCCGTGTTCGGGCGGGCT
TGCGACGGTACTGGGTCAAGAATTGTTGTCAACGCAAATTGGTGCCGCAG
AGGTGGAAGTCCAGAAGCGGGGATGTGCGTTTCTGGGTACGGAGGAGGCG
GCCTACCGCGCCCTGCTTTGGAGCCGTACCGCAAACGGAGTGTGGCAGCT
CATGGTGCGGCAGCGAGGGATTTGTAATCGAAAGGACCTGTACGATATGG
TGCGGCGCGTTGCATGGCTCGAAGCGATGAGCGTGGAGGATAGCGTTGCC
GTGAGTTGCGTCCTGGGTGGGGGGGAGGTGGCGACAGACATCGCACACAC
CCACTTCTCCTCCCTGACGGTCAAAAACGCCCTGGTCGATTCCTTTCGCG
AGCGGTCGGGCGGCCGGCGTCCCAGCGTGGACGCGAAGGACCCCGTCTTG
CCCCTTGTTCTCTTTTTGCAGCGGGACGAGGCTTGGCTGTACCGGAGCTT
GAGCGGGCCGGGCTCTCTGCACAAACGCGGGTACAGGCAGCAAATGCACA
AGTCCTCCCTGCGCGAGACCACGGCGGCGGCCGTCTTGATGCTGGCCGGC
TACGACCCGGAAAGGCACGTGCTGATGGACCCCATGTGCGGGTCCGGGAC
TCTGGCCATCGAGGCCGCGCTCATGGCGAGGAGGCTGGCGCCCGGCCTCA
CGCGCCTGAAGCGGGAGGGGGATCTGGCGGTCCTGACGCCGGCGCGGTGG
CCGGACACGGACCTAGCCCTACTCCGGCGGCTCGTCCGCGAGGCCAAGGC
GCAGGAGCTGGAGCGCGCCCCGCTCCCTATCCTGGGTAACGACTGGCACC
CGGCGGCCGTGGAGCTGGCCAAGCGGGACGCGGGCTCGGCGGGCGTCTTC
CACGACATCATCTTCAGCAGCCAGGACGCGTCGGATCATCGTCTGGACGG
CTCGGTGGCGCGGAAGCCGAACTTGGTGGTGTGCAACCCGCCCTGGGACC
TGCGGCTGAACGAGGGGGCGAGGGAGAGCTGGGAGGCTCTGGGCCGCTTC
CTGAAGCGCGAGGCCGGGGGGGCGGAAGCCTTCCTGCTCTCAGGGAACCC
GGACGTGACGCGCACCTTGCGGATGAAAGCCAAGCGAAAGATCCCGATCG
ACCAGGCGGGCATGAGTCTACGGCTGCTGCAATACCAGGTCCTTCCCCCT
CGCCTCGCGGGCGGGGAGTCGGAGGGCCGGGCTGCAAGCCTCCGCGGGGG
GCCCGCGTCGCAGGCGACAGGTCCGTCGGAGAGGGTGGATGACACTCAGA
CACCCCTGCGAGCGACCTCCACCAGGCTGTCCGTGACGCCCCCCCCACCG
CAAAGGCTCGCTAGGCCGGGCATCGCCCCAGTCAGGGCCTCGCGCGCTCA
GGCGCTCTCGGGGGCGGGCTCCTCTCTCACCACGCTGGCAGTGGGGCTCC
TGCTTGGATGCCAACGGTCGTCGTCTCCAGCGCTTGCCCGAAACGTCTTC
GATGTCCCCTCGTCGTCTGTGACGGCAAGCCAGTCGCTGAAGGGAGCCTA
TGACGAGTACGCATCCTCCTACGACGGCTTGGACGGGGGGGACGCTGCCC
GCTTCCTGGGCCTCGACGCCGCGCGTAAGGAGTTGATCGGGCGAGCCCGC
GGGCATGTTTTGGAGTGCGGAGTTGGCACGGGCTTGAACCTTCCTTTCTA
CGAGTTTGGTTCCGGGAGCGCGCCCACCGTCTCCCTCGACGCCATCGACC
TGAGTCCTGGCATGCTGCGCGAGGCCCGGTCCAAGGCGGCTTTCCTGAAC
CTGGGGCCCGACGCCGTTCGCTTCCGTGAAATGGATGTGGCCAAGATGGA
CTTTGCCGATGAAAGTTTTGATTGTGTCTGCGATACATTTTCCCTCTGTG
TGTACCTGGACCCTGCCCAAGCCTTGAAGGAAATGGCGCGCGTGTGCAAG
GCTGAATCGGGAAGAGTGTTGCTCCTGGAAAACAGTCGCAGTAATTTGCT
ACCTGTGGCCGCATACCAAGACGTGACGGCCGGTATAGTCGCGCGTTACG
GTGGTAAGGGTTGTGTTTACAATCAGGACGTGGCAAGTCTCGCTCGTCAG
GCCGGTCTACGTGTGATGTCACAGAAGCCCTTGCTGGGTGGTCTCATGAC
GATGCTAGAGTGTGCGCGGGAAACTTAG

Coding sequence (CDS) from alignment at CM002464.1:479717..482044-

>rna4841 ID=rna4841|Name=rna4841|organism=Nannochloropsis gaditana|type=CDS|length=2328bp|location=Sequence derived from alignment at CM002464.1:479717..482044- (Nannochloropsis gaditana)
ATGTTTACCCGTGCAGGAGGCGAGGGCTGTGGGGAGGCCTTGCGCAATTT
CTGTATGCCGCCATATCAATTTCGGGGGCCCTGGAGGCCGATAAAGGCCC
TCTTAGCCTCCCTGCTCCCCCTCGCCCTCTTTGACCGGGCTCAGGCTTTT
TCAGGCCACCCACCTCTGAAGCACTACTTTGCCCCGTGTTCGGGCGGGCT
TGCGACGGTACTGGGTCAAGAATTGTTGTCAACGCAAATTGGTGCCGCAG
AGGTGGAAGTCCAGAAGCGGGGATGTGCGTTTCTGGGTACGGAGGAGGCG
GCCTACCGCGCCCTGCTTTGGAGCCGTACCGCAAACGGAGTGTGGCAGCT
CATGGTGCGGCAGCGAGGGATTTGTAATCGAAAGGACCTGTACGATATGG
TGCGGCGCGTTGCATGGCTCGAAGCGATGAGCGTGGAGGATAGCGTTGCC
GTGAGTTGCGTCCTGGGTGGGGGGGAGGTGGCGACAGACATCGCACACAC
CCACTTCTCCTCCCTGACGGTCAAAAACGCCCTGGTCGATTCCTTTCGCG
AGCGGTCGGGCGGCCGGCGTCCCAGCGTGGACGCGAAGGACCCCGTCTTG
CCCCTTGTTCTCTTTTTGCAGCGGGACGAGGCTTGGCTGTACCGGAGCTT
GAGCGGGCCGGGCTCTCTGCACAAACGCGGGTACAGGCAGCAAATGCACA
AGTCCTCCCTGCGCGAGACCACGGCGGCGGCCGTCTTGATGCTGGCCGGC
TACGACCCGGAAAGGCACGTGCTGATGGACCCCATGTGCGGGTCCGGGAC
TCTGGCCATCGAGGCCGCGCTCATGGCGAGGAGGCTGGCGCCCGGCCTCA
CGCGCCTGAAGCGGGAGGGGGATCTGGCGGTCCTGACGCCGGCGCGGTGG
CCGGACACGGACCTAGCCCTACTCCGGCGGCTCGTCCGCGAGGCCAAGGC
GCAGGAGCTGGAGCGCGCCCCGCTCCCTATCCTGGGTAACGACTGGCACC
CGGCGGCCGTGGAGCTGGCCAAGCGGGACGCGGGCTCGGCGGGCGTCTTC
CACGACATCATCTTCAGCAGCCAGGACGCGTCGGATCATCGTCTGGACGG
CTCGGTGGCGCGGAAGCCGAACTTGGTGGTGTGCAACCCGCCCTGGGACC
TGCGGCTGAACGAGGGGGCGAGGGAGAGCTGGGAGGCTCTGGGCCGCTTC
CTGAAGCGCGAGGCCGGGGGGGCGGAAGCCTTCCTGCTCTCAGGGAACCC
GGACGTGACGCGCACCTTGCGGATGAAAGCCAAGCGAAAGATCCCGATCG
ACCAGGCGGGCATGAGTCTACGGCTGCTGCAATACCAGGTCCTTCCCCCT
CGCCTCGCGGGCGGGGAGTCGGAGGGCCGGGCTGCAAGCCTCCGCGGGGG
GCCCGCGTCGCAGGCGACAGGTCCGTCGGAGAGGGTGGATGACACTCAGA
CACCCCTGCGAGCGACCTCCACCAGGCTGTCCGTGACGCCCCCCCCACCG
CAAAGGCTCGCTAGGCCGGGCATCGCCCCAGTCAGGGCCTCGCGCGCTCA
GGCGCTCTCGGGGGCGGGCTCCTCTCTCACCACGCTGGCAGTGGGGCTCC
TGCTTGGATGCCAACGGTCGTCGTCTCCAGCGCTTGCCCGAAACGTCTTC
GATGTCCCCTCGTCGTCTGTGACGGCAAGCCAGTCGCTGAAGGGAGCCTA
TGACGAGTACGCATCCTCCTACGACGGCTTGGACGGGGGGGACGCTGCCC
GCTTCCTGGGCCTCGACGCCGCGCGTAAGGAGTTGATCGGGCGAGCCCGC
GGGCATGTTTTGGAGTGCGGAGTTGGCACGGGCTTGAACCTTCCTTTCTA
CGAGTTTGGTTCCGGGAGCGCGCCCACCGTCTCCCTCGACGCCATCGACC
TGAGTCCTGGCATGCTGCGCGAGGCCCGGTCCAAGGCGGCTTTCCTGAAC
CTGGGGCCCGACGCCGTTCGCTTCCGTGAAATGGATGTGGCCAAGATGGA
CTTTGCCGATGAAAGTTTTGATTGTGTCTGCGATACATTTTCCCTCTGTG
TGTACCTGGACCCTGCCCAAGCCTTGAAGGAAATGGCGCGCGTGTGCAAG
GCTGAATCGGGAAGAGTGTTGCTCCTGGAAAACAGTCGCAGTAATTTGCT
ACCTGTGGCCGCATACCAAGACGTGACGGCCGGTATAGTCGCGCGTTACG
GTGGTAAGGGTTGTGTTTACAATCAGGACGTGGCAAGTCTCGCTCGTCAG
GCCGGTCTACGTGTGATGTCACAGAAGCCCTTGCTGGGTGGTCTCATGAC
GATGCTAGAGTGTGCGCGGGAAACTTAG

Synonyms

Publications