rna4827, rna4827 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4827
Unique Name	rna4827
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	861
Alignment location	CM002464.1:453927..457357 -

Link to JBrowse

Properties


Property Name	Value
Product	n-acetyltransferase 10
Orig transcript id	gnl\|cribi\|Naga_100054g37.5577.mrna
Orig protein id	gnl\|cribi\|Naga_100054g37.5577
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:453927..457357 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100054g37	gene4662	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25885.1	cds4815	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4827	rna4827-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:453927..457357-
coding sequence from alignment at CM002464.1:453927..457357-

mRNA sequence

>rna4827 ID=rna4827|Name=rna4827|organism=Nannochloropsis gaditana|type=mRNA|length=861bp
CATTCTATCAAGGCATCAAGCACACGTAGACAACCGAAAATGTTCTCTGA
TGAGGCACAATCCCTTTTGTCTCCTATCCAGGACGCGGCCAAGGAGTGCT
CTTCTTGCACGATTCAGCTTTTGGTGCCCTCGAAGGCGTACACCCTGGGC
AGCAGCGCGCAGATCTGTATGACTTGTAGCTAAAGATAAGTTGTTATCTG
CCGCACCTCACAGAAACAATACCATGGCCGGCGACTGGGGGATGACCGTT
CTCAAGCTAAGTTTGCTAAGTGTCGCTTTGACGCTTTTAGCCAGCATGGG
ATCGCAGCCTTCATACAACTTTCCTATTGCCTTATTAGGCGTATGGGTGC
CTCACATCCCGAAACCGTTTTTGACTTCCCTTTTATTCGTTCTCCTCCCT
GTCGCTATGCTTCTTGACATACTTTGGGCGAGCCTTTACGGCCCATATCT
TAACAGTGGGGCACCTCTCCTCGCTTTGATATTGACCGTCTTGAATCTGT
TTCTGAAAGTTCCCTGGTCATACGCGGCCTGGGAGCTGATGAACGAGACT
GGAGGGAATCCAATGGTTCTTATCAATCCAGAACTCGCGATTGGAGGCGC
AGGTTTGGGGGATGGCTCGCATGAACGAATCAATGACATCTAAGTGTAAA
GTACGCCGCAGAATGGTGGTCAGATGAAGCTATCACAGCAAACCTCTTGG
TCTCAGAGCGTATGCAGTCGACCGTTGACAAAGGATTTTCGATTTCATTT
CAAGCTAATTCTTTGATGGGTCATCGGGAATCTCGCCGTCAAAATCCGTC
AGTCGCTATCTTTCTTATGCTTCTTCTGCTTCTTGTCCTTCTTTTTTGGT
GAAACCACCGG

protein sequence of rna4827

>rna4827-protein ID=rna4827-protein|Name=rna4827|organism=Nannochloropsis gaditana|type=polypeptide|length=1057bp
MVRKKVDDRVRTLIENGVQSRHRSLLVLVGDHGKDQVVNLHYILSRTQVK
ARPSVLWCYKKELGFSTHRKKRMRQIKRNVQRGLHDPDKDDPFDLFISST
NIRWCYYKETHRILGQTFGMCVLQDFEALTPNLLARTVETVEGGGLVVLL
LQSVTSLRQLYTMAMDVHARFRTEAHGDVLARFNERFILSLADCRTCLVL
DDELNVLPISTKSRALVAGPGVDQGAIGAAEAALSDLKESVAEMQPLGAL
VSLARTVDQAKAVISFLEAVQDKALRTTVSLTASRGRGKSAAVGLCLAGA
VAFGYSNIFVTAPSPENLETVFDFVKRGLVALKYQEHLDFEVVQAGHHRQ
GPQGGLDARATVRISVFRQHRQVIQYIAPHEHEKLSQAELVAVDEAAAIP
LPLVKRLLGPYLVFLSSTVTGYEGTGRSLSLKLVAQLREQQGRAMAGMRK
LKEVTLETPIRYAAGDPIERWLYAVLCLDAQISKHRIVSSLPPASACQLY
QVDRDALFSYHKVSEAFLQRVMALYTAAHYKNQPNDLQLLSDAPAHRLFV
LLGPPGSSSSPDALPDVLCVIQVALEGRISQASVQASLARGHRASGDLIP
WTMSQQFQDADFAKLSGARVVRIATHPDAQRLGYGTRALTLLLEHYAGKM
SPAPAVAVEVSDGAPREGSEGEDEAEEGEVKSKKSQLRDERLRPRQELPP
LLVPLDKLKGRERLHWVGSSFGLTESLLNFWARAGMRLVYLRQTANDLTG
EHTAIMLRALSTEGLEGEAVAGDWLAAFAEDTLRRLVSLLSFEFREQLGT
ALDLAILNNVREGLAPPGPPITAKQLGYLLIPRDLERLHLYARNLADYHL
ITDLLPTLARVYFLRMLPASVHLSRLMEAILVGLGLRHRTVDQLARELGI
EGDQILALFNKIVRKIGASMKEIGGQQEVAGVSAVSGKGMTHGPSKAPKK
DQASVESRKNKGAAELNGSHAEKKRKLLEEERGEPPALLSIDPAQERSRD
KEKKKKKKDTTAVHAQTKSPSVEHDVISAVEFKKGTSPVVSPKKKDKKQK
KHKKDSD

mRNA from alignment at CM002464.1:453927..457357-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4827 ID=rna4827|Name=rna4827|organism=Nannochloropsis gaditana|type=mRNA|length=3431bp|location=Sequence derived from alignment at CM002464.1:453927..457357- (Nannochloropsis gaditana)
CTAGCTGTCCTGACATATGGGGAAAAATATCACCAAGTGCACAGTTTGAA
ATATCTGCATCGCCATGACAATCACCATACCTCTTTCCCTACGATTGACA
TACTTTGATTCCGTCTCTCCATCAAATCAACGCCTCAAGAACTTACACCC
CCTGAACAACAGGAAAACGGGTCTCAAGCGATAGGATGGTGCGGAAAAAG
GTGGACGACCGAGTGCGAACTTTGATCGAAAATGGTGTTCAATCTCGCCA
TCGCTCACTCTTGGTGCTCGTAGGGGATCACGGGAAGGATCAGGTGGTAA
ATCTGCATTATATCTTGAGCCGTACCCAGGTCAAAGCCCGGCCTTCAGTA
CTGTGGTGCTACAAGAAAGAGTTAGGTTTTTCCACTCACCGAAAAAAGCG
CATGCGACAAATTAAAAGGAATGTGCAGCGAGGCTTGCACGACCCGGACA
AGGACGACCCTTTTGATCTGTTCATTTCGTCGACTAACATCCGCTGGTGC
TACTACAAGGAGACGCACCGGATTCTAGGCCAAACCTTTGGCATGTGCGT
GTTGCAAGACTTCGAGGCCTTGACTCCCAACCTACTCGCACGCACTGTTG
AGACTGTCGAGGGGGGAGGACTGGTTGTCCTGCTGCTGCAATCAGTCACC
TCCCTCCGCCAGCTCTACACGATGGCCATGGACGTGCATGCGCGCTTCCG
CACCGAGGCACACGGCGACGTTCTGGCCCGTTTCAATGAGCGCTTTATCC
TCTCCTTGGCAGACTGTCGGACTTGTTTGGTGCTGGACGACGAGTTAAAT
GTTTTGCCTATCTCAACGAAGAGTCGCGCTCTGGTCGCCGGGCCGGGCGT
GGATCAAGGCGCCATCGGAGCTGCGGAGGCGGCGCTGAGTGACCTGAAGG
AGTCGGTGGCAGAGATGCAGCCGCTAGGAGCCTTAGTGAGCCTGGCTCGG
ACGGTGGACCAAGCGAAGGCCGTGATCTCTTTCCTGGAAGCAGTGCAAGA
CAAGGCGCTAAGGACAACGGTCAGCCTCACGGCATCGCGTGGGCGGGGCA
AGTCTGCGGCCGTCGGGCTCTGCTTGGCTGGGGCCGTCGCTTTCGGGTAC
AGCAACATTTTCGTGACGGCGCCGTCGCCGGAGAACTTGGAGACGGTCTT
CGACTTCGTGAAGCGGGGCCTGGTGGCGCTCAAGTACCAGGAGCACCTGG
ACTTCGAGGTGGTGCAGGCAGGACACCACAGGCAGGGGCCGCAGGGGGGC
CTGGATGCGAGGGCGACGGTGCGGATCTCCGTCTTCCGGCAGCACCGACA
GGTCATCCAGTACATCGCCCCGCACGAGCACGAGAAACTCTCTCAGGCCG
AGCTGGTGGCGGTGGACGAGGCGGCCGCCATTCCTTTGCCCCTGGTCAAG
AGGCTGCTCGGGCCCTACCTGGTGTTCCTCTCCTCGACCGTGACGGGCTA
CGAGGGCACCGGCCGCTCTCTCTCCCTTAAACTCGTGGCGCAGCTGCGGG
AACAGCAAGGACGTGCCATGGCTGGCATGCGCAAGCTCAAAGAGGTGACG
CTGGAAACGCCAATCCGGTACGCTGCCGGTGACCCGATCGAGCGCTGGCT
CTACGCGGTCCTGTGCCTGGACGCTCAGATCTCAAAGCACCGTATCGTCT
CCTCCTTGCCCCCCGCCAGCGCCTGCCAGCTCTACCAAGTCGACCGCGAC
GCGCTCTTCTCGTACCACAAGGTCTCGGAAGCTTTCCTACAGCGCGTCAT
GGCCCTCTACACGGCCGCACACTACAAGAACCAGCCGAACGACCTCCAGC
TCTTGAGCGACGCTCCTGCCCACCGTCTCTTCGTCCTGTTAGGGCCCCCG
GGCTCGTCGTCCTCCCCAGATGCTCTGCCCGACGTGCTCTGCGTCATCCA
GGTGGCCCTGGAAGGCCGCATCTCCCAGGCCTCAGTGCAAGCCTCCTTGG
CGCGTGGGCACCGGGCCTCGGGGGATCTGATCCCGTGGACCATGTCTCAG
CAGTTCCAGGATGCAGACTTTGCCAAACTCTCTGGCGCCCGCGTTGTTCG
GATAGCCACCCACCCCGATGCCCAGCGCCTCGGCTACGGGACCCGGGCCT
TGACCTTGCTCCTGGAGCACTACGCCGGGAAAATGAGCCCCGCCCCGGCT
GTGGCAGTGGAAGTAAGCGACGGGGCGCCGAGGGAGGGGAGTGAAGGGGA
GGACGAAGCCGAAGAAGGGGAGGTGAAGTCGAAGAAAAGCCAGCTCCGTG
ACGAGCGCTTGCGTCCCCGCCAGGAGCTTCCTCCTCTTTTGGTGCCGTTG
GACAAGCTTAAAGGGAGAGAGCGCCTGCACTGGGTGGGCTCCTCCTTCGG
TCTCACGGAAAGTCTCCTTAACTTTTGGGCGCGAGCGGGGATGCGGCTTG
TCTACCTCCGGCAGACAGCCAACGACCTGACGGGCGAGCACACGGCCATC
ATGCTGCGCGCTCTCAGCACCGAGGGCCTGGAAGGGGAAGCCGTCGCCGG
GGACTGGCTGGCGGCTTTCGCGGAGGATACACTGCGGCGTCTCGTGAGCC
TCCTTTCGTTCGAGTTCCGGGAGCAATTGGGCACGGCCTTGGACTTGGCC
ATTTTGAACAACGTGCGCGAAGGTCTTGCGCCGCCTGGACCGCCCATCAC
AGCCAAGCAACTGGGATATCTCCTGATTCCTCGCGACCTGGAGCGCCTCC
ACCTGTACGCTCGCAACTTGGCCGACTACCACTTGATCACAGACCTACTC
CCGACGCTGGCGCGGGTCTACTTCTTGCGGATGTTGCCAGCGAGCGTGCA
CCTGTCCCGGCTCATGGAGGCTATTTTGGTGGGGCTGGGGCTTAGGCATC
GGACGGTGGACCAGCTCGCGCGAGAGCTCGGGATAGAGGGGGATCAGATA
CTTGCCCTATTCAACAAGATAGTTCGCAAGATTGGAGCCAGTATGAAAGA
GATTGGTGGGCAGCAGGAGGTGGCCGGGGTTTCGGCCGTATCAGGGAAGG
GTATGACTCACGGTCCGTCGAAGGCACCGAAGAAAGACCAGGCCAGTGTC
GAATCAAGAAAAAACAAAGGGGCGGCGGAGCTGAACGGCAGTCACGCGGA
AAAAAAGCGGAAACTTTTGGAGGAGGAAAGAGGGGAGCCCCCGGCTCTGT
TATCGATCGACCCCGCTCAAGAGCGTTCTAGGGACAAGGAGAAAAAGAAG
AAGAAGAAAGACACAACCGCAGTCCATGCACAGACGAAGTCGCCGTCGGT
TGAGCACGACGTAATTTCCGCGGTGGAGTTTAAAAAAGGCACGTCTCCGG
TGGTTTCACCAAAAAAGAAGGACAAGAAGCAGAAGAAGCATAAGAAAGAT
AGCGACTGACGGATTTTGACGGCGAGATTCCCGATGACCCATCAAAGAAT
TAGCTTGAAATGAAATCGAAAATCCTTTGTC

Coding sequence (CDS) from alignment at CM002464.1:453927..457357-

>rna4827 ID=rna4827|Name=rna4827|organism=Nannochloropsis gaditana|type=CDS|length=3174bp|location=Sequence derived from alignment at CM002464.1:453927..457357- (Nannochloropsis gaditana)
ATGGTGCGGAAAAAGGTGGACGACCGAGTGCGAACTTTGATCGAAAATGG
TGTTCAATCTCGCCATCGCTCACTCTTGGTGCTCGTAGGGGATCACGGGA
AGGATCAGGTGGTAAATCTGCATTATATCTTGAGCCGTACCCAGGTCAAA
GCCCGGCCTTCAGTACTGTGGTGCTACAAGAAAGAGTTAGGTTTTTCCAC
TCACCGAAAAAAGCGCATGCGACAAATTAAAAGGAATGTGCAGCGAGGCT
TGCACGACCCGGACAAGGACGACCCTTTTGATCTGTTCATTTCGTCGACT
AACATCCGCTGGTGCTACTACAAGGAGACGCACCGGATTCTAGGCCAAAC
CTTTGGCATGTGCGTGTTGCAAGACTTCGAGGCCTTGACTCCCAACCTAC
TCGCACGCACTGTTGAGACTGTCGAGGGGGGAGGACTGGTTGTCCTGCTG
CTGCAATCAGTCACCTCCCTCCGCCAGCTCTACACGATGGCCATGGACGT
GCATGCGCGCTTCCGCACCGAGGCACACGGCGACGTTCTGGCCCGTTTCA
ATGAGCGCTTTATCCTCTCCTTGGCAGACTGTCGGACTTGTTTGGTGCTG
GACGACGAGTTAAATGTTTTGCCTATCTCAACGAAGAGTCGCGCTCTGGT
CGCCGGGCCGGGCGTGGATCAAGGCGCCATCGGAGCTGCGGAGGCGGCGC
TGAGTGACCTGAAGGAGTCGGTGGCAGAGATGCAGCCGCTAGGAGCCTTA
GTGAGCCTGGCTCGGACGGTGGACCAAGCGAAGGCCGTGATCTCTTTCCT
GGAAGCAGTGCAAGACAAGGCGCTAAGGACAACGGTCAGCCTCACGGCAT
CGCGTGGGCGGGGCAAGTCTGCGGCCGTCGGGCTCTGCTTGGCTGGGGCC
GTCGCTTTCGGGTACAGCAACATTTTCGTGACGGCGCCGTCGCCGGAGAA
CTTGGAGACGGTCTTCGACTTCGTGAAGCGGGGCCTGGTGGCGCTCAAGT
ACCAGGAGCACCTGGACTTCGAGGTGGTGCAGGCAGGACACCACAGGCAG
GGGCCGCAGGGGGGCCTGGATGCGAGGGCGACGGTGCGGATCTCCGTCTT
CCGGCAGCACCGACAGGTCATCCAGTACATCGCCCCGCACGAGCACGAGA
AACTCTCTCAGGCCGAGCTGGTGGCGGTGGACGAGGCGGCCGCCATTCCT
TTGCCCCTGGTCAAGAGGCTGCTCGGGCCCTACCTGGTGTTCCTCTCCTC
GACCGTGACGGGCTACGAGGGCACCGGCCGCTCTCTCTCCCTTAAACTCG
TGGCGCAGCTGCGGGAACAGCAAGGACGTGCCATGGCTGGCATGCGCAAG
CTCAAAGAGGTGACGCTGGAAACGCCAATCCGGTACGCTGCCGGTGACCC
GATCGAGCGCTGGCTCTACGCGGTCCTGTGCCTGGACGCTCAGATCTCAA
AGCACCGTATCGTCTCCTCCTTGCCCCCCGCCAGCGCCTGCCAGCTCTAC
CAAGTCGACCGCGACGCGCTCTTCTCGTACCACAAGGTCTCGGAAGCTTT
CCTACAGCGCGTCATGGCCCTCTACACGGCCGCACACTACAAGAACCAGC
CGAACGACCTCCAGCTCTTGAGCGACGCTCCTGCCCACCGTCTCTTCGTC
CTGTTAGGGCCCCCGGGCTCGTCGTCCTCCCCAGATGCTCTGCCCGACGT
GCTCTGCGTCATCCAGGTGGCCCTGGAAGGCCGCATCTCCCAGGCCTCAG
TGCAAGCCTCCTTGGCGCGTGGGCACCGGGCCTCGGGGGATCTGATCCCG
TGGACCATGTCTCAGCAGTTCCAGGATGCAGACTTTGCCAAACTCTCTGG
CGCCCGCGTTGTTCGGATAGCCACCCACCCCGATGCCCAGCGCCTCGGCT
ACGGGACCCGGGCCTTGACCTTGCTCCTGGAGCACTACGCCGGGAAAATG
AGCCCCGCCCCGGCTGTGGCAGTGGAAGTAAGCGACGGGGCGCCGAGGGA
GGGGAGTGAAGGGGAGGACGAAGCCGAAGAAGGGGAGGTGAAGTCGAAGA
AAAGCCAGCTCCGTGACGAGCGCTTGCGTCCCCGCCAGGAGCTTCCTCCT
CTTTTGGTGCCGTTGGACAAGCTTAAAGGGAGAGAGCGCCTGCACTGGGT
GGGCTCCTCCTTCGGTCTCACGGAAAGTCTCCTTAACTTTTGGGCGCGAG
CGGGGATGCGGCTTGTCTACCTCCGGCAGACAGCCAACGACCTGACGGGC
GAGCACACGGCCATCATGCTGCGCGCTCTCAGCACCGAGGGCCTGGAAGG
GGAAGCCGTCGCCGGGGACTGGCTGGCGGCTTTCGCGGAGGATACACTGC
GGCGTCTCGTGAGCCTCCTTTCGTTCGAGTTCCGGGAGCAATTGGGCACG
GCCTTGGACTTGGCCATTTTGAACAACGTGCGCGAAGGTCTTGCGCCGCC
TGGACCGCCCATCACAGCCAAGCAACTGGGATATCTCCTGATTCCTCGCG
ACCTGGAGCGCCTCCACCTGTACGCTCGCAACTTGGCCGACTACCACTTG
ATCACAGACCTACTCCCGACGCTGGCGCGGGTCTACTTCTTGCGGATGTT
GCCAGCGAGCGTGCACCTGTCCCGGCTCATGGAGGCTATTTTGGTGGGGC
TGGGGCTTAGGCATCGGACGGTGGACCAGCTCGCGCGAGAGCTCGGGATA
GAGGGGGATCAGATACTTGCCCTATTCAACAAGATAGTTCGCAAGATTGG
AGCCAGTATGAAAGAGATTGGTGGGCAGCAGGAGGTGGCCGGGGTTTCGG
CCGTATCAGGGAAGGGTATGACTCACGGTCCGTCGAAGGCACCGAAGAAA
GACCAGGCCAGTGTCGAATCAAGAAAAAACAAAGGGGCGGCGGAGCTGAA
CGGCAGTCACGCGGAAAAAAAGCGGAAACTTTTGGAGGAGGAAAGAGGGG
AGCCCCCGGCTCTGTTATCGATCGACCCCGCTCAAGAGCGTTCTAGGGAC
AAGGAGAAAAAGAAGAAGAAGAAAGACACAACCGCAGTCCATGCACAGAC
GAAGTCGCCGTCGGTTGAGCACGACGTAATTTCCGCGGTGGAGTTTAAAA
AAGGCACGTCTCCGGTGGTTTCACCAAAAAAGAAGGACAAGAAGCAGAAG
AAGCATAAGAAAGATAGCGACTGA

Synonyms

Publications