rna4826, rna4826 (mRNA) Nannochloropsis gaditana

Overview
Namerna4826
Unique Namerna4826
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length434
Alignment locationCM002464.1:453201..454061 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100054g36.5553.mrna
Orig protein idgnl|cribi|Naga_100054g36.5553
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:453201..454061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100054g36gene4661Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4826rna4826-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25861.1cds4814Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4826 ID=rna4826|Name=rna4826|organism=Nannochloropsis gaditana|type=mRNA|length=434bp
CATCTGAAGCGGCGCCTATAAGTAGGGATTCTTCTATACTATTTCTTTGG
AAGCCGAAGCACGCATTGGATGCTTGTCACCCTCTGTGCGCGTGCTCGAA
TTTGCCATCGATCCTCAATATGACCTCCCCACTCCAACCACACAGGTGGT
TACGATGATCGAGGTCATTCTGAATGATCGTCTGGGCAAAAAAATCAGGG
TCAAATGTAATGAGGACGATACAATTGGAGATCTTAAAAAGCTTGTTGCA
GCGCAAACAGGAACACGACCGGAAAAGATCCGTATCCAAAAATGGTACAC
GGTGTACAAAGACCACATCACGTTGGCAGATTATGAAATAAGCGAGGGCA
TGTCTCTAGAACTTTACTATTCCTAGAGCCTACGACGCACATAAAATATA
TGGTGAAGAAGAAACCCTTCGCATCTTAAAAGTG
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protein sequence of rna4826

>rna4826-protein ID=rna4826-protein|Name=rna4826|organism=Nannochloropsis gaditana|type=polypeptide|length=139bp
MAGDWGMTVLKLSLLSVALTLLASMGSQPSYNFPIALLGVWVPHIPKPFL
TSLLFVLLPVAMLLDILWASLYGPYLNSGAPLLALILTVLNLFLKVPWSY
AAWELMNETGGNPMVLINPELAIGGAGLGDGSHERINDI
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mRNA from alignment at CM002464.1:453201..454061+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4826 ID=rna4826|Name=rna4826|organism=Nannochloropsis gaditana|type=mRNA|length=861bp|location=Sequence derived from alignment at CM002464.1:453201..454061+ (Nannochloropsis gaditana)
CATTCTATCAAGGCATCAAGCACACGTAGACAACCGAAAATGTTCTCTGA
TGAGGCACAATCCCTTTTGTCTCCTATCCAGGACGCGGCCAAGGAGTGCT
CTTCTTGCACGATTCAGCTTTTGGTGCCCTCGAAGGCGTACACCCTGGGC
AGCAGCGCGCAGATCTGTATGACTTGTAGCTAAAGATAAGTTGTTATCTG
CCGCACCTCACAGAAACAATACCATGGCCGGCGACTGGGGGATGACCGTT
CTCAAGCTAAGTTTGCTAAGTGTCGCTTTGACGCTTTTAGCCAGCATGGG
ATCGCAGCCTTCATACAACTTTCCTATTGCCTTATTAGGCGTATGGGTGC
CTCACATCCCGAAACCGTTTTTGACTTCCCTTTTattcgttctcctccct
gtcgctaTGCTTCTTGACATACTTTGGGCGAGCCTTTACGGCCCATATCT
TAACAGTGGGGCACCTCTCCTCGCTTTGATATTGACCGTCTTGAATCTGT
TTCTGAAAGTTCCCTGGTCATACGCGGCCTGGGAGCTGATGAACGAGACT
GGAGGGAATCCAATGGTTCTTATCAATCCAGAACTCGCGATTGGAGGCGC
AGGTTTGGGGGATGGCTCGCATGAACGAATCAATGACATCTAAGTGTAAA
GTACGCCGCAGAATGGTGGTCAGATGAAGCTATCACAGCAAACCTCTTGG
TCTCAGAGCGTATGCAGTCGACCGTTGACAAAGGATTTTCGATTTCATTT
CAAGCTAATTCTTTGATGGGTCATCGGGAATCTCGCCGTCAAAATCCGTC
AGTCGCTATCTTTCTTATGCTTCTTctgcttcttgtccttcttttttGGT
GAAACCACCGG
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Coding sequence (CDS) from alignment at CM002464.1:453201..454061+

>rna4826 ID=rna4826|Name=rna4826|organism=Nannochloropsis gaditana|type=CDS|length=420bp|location=Sequence derived from alignment at CM002464.1:453201..454061+ (Nannochloropsis gaditana)
ATGGCCGGCGACTGGGGGATGACCGTTCTCAAGCTAAGTTTGCTAAGTGT
CGCTTTGACGCTTTTAGCCAGCATGGGATCGCAGCCTTCATACAACTTTC
CTATTGCCTTATTAGGCGTATGGGTGCCTCACATCCCGAAACCGTTTTTG
ACTTCCCTTTTattcgttctcctccctgtcgctaTGCTTCTTGACATACT
TTGGGCGAGCCTTTACGGCCCATATCTTAACAGTGGGGCACCTCTCCTCG
CTTTGATATTGACCGTCTTGAATCTGTTTCTGAAAGTTCCCTGGTCATAC
GCGGCCTGGGAGCTGATGAACGAGACTGGAGGGAATCCAATGGTTCTTAT
CAATCCAGAACTCGCGATTGGAGGCGCAGGTTTGGGGGATGGCTCGCATG
AACGAATCAATGACATCTAA
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Synonyms
Publications