rna4821, rna4821 (mRNA) Nannochloropsis gaditana

Overview
Namerna4821
Unique Namerna4821
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1794
Alignment locationCM002464.1:446387..448492 -

Link to JBrowse

Properties
Property NameValue
Productacid phosphatase
Orig transcript idgnl|cribi|Naga_100054g31.5573.mrna
Orig protein idgnl|cribi|Naga_100054g31.5573
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:446387..448492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100054g31gene4656Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25881.1cds4809Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4821rna4821-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4821 ID=rna4821|Name=rna4821|organism=Nannochloropsis gaditana|type=mRNA|length=1794bp
TACCAGCAGGTTTTATCTTTCAGCGCCTTGCTTGCCCTTGATTGCTCACG
CGGGAGTAGCCGCATTGGGGGGGAATGCGACAATATCTCGATACTTTCTC
ACTACTTCACCTTCTCATTTGTGAGCTCTTCTTGGCCCGAGGACATACGG
AGTCAACAAGCCTTAACTTCCTTTCGATCGGAGATCATGGCCTCCGTAAT
ATGGAGACAGAAGCCGTGGCGAGGCGAATGGCTCTTGAGAAAGAAGCAAT
AAACGCCTCGTTCGTGTTACTGGGTGGTGACCAATTTTATCCGGATGGCG
TGTCCAGTGTTGAAGACCCGCTCTGGAACACAACATTCAGGGATCTTTTT
ACCCCCGAGGCATTTCCTGTTCCTTTTTACCCCATCCGCGGCAATCACGA
CTACCACTCTAGCAACCCGGATGCCCAGCTCGAGTACTACGACACGCACG
GCGTCGATGGTCGATGGATCTTCCCCGCCGCCTACTACCTTCTGCATGAA
GTTCTCGGCGACGGCACCACCATTGACTTCATATTTCTGGACACCCCGCT
CCTGGTTCCCGAGGAAGCCGAGACAGACGGCGCCCTCCACATGCCTCGTG
AAACGACCAGGCGCCGCGCCCAGCAATACGCCTGGCTCGAAAGCGCCCTG
GCAAGGAGTCGGGCAGACTGGCTCCTTGTCTTCGGACACCACCCTGTTTT
CTCGACCGGAGAGCATGGCGACACGCCAGGGCTGGTGAGGCATCTCCTGC
CCCTGCTCGGTAAGCATCGCGTGGACATGTACATGTCTGGCCACGACCAC
AGCCTCCAGCACTTGCAGCACCACCCAGTGACCCCGACGCAGTTTTTTGT
GAATGGCAACGGGGCCAAGCTAGGAAGTGTGGGCCATGTGACGCAAGCGG
CCCATGTCAAAGAGGCGGCTGTGCGCCTGGGTTTCATGTCGCATCATATC
ACGAAATCGAAGCTGTGTACTCGCGCCATTGACGCCCAGGGGAACGTTGT
GTTTGAGCACACACAGGAAGCGCAGAGGCGGCTCATCCTTCCCGCAGACA
CAATAGAGGACGATGAAATGGGAAGGACGGGGGACTCAATGCAAAGCAAG
AAGGGTCCGACCCGGAATTCAAATGAGGAGTCGCTTGAGCCTCATCGAGG
CCAGAAATCCTCTCGGGCGCGGTCCCATGTTCGGCGAAGGCGTTATGACA
ACGTCGAGGTGACCACCTACAGCAGGGAAGCTTATGTAACAGACCAGCGG
GGTTCACTCGGGAGAAGCCAAAACATAGCCCTGATCTTTTTAGGATTGAT
TGGCCTTATGTCATTGGTATTGCTATTTGTTTACACCAGAAGACAGGCGG
TTGCACCAAGTCACCGCGTCCGCCGTACCCGGTCTCGATATTCACGCTTT
ATGGATACCGGATGTAGCATTGGAGATAGATCAGATCCTCCAAGAAATTC
GACATGATTGCCTGTGTCGTGTACTCGTAGGATAAATTGTCTTGTCCGTC
GACGAACAGGAAGCTCGTCCGTTTCGCTCACAATTTCATCTAAATCGAGG
AAATATCTCAAATCAAATTTGTCAATTACAACTTAAGTAAATGTTGAAAC
AAGTGGGCCAAATAAAACATGGTGTCTTGCTTCGTTTCGTAGACGAAAAA
TGTGTGTTCGGGAGGGTTCACTTCATGTCAACGAGAAGGAAGATGCCACC
TCGACACACGCAATTTTGAGACTGTGATATCGTAAATGGAACAAAACGCT
AATCGTGAAGCCTTTGGGAATTAAATTTCCCTGTCCTATTGAAA
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protein sequence of rna4821

>rna4821-protein ID=rna4821-protein|Name=rna4821|organism=Nannochloropsis gaditana|type=polypeptide|length=288bp
MPRETTRRRAQQYAWLESALARSRADWLLVFGHHPVFSTGEHGDTPGLVR
HLLPLLGKHRVDMYMSGHDHSLQHLQHHPVTPTQFFVNGNGAKLGSVGHV
TQAAHVKEAAVRLGFMSHHITKSKLCTRAIDAQGNVVFEHTQEAQRRLIL
PADTIEDDEMGRTGDSMQSKKGPTRNSNEESLEPHRGQKSSRARSHVRRR
RYDNVEVTTYSREAYVTDQRGSLGRSQNIALIFLGLIGLMSLVLLFVYTR
RQAVAPSHRVRRTRSRYSRFMDTGCSIGDRSDPPRNST
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mRNA from alignment at CM002464.1:446387..448492-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4821 ID=rna4821|Name=rna4821|organism=Nannochloropsis gaditana|type=mRNA|length=2106bp|location=Sequence derived from alignment at CM002464.1:446387..448492- (Nannochloropsis gaditana)
TACCAGCAGGTTTTATCTTTCAGCGCCTTGCTTGCCCTTGATTGCTCACG
CGGGAGTAGCCGCATTGGGGGGGAATGCGACAATATCTCGATACTTTCTC
ACTACTTCACCTTCTCATTTGTGAGCTCTTCTTGGCCCGAGGACATACGG
AGTCAACAAGCCTTAACTTCCTTTCGGTAAGATGGAATGCCCATCCCTCC
TCTAAGCTAAGCTGCTGCACCTCGCTGGGACATCCAGCTCTATAGAGGAA
GAAGTCAACTTCTACGGTCTCCAGTTCACCGGTAATTTTTTTAACGCACT
GCTTCATATTCCCATAACACAGATCGGAGATCATGGCCTCCGTAATATGG
AGACAGAAGCCGTGGCGAGGCGAATGGCTCTTGAGAAAGAAGCAATAAAC
GCCTCGTTCGTGTTACTGGGTGGTGGTAAGTAGGCCCCCGCTTTTTAGTA
CGTGGTGAGTTTTGTCTGTCTTAACATAAGTTTTCTATAAGTAACGCGTG
TATCGCGTTGATGCGCCATGGAGAATATTGATAGCTCATTCCAACATTTT
TGTGCGCTCATAATTTTCATCTTGTCACCGACACCAAACAGACCAATTTT
ATCCGGATGGCGTGTCCAGTGTTGAAGACCCGCTCTGGAACACAACATTC
AGGGATCTTTTTACCCCCGAGGCATTTCCTGTTCCTTTTTACCCCATCCG
CGGCAATCACGACTACCACTCTAGCAACCCGGATGCCCAGCTCGAGTACT
ACGACACGCACGGCGTCGATGGTCGATGGATCTTCCCCGCCGCCTACTAC
CTTCTGCATGAAGTTCTCGGCGACGGCACCACCATTGACTTCATATTTCT
GGACACCCCGCTCCTGGTTCCCGAGGAAGCCGAGACAGACGGCGCCCTCC
ACATGCCTCGTGAAACGACCAGGCGCCGCGCCCAGCAATACGCCTGGCTC
GAAAGCGCCCTGGCAAGGAGTCGGGCAGACTGGCTCCTTGTCTTCGGACA
CCACCCTGTTTTCTCGACCGGAGAGCATGGCGACACGCCAGGGCTGGTGA
GGCATCTCCTGCCCCTGCTCGGTAAGCATCGCGTGGACATGTACATGTCT
GGCCACGACCACAGCCTCCAGCACTTGCAGCACCACCCAGTGACCCCGAC
GCAGTTTTTTGTGAATGGCAACGGGGCCAAGCTAGGAAGTGTGGGCCATG
TGACGCAAGCGGCCCATGTCAAAGAGGCGGCTGTGCGCCTGGGTTTCATG
TCGCATCATATCACGAAATCGAAGCTGTGTACTCGCGCCATTGACGCCCA
GGGGAACGTTGTGTTTGAGCACACACAGGAAGCGCAGAGGCGGCTCATCC
TTCCCGCAGACACAATAGAGGACGATGAAATGGGAAGGACGGGGGACTCA
ATGCAAAGCAAGAAGGGTCCGACCCGGAATTCAAATGAGGAGTCGCTTGA
GCCTCATCGAGGCCAGAAATCCTCTCGGGCGCGGTCCCATGTTCGGCGAA
GGCGTTATGACAACGTCGAGGTGACCACCTACAGCAGGGAAGCTTATGTA
ACAGACCAGCGGGGTTCACTCGGGAGAAGCCAAAACATAGCCCTGATCTT
TTTAGGATTGATTGGCCTTATGTCATTGGTATTGCTATTTGTTTACACCA
GAAGACAGGCGGTTGCACCAAGTCACCGCGTCCGCCGTACCCGGTCTCGA
TATTCACGCTTTATGGATACCGGATGTAGCATTGGAGATAGATCAGATCC
TCCAAGAAATTCGACATGATTGCCTGTGTCGTGTACTCGTAGGATAAATT
GTCTTGTCCGTCGACGAACAGGAAGCTCGTCCGTTTCGCTCACAATTTCA
TCTAAATCGAGGAAATATCTCAAATCAAATTTGTCAATTACAACTTAAGT
AAATGTTGAAACAAGTGGGCCAAATAAAACATGGTGTCTTGCTTCGTTTC
GTAGACGAAAAATGTGTGTTCGGGAGGGTTCACTTCATGTCAACGAGAAG
GAAGATGCCACCTCGACACACGCAATTTTGAGACTGTGATATCGTAAATG
GAACAAAACGCTAATCGTGAAGCCTTTGGGAATTAAATTTCCCTGTCCTA
TTGAAA
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Coding sequence (CDS) from alignment at CM002464.1:446387..448492-

>rna4821 ID=rna4821|Name=rna4821|organism=Nannochloropsis gaditana|type=CDS|length=867bp|location=Sequence derived from alignment at CM002464.1:446387..448492- (Nannochloropsis gaditana)
ATGCCTCGTGAAACGACCAGGCGCCGCGCCCAGCAATACGCCTGGCTCGA
AAGCGCCCTGGCAAGGAGTCGGGCAGACTGGCTCCTTGTCTTCGGACACC
ACCCTGTTTTCTCGACCGGAGAGCATGGCGACACGCCAGGGCTGGTGAGG
CATCTCCTGCCCCTGCTCGGTAAGCATCGCGTGGACATGTACATGTCTGG
CCACGACCACAGCCTCCAGCACTTGCAGCACCACCCAGTGACCCCGACGC
AGTTTTTTGTGAATGGCAACGGGGCCAAGCTAGGAAGTGTGGGCCATGTG
ACGCAAGCGGCCCATGTCAAAGAGGCGGCTGTGCGCCTGGGTTTCATGTC
GCATCATATCACGAAATCGAAGCTGTGTACTCGCGCCATTGACGCCCAGG
GGAACGTTGTGTTTGAGCACACACAGGAAGCGCAGAGGCGGCTCATCCTT
CCCGCAGACACAATAGAGGACGATGAAATGGGAAGGACGGGGGACTCAAT
GCAAAGCAAGAAGGGTCCGACCCGGAATTCAAATGAGGAGTCGCTTGAGC
CTCATCGAGGCCAGAAATCCTCTCGGGCGCGGTCCCATGTTCGGCGAAGG
CGTTATGACAACGTCGAGGTGACCACCTACAGCAGGGAAGCTTATGTAAC
AGACCAGCGGGGTTCACTCGGGAGAAGCCAAAACATAGCCCTGATCTTTT
TAGGATTGATTGGCCTTATGTCATTGGTATTGCTATTTGTTTACACCAGA
AGACAGGCGGTTGCACCAAGTCACCGCGTCCGCCGTACCCGGTCTCGATA
TTCACGCTTTATGGATACCGGATGTAGCATTGGAGATAGATCAGATCCTC
CAAGAAATTCGACATGA
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Synonyms
Publications