|
|
Properties
| Property Name | Value |
|---|
| Product | acid phosphatase |
| Orig transcript id | gnl|cribi|Naga_100054g31.5574.mrna |
| Orig protein id | gnl|cribi|Naga_100054g31.5574 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002464.1 | supercontig | CM002464.1:446387..448492 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4820 ID=rna4820|Name=rna4820|organism=Nannochloropsis gaditana|type=mRNA|length=2674bp
ACACGACACGTTTTTCGTGGATTGCTAGTTAGAACATCATACGTGAAAGT
TCGAAATCAATGATGTTGTGCATTCCAGGCATCTTTAGTTTGTCAAACTC
AGTCATCGCCTGCTGTGGAGAGACTTGCAGCTATAATTCTGGCGAAGGCG
AGCACACACTGCCAAGCAACCTCAAGCGCTAGCTGCCCTGTATTATAGGA
AAAGTGTTCGGTGGTCTCTAATGAAGAATTGAACTGCAACCGAGACTCCG
ACTACTTTGACAGCGGCTGGCGAAGAGATGAAATTATTGCGATTGGCAAT
AGCAGTGGTAGTGATGGGAGGGAGTTGGGATATTAAATGCAACCAAAAAG
GAAGCAAAAACGGTATCGTGCTGGCCGAAGCCCGCAGAAGAAGAAGACAT
AAACCGTCCTCCCCTCCAAACCTGGAGCCGGCTGGTATCGTCCAGACGAC
CGAGCAAAAAGTGAAAGCTCCCAACGAGAAATATAATTATAATCAGGTGA
TATATCTCTCCAATCTATTTTATGAAGCGCAGCGTGCAGGCAAGCTTCCC
TCAGACAATCGCATCCCCTGGCGGCGAGACTCGAATATCGCGGACGGGTT
CGATAGCGATGTGGAATTGAGTGGAGGTTACTACGATGCGGGAGACTACC
TCATATTTGGATGGCCTCTTGCCTCGTCTACAACAGTGTTAATATGGGGT
CTTTTAGAATATGAGGACGCCTACACGGAGGCGGGAGAACTGGGGCATAT
GCTTGCGACGGTCAAATGGCCCCTTGACTGGCTACTTAAAGCGCACGTGG
GCCCGGACGCGCTGTACGTTCAAGTTGGGGATGGCAAAGTCGAGCATCGG
TACTGGGGTCGCCCGGAGTTTGAGAGCAAGCCCCGTCCTGCTTTGCTGGT
CAACGCCTCCGTCCCAGGCACCGAACCCCTAGCGGACGCAGCTGCCGCGA
TGGCGGCCGGGTTTCTGGCGTTCCAGCATCGCGACCCAGTCTACGCCCAC
ACGCTGCTGCTGCATGCGCAGCAGCTTTTCGAGGCCGCCATGGCGCACCC
GAGGAAGTTTACCCTATCGTCGCCTTACTACGAGTCGAGTGGATACAGAG
ACGAGCTGGCATGGGCCGCGGCCTGGCTCCATAAAGCGACCGGGTGCGCG
TCGTATCTGTCTCAAGCCCTTAATTTAGCCGAAATTTTCAATAAAAGCGA
TAACATGGGGGCTTTTGGATGGGATAGCAAGGATGCGGGCGTCTACTTAC
TCTTGTATCAGCTGACGAGGGACACGAAGCACGCGAAGGTCTTCGCGTCC
TACCTGGCCGACTGGCTGCCTCAAGCGTCGAGTGCGACCGCCATCAAGCG
CACGCCCAGAGGTCTGACATACTACTTGACCTGGGGCCCGCTTCGATGGG
CGGCCAACACGGCTTTTTTGGCCCTGCTGGCGGCAGACATGGGTCTGAGT
CCCGGGCCGTACCGGGCGTTCGCGCGTTCTCAGATTCATTACATGTTGGG
GGACAACGGAAATTTCTCGTACGTGGTAGGCTTTGGTTCTACCTTTCCAA
AAGCAATCCACCACAGGGCCGCGTCTTGTGGGAGATATGGCTGCATTTGC
GACACCACGCCCTCGGCTAATACGCTGTACGGGGCCCTCGTGGGAGGGCC
TGACGAAAAGGATATGTATTTAGACGACTGTCGGGACTACAAACACACTG
AGGTCAGTGTGGATTATAATGCTGGATTTCAAGGAGCGGTGGCAGGCTTG
AAGCATCTGTCACTAATGGGGTTACTGGAGTCATTTTAAGACGGAAGGGG
GCTGGAAAAGAAGACATGGACGGTCAGGAAGCTGGCCTGTCACAACCTCC
ACGGTAAGACCAAGAAGTTTCCAGGGCATGGAAGATGTAGAATTGGGATG
AAGCTTATAAATGTGCGGCGCTTTGTGGTGCACAGCGGCCCTCTAAGAGT
ATCTTTCCATGTTGACGTGACGACTGGGGGCGATCTGCTCGGTCTTCACA
AAAATTGGATTGTGCGAGAAACGCACAATCAACGGAGGAGGGGCAGACTG
CAATTCTCGCTAAATGTATGGCTAACATTAAATTCGTTCTATCTCTTTCG
TCAATGGAGAGAACGTCAGAATTACATATTTGTCTCAAGAACGACTTGTG
AAACGCGAGGGGCGTTTGAGCGTTGCAATTAGCGTGTCTACAATGCGACG
CCTTCCATAAGACACTGCGAAACACTTCATGAATTGATATTAGATGTGGG
TTTAATCAAAGGGATGGCGATACGCCCTACCCGACACAAAGCTCTTGTAA
ATTTCCATGTAAGAGATTTCCTTCGAGCCGCCTGGAGAAAATTATATATG
TTTCGGCGGAAATTCCGACCTGTATCATCCGACTTCCAAGAAAAGCACCG
CTGTACACAGACAGTCTTGTATCGGAAAGATATGCATGTAAGAAGGGTAT
GTTGTTGACGCATGGATTTCCGAAATTAATTGAAAATTGCATACGGCGCC
ACCAGAGTGCGACTCTCATCAGAAAAGGTTAACGATGAAATTTGAGAGGC
ACAAAATTACCCGTATTTAAACAAAGTCCAAGTCGGATTTAAAAAGCATC
AACACTGCAGGAGCAATCAAACTATCCCTGCACTCCAGACGAGGCCATTG
CCTCTCTACCACTTTTGCGTGACG back to topprotein sequence of rna4820 >rna4820-protein ID=rna4820-protein|Name=rna4820|organism=Nannochloropsis gaditana|type=polypeptide|length=460bp
MRQYLDTFSLLHLLICELFLARGHTESTSLNFLSIGDHGLRNMETEAVAR
RMALEKEAINASFVLLGGDQFYPDGVSSVEDPLWNTTFRDLFTPEAFPVP
FYPIRGNHDYHSSNPDAQLEYYDTHGVDGRWIFPAAYYLLHEVLGDGTTI
DFIFLDTPLLVPEEAETDGALHMPRETTRRRAQQYAWLESALARSRADWL
LVFGHHPVFSTGEHGDTPGLVRHLLPLLGKHRVDMYMSGHDHSLQHLQHH
PVTPTQFFVNGNGAKLGSVGHVTQAAHVKEAAVRLGFMSHHITKSKLCTR
AIDAQGNVVFEHTQEAQRRLILPADTIEDDEMGRTGDSMQSKKGPTRNSN
EESLEPHRGQKSSRARSHVRRRRYDNVEVTTYSREAYVTDQRGSLGRSQN
IALIFLGLIGLMSLVLLFVYTRRQAVAPSHRVRRTRSRYSRFMDTGCSIG
DRSDPPRNST back to topmRNA from alignment at CM002464.1:446387..448492- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4820 ID=rna4820|Name=rna4820|organism=Nannochloropsis gaditana|type=mRNA|length=2106bp|location=Sequence derived from alignment at CM002464.1:446387..448492- (Nannochloropsis gaditana)
TACCAGCAGGTTTTATCTTTCAGCGCCTTGCTTGCCCTTGATTGCTCACG
CGGGAGTAGCCGCATTGGGGGGGAATGCGACAATATCTCGATACTTTCTC
ACTACTTCACCTTCTCATTTGTGAGCTCTTCTTGGCCCGAGGACATACGG
AGTCAACAAGCCTTAACTTCCTTTCGGTAAGATGGAATGCCCATCCCTCC
TCTAAGCTAAGCTGCTGCACCTCGCTGGGACATCCAGCTCTATAGAGGAA
GAAGTCAACTTCTACGGTCTCCAGTTCACCGGTAATTTTTTTAACGCACT
GCTTCATATTCCCATAACACAGATCGGAGATCATGGCCTCCGTAATATGG
AGACAGAAGCCGTGGCGAGGCGAATGGCTCTTGAGAAAGAAGCAATAAAC
GCCTCGTTCGTGTTACTGGGTGGTGGTAAGTAGGCCCCCGCTTTTTAGTA
CGTGGTGAGTTTTGTCTGTCTTAACATAAGTTTTCTATAAGTAACGCGTG
TATCGCGTTGATGCGCCATGGAGAATATTGATAGCTCATTCCAACATTTT
TGTGCGCTCATAATTTTCATCTTGTCACCGACACCAAACAGACCAATTTT
ATCCGGATGGCGTGTCCAGTGTTGAAGACCCGCTCTGGAACACAACATTC
AGGGATCTTTTTACCCCCGAGGCATTTCCTGTTCCTTTTTACCCCATCCG
CGGCAATCACGACTACCACTCTAGCAACCCGGATGCCCAGCTCGAGTACT
ACGACACGCACGGCGTCGATGGTCGATGGATCTTCCCCGCCGCCTACTAC
CTTCTGCATGAAGTTCTCGGCGACGGCACCACCATTGACTTCATATTTCT
GGACACCCCGCTCCTGGTTCCCGAGGAAGCCGAGACAGACGGCGCCCTCC
ACATGCCTCGTGAAACGACCAGGCGCCGCGCCCAGCAATACGCCTGGCTC
GAAAGCGCCCTGGCAAGGAGTCGGGCAGACTGGCTCCTTGTCTTCGGACA
CCACCCTGTTTTCTCGACCGGAGAGCATGGCGACACGCCAGGGCTGGTGA
GGCATCTCCTGCCCCTGCTCGGTAAGCATCGCGTGGACATGTACATGTCT
GGCCACGACCACAGCCTCCAGCACTTGCAGCACCACCCAGTGACCCCGAC
GCAGTTTTTTGTGAATGGCAACGGGGCCAAGCTAGGAAGTGTGGGCCATG
TGACGCAAGCGGCCCATGTCAAAGAGGCGGCTGTGCGCCTGGGTTTCATG
TCGCATCATATCACGAAATCGAAGCTGTGTACTCGCGCCATTGACGCCCA
GGGGAACGTTGTGTTTGAGCACACACAGGAAGCGCAGAGGCGGCTCATCC
TTCCCGCAGACACAATAGAGGACGATGAAATGGGAAGGACGGGGGACTCA
ATGCAAAGCAAGAAGGGTCCGACCCGGAATTCAAATGAGGAGTCGCTTGA
GCCTCATCGAGGCCAGAAATCCTCTCGGGCGCGGTCCCATGTTCGGCGAA
GGCGTTATGACAACGTCGAGGTGACCACCTACAGCAGGGAAGCTTATGTA
ACAGACCAGCGGGGTTCACTCGGGAGAAGCCAAAACATAGCCCTGATCTT
TTTAGGATTGATTGGCCTTATGTCATTGGTATTGCTATTTGTTTACACCA
GAAGACAGGCGGTTGCACCAAGTCACCGCGTCCGCCGTACCCGGTCTCGA
TATTCACGCTTTATGGATACCGGATGTAGCATTGGAGATAGATCAGATCC
TCCAAGAAATTCGACATGATTGCCTGTGTCGTGTACTCGTAGGATAAATT
GTCTTGTCCGTCGACGAACAGGAAGCTCGTCCGTTTCGCTCACAATTTCA
TCTAAATCGAGGAAATATCTCAAATCAAATTTGTCAATTACAACTTAAGT
AAATGTTGAAACAAGTGGGCCAAATAAAACATGGTGTCTTGCTTCGTTTC
GTAGACGAAAAATGTGTGTTCGGGAGGGTTCACTTCATGTCAACGAGAAG
GAAGATGCCACCTCGACACACGCAATTTTGAGACTGTGATATCGTAAATG
GAACAAAACGCTAATCGTGAAGCCTTTGGGAATTAAATTTCCCTGTCCTA
TTGAAA back to topCoding sequence (CDS) from alignment at CM002464.1:446387..448492- >rna4820 ID=rna4820|Name=rna4820|organism=Nannochloropsis gaditana|type=CDS|length=4149bp|location=Sequence derived from alignment at CM002464.1:446387..448492- (Nannochloropsis gaditana)
ACCAATTTTATCCGGATGGCGTGTCCAGTGTTGAAGACCCGCTCTGGAAC
ACAACATTCAGGGATCTTTTTACCCCCGAGGCATTTCCTGTTCCTTTTTA
CCCCATCCGCGGCAATCACGACTACCACTCTAGCAACCCGGATGCCCAGC
TCGAGTACTACGACACGCACGGCGTCGATGGTCGATGGATCTTCCCCGCC
GCCTACTACCTTCTGCATGAAGTTCTCGGCGACGGCACCACCATTGACTT
CATATTTCTGGACACCCCGCTCCTGGTTCCCGAGGAAGCCGAGACAGACG
GCGCCCTCCACATGCCTCGTGAAACGACCAGGCGCCGCGCCCAGCAATAC
GCCTGGCTCGAAAGCGCCCTGGCAAGGAGTCGGGCAGACTGGCTCCTTGT
CTTCGGACACCACCCTGTTTTCTCGACCGGAGAGCATGGCGACACGCCAG
GGCTGGTGAGGCATCTCCTGCCCCTGCTCGGTAAGCATCGCGTGGACATG
TACATGTCTGGCCACGACCACAGCCTCCAGCACTTGCAGCACCACCCAGT
GACCCCGACGCAGTTTTTTGTGAATGGCAACGGGGCCAAGCTAGGAAGTG
TGGGCCATGTGACGCAAGCGGCCCATGTCAAAGAGGCGGCTGTGCGCCTG
GGTTTCATGTCGCATCATATCACGAAATCGAAGCTGTGTACTCGCGCCAT
TGACGCCCAGGGGAACGTTGTGTTTGAGCACACACAGGAAGCGCAGAGGC
GGCTCATCCTTCCCGCAGACACAATAGAGGACGATGAAATGGGAAGGACG
GGGGACTCAATGCAAAGCAAGAAGGGTCCGACCCGGAATTCAAATGAGGA
GTCGCTTGAGCCTCATCGAGGCCAGAAATCCTCTCGGGCGCGGTCCCATG
TTCGGCGAAGGCGTTATGACAACGTCGAGGTGACCACCTACAGCAGGGAA
GCTTATGTAACAGACCAGCGGGGTTCACTCGGGAGAAGCCAAAACATAGC
CCTGATCTTTTTAGGATTGATTGGCCTTATGTCATTGGTATTGCTATTTG
TTTACACCAGAAGACAGGCGGTTGCACCAAGTCACCGCGTCCGCCGTACC
CGGTCTCGATATTCACGCTTTATGGATACCGGATGTAGCATTGGAGATAG
ATCAGATCCTCCAAGAAATTCGACATGAATCGGAGATCATGGCCTCCGTA
ATATGGAGACAGAAGCCGTGGCGAGGCGAATGGCTCTTGAGAAAGAAGCA
ATAAACGCCTCGTTCGTGTTACTGGGTGGTGATGCGACAATATCTCGATA
CTTTCTCACTACTTCACCTTCTCATTTGTGAGCTCTTCTTGGCCCGAGGA
CATACGGAGTCAACAAGCCTTAACTTCCTTTCGACCAATTTTATCCGGAT
GGCGTGTCCAGTGTTGAAGACCCGCTCTGGAACACAACATTCAGGGATCT
TTTTACCCCCGAGGCATTTCCTGTTCCTTTTTACCCCATCCGCGGCAATC
ACGACTACCACTCTAGCAACCCGGATGCCCAGCTCGAGTACTACGACACG
CACGGCGTCGATGGTCGATGGATCTTCCCCGCCGCCTACTACCTTCTGCA
TGAAGTTCTCGGCGACGGCACCACCATTGACTTCATATTTCTGGACACCC
CGCTCCTGGTTCCCGAGGAAGCCGAGACAGACGGCGCCCTCCACATGCCT
CGTGAAACGACCAGGCGCCGCGCCCAGCAATACGCCTGGCTCGAAAGCGC
CCTGGCAAGGAGTCGGGCAGACTGGCTCCTTGTCTTCGGACACCACCCTG
TTTTCTCGACCGGAGAGCATGGCGACACGCCAGGGCTGGTGAGGCATCTC
CTGCCCCTGCTCGGTAAGCATCGCGTGGACATGTACATGTCTGGCCACGA
CCACAGCCTCCAGCACTTGCAGCACCACCCAGTGACCCCGACGCAGTTTT
TTGTGAATGGCAACGGGGCCAAGCTAGGAAGTGTGGGCCATGTGACGCAA
GCGGCCCATGTCAAAGAGGCGGCTGTGCGCCTGGGTTTCATGTCGCATCA
TATCACGAAATCGAAGCTGTGTACTCGCGCCATTGACGCCCAGGGGAACG
TTGTGTTTGAGCACACACAGGAAGCGCAGAGGCGGCTCATCCTTCCCGCA
GACACAATAGAGGACGATGAAATGGGAAGGACGGGGGACTCAATGCAAAG
CAAGAAGGGTCCGACCCGGAATTCAAATGAGGAGTCGCTTGAGCCTCATC
GAGGCCAGAAATCCTCTCGGGCGCGGTCCCATGTTCGGCGAAGGCGTTAT
GACAACGTCGAGGTGACCACCTACAGCAGGGAAGCTTATGTAACAGACCA
GCGGGGTTCACTCGGGAGAAGCCAAAACATAGCCCTGATCTTTTTAGGAT
TGATTGGCCTTATGTCATTGGTATTGCTATTTGTTTACACCAGAAGACAG
GCGGTTGCACCAAGTCACCGCGTCCGCCGTACCCGGTCTCGATATTCACG
CTTTATGGATACCGGATGTAGCATTGGAGATAGATCAGATCCTCCAAGAA
ATTCGACATGAATCGGAGATCATGGCCTCCGTAATATGGAGACAGAAGCC
GTGGCGAGGCGAATGGCTCTTGAGAAAGAAGCAATAAACGCCTCGTTCGT
GTTACTGGGTGGTGATGCGACAATATCTCGATACTTTCTCACTACTTCAC
CTTCTCATTTGTGAGCTCTTCTTGGCCCGAGGACATACGGAGTCAACAAG
CCTTAACTTCCTTTCGACCAATTTTATCCGGATGGCGTGTCCAGTGTTGA
AGACCCGCTCTGGAACACAACATTCAGGGATCTTTTTACCCCCGAGGCAT
TTCCTGTTCCTTTTTACCCCATCCGCGGCAATCACGACTACCACTCTAGC
AACCCGGATGCCCAGCTCGAGTACTACGACACGCACGGCGTCGATGGTCG
ATGGATCTTCCCCGCCGCCTACTACCTTCTGCATGAAGTTCTCGGCGACG
GCACCACCATTGACTTCATATTTCTGGACACCCCGCTCCTGGTTCCCGAG
GAAGCCGAGACAGACGGCGCCCTCCACATGCCTCGTGAAACGACCAGGCG
CCGCGCCCAGCAATACGCCTGGCTCGAAAGCGCCCTGGCAAGGAGTCGGG
CAGACTGGCTCCTTGTCTTCGGACACCACCCTGTTTTCTCGACCGGAGAG
CATGGCGACACGCCAGGGCTGGTGAGGCATCTCCTGCCCCTGCTCGGTAA
GCATCGCGTGGACATGTACATGTCTGGCCACGACCACAGCCTCCAGCACT
TGCAGCACCACCCAGTGACCCCGACGCAGTTTTTTGTGAATGGCAACGGG
GCCAAGCTAGGAAGTGTGGGCCATGTGACGCAAGCGGCCCATGTCAAAGA
GGCGGCTGTGCGCCTGGGTTTCATGTCGCATCATATCACGAAATCGAAGC
TGTGTACTCGCGCCATTGACGCCCAGGGGAACGTTGTGTTTGAGCACACA
CAGGAAGCGCAGAGGCGGCTCATCCTTCCCGCAGACACAATAGAGGACGA
TGAAATGGGAAGGACGGGGGACTCAATGCAAAGCAAGAAGGGTCCGACCC
GGAATTCAAATGAGGAGTCGCTTGAGCCTCATCGAGGCCAGAAATCCTCT
CGGGCGCGGTCCCATGTTCGGCGAAGGCGTTATGACAACGTCGAGGTGAC
CACCTACAGCAGGGAAGCTTATGTAACAGACCAGCGGGGTTCACTCGGGA
GAAGCCAAAACATAGCCCTGATCTTTTTAGGATTGATTGGCCTTATGTCA
TTGGTATTGCTATTTGTTTACACCAGAAGACAGGCGGTTGCACCAAGTCA
CCGCGTCCGCCGTACCCGGTCTCGATATTCACGCTTTATGGATACCGGAT
GTAGCATTGGAGATAGATCAGATCCTCCAAGAAATTCGACATGAATCGGA
GATCATGGCCTCCGTAATATGGAGACAGAAGCCGTGGCGAGGCGAATGGC
TCTTGAGAAAGAAGCAATAAACGCCTCGTTCGTGTTACTGGGTGGTGATG
CGACAATATCTCGATACTTTCTCACTACTTCACCTTCTCATTTGTGAGCT
CTTCTTGGCCCGAGGACATACGGAGTCAACAAGCCTTAACTTCCTTTCG back to top
|