rna482, rna482 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna482
Unique Name	rna482
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2335
Alignment location	CM002455.1:1208746..1211717 +

Link to JBrowse

Properties


Property Name	Value
Product	ectonucleoside triphosphate diphosphohydrolase 1
Orig transcript id	gnl\|cribi\|Naga_100090g12.8833.mrna
Orig protein id	gnl\|cribi\|Naga_100090g12.8833
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:1208746..1211717 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100090g12	gene465	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna482	rna482-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30184.1	cds482	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:1208746..1211717+
coding sequence from alignment at CM002455.1:1208746..1211717+

mRNA sequence

>rna482 ID=rna482|Name=rna482|organism=Nannochloropsis gaditana|type=mRNA|length=2335bp
GGCGCATGTTCGTATGCAGAAAAGCGTGTCTGCCCCGTTATTCCCCTAGA
AATCAGGTCAATTCAAAAATCAATGTGCATTAATCCTTGGTTCGGACATA
CTTCGAGAGGAATCGAGTCAGAAGTCCACTTTAAAATGGTTATATGGCGA
TCGCTCGGATGCTGATTTGGGCCCATCGTACCTCTGGAATTCTGTGTAAT
TCTGTGCTCGCCGGTTCGTCTACTCACGTTCACGTACTCACGCAAAGCCA
CCGAACATAACAAAGCCATAGGATGAGGCTCACTCTGGCCTCACTGGCCG
CTGGTATTGCAGGAGCGGTTTTTTCGATTGGCTCAATCGTTAACCTGGTC
GCCGCGGAAGCTGCTGAGATGGAGCTGCTGAATCAAGCCTCTGTCGATTT
GGACGTGTACTGGCGAGACGAGAATAGCGGCGGCACGTACACCCGAATCT
CCACAATCCCGAAGGGAACAAGTGGAGTTATTCAAACGTTTCAAGGTCAC
GGCTTTTTGCTGACTGGAAAGGGGCATGTGGTTGGCCCGTTGGACCGTCC
TAACTTCCTGCAGCAAATGAAGAGGCATCGTGTCCGTGCTTCGGACTCAT
CCCAAGAAGAGCTCATTTTCGAAGATTTAGATTTGGGCGGCGAAATCGAT
GCGCCGAAGGATGGGAGAGGAAAGCAACACAACGAGTCCACAGGTGCATC
CACATCCTCTGATGTCACCGCCCCGCCCCTCGAAGCGAATGTCCAACTAC
AGATCAGTAATCAAGCGGGTGGAGCTATATATATTTACTGGTTGCACCCA
GAGAGGGGTAGTTTTATTTTACTGAATACCATGTCTCAGGGGCAGAGCTT
CAAGCTGAACTCATTCGTCGGCCATCGCTTGTTAATCTCCCAAGTTCCTG
ATAATCACTTGGATCACAGCAAGGCGCCCAATATCATTGTGCATCATGAT
TCCGGAGCCTTTGATGTAGTTTCATCAAACGATATAACGGCAGACGTTAT
TGTCAAGAAGCATGAAGAGTCAGCCTCGAGGAAGACGGTTGCGGCCTTCC
CGATAGAGCAACCTCCTCCCCTTGTCAAGCCCCCTGCAACTTACCATAAA
AGTGTCACCGGACAGCAGGTGAAGGAAGCCCTAAAACAATGTGGAGGCGA
AGCATCATGTATCGTGGACGCCCTTTACCGTGGCAAACTTGCTCGAATTC
AGCGAAGTATTCAAAAGAGCATGACAGAGCGAGACGAGCTGCAAGAGCCT
TATCGAGACTATGCCTGCCTACATCACGAAACCATGGGACCTGAGGATAT
GAAGGTGACGTATTGGACATATCCGGAAGACAAATTTGGGGCGACTGATT
CACCTTCCCCGGTTTCCGGGGCCACTCCAAACAATAAAACCGTCCGCGTC
GACCACTATTTCGACAGCGAGTGGGGGAACGCACGCATTTACCTTTTGCA
CGACATCATCAGTCCTTCAGAATGTGCGGCTTTGAAAAACCGGAGCAGTG
GTCGCTTGATTCATGCCTCGGTCTCAGGTGAGCTCCCGGGGCAAAGAATT
ATCTCGTCTGTACGCAAGGCCAAGTCGGCGAGCATCTCTCCGGACTTGAA
GGACCCGACAGATATCCTGGCAACATTGCAACGTCGTGTTTTCGCTTTTG
CAAATGAGCACGGTTGTGGGGGTTACGAGAGTTTTGATTTGGCAGGTCAG
GAGTCTTTGAACGCGATAGTGTACGACGCCTCTGGTGATGAGTATCGCAT
GCATTGTGATGGATACTGTGATTCCAGCAAGTTTGTAAGAGGGGGACGGG
CAGCCACAATGGTGCTTTACTGCGAGGAAGGCGCACGAGGGGGACAGACT
AGCTTTACCAACGCTGATATCATGCTCAAGGGAAAGGCTGGTCAGGCTGC
TTTTTTTCACTATCGAGGTCCCGATGATTACATGGACGTTGGGTACACCA
AGCATAGTGGCTGTCCGCTAGTGGAAGGCAACAAACGCATTACAACACAA
TGGATCCGACGCGGTGTAACTGCTGCGTCTCCTTACTATTTATATACACC
AACGGGGGATAGGGACACAGGAGGAGCACAGTAGGCTAGGAAGTCGTCGA
AATCACCTTCAAAATATATTCTTCCACAGAGAAAGTACTTGTAAATCGCT
TTTAAAAAGAGTGAGAGCTTCACTCGTTGGAGTTCCTGGCATAAATGGTC
GGATTTTTGTTTTAGTATCTGCCGTTGCGCTATTCGTTTGGTCAATTTCA
CGCCTACTTTGAAATTAGTATTGGCATGCATACGATCAAATGCGAGCCAA
GCACATCGTTGAGGATGAACTCCGCACCGCATCAT

protein sequence of rna482

>rna482-protein ID=rna482-protein|Name=rna482|organism=Nannochloropsis gaditana|type=polypeptide|length=820bp
MSCYTGPEVDSPLQDDHKPKRQQRRTRPVPRLPSANPVHQPVTARRSGGI
GQNSMTTYICKWTLAWPLLLVTCCAMSICLPRGLAAAAVGSSSSSSSSII
SLHVLDRIRNQLGLAWAPPPNNYNAHHPQPSQQDAMQPQAFEGSPEQIHH
LEWGAGGVTSQELPASPGNIGMREGTGKGVEESHQYAVVIDGGSTGSRMF
VYRFFYPGRGAKREIECIASKKVTPGLSAFDGRPEEASEYMRPLFEHAAG
VIPGVYQSETLVFLQATAGMRLLSEASQESIYDHIYMDLAHPEGEKLPFP
FRLYRRNVGTLSGRLEGFYAALSVNYLTGRIDTHLERESVGATEGGDAED
TGGGSLAPTEGEDVGGSIRGSSASRGTRRGPTQTLVGALDLGGSSTQIVF
QHMEDTGGALDESDFWVQSYLAYGVDTIRYRLWSFLTRHVAPMDPALVAG
TAVENPCAFAGHEEWFKGHRLVGTGQANLCGKEIRRMLWDEEHEKCTPLQ
PCGLDGIEHPPLTGQFLAMSVFFFALDCMKQLGPSDLPHWPSPSIDEIEK
AAARFCAQSWSSLNTTATNHAFTRDDLLPYRCAEVVYIHTLLKHGYGFPG
DSRDVTFVLDIEGMEVEWTLGFALSEVPLDQEEAELGTAATPVHHHVYLD
EADKEEEQEQAAVEARRRRRVGDGRTGVKSVKMDLPEEQPELRGCEDMEG
RGQGVQGEPPRWESGWQSLTFNLSELHRLARAWHPQVGGGLVSGTWSWVE
IGACMVSSVGICLAIALILVYVRGDRDWSLCSPKSTPPASPVGRRTRQGC
VKEVWEPHEKDARKAELSPM

mRNA from alignment at CM002455.1:1208746..1211717+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna482 ID=rna482|Name=rna482|organism=Nannochloropsis gaditana|type=mRNA|length=2972bp|location=Sequence derived from alignment at CM002455.1:1208746..1211717+ (Nannochloropsis gaditana)
CCTGGTTGTGGAACGAGGACACTTTTGGGTGTATTTTTTCGTTCTCTTTC
GACGTTTTGTCCCCTGTTTCAATTGTTgtagagggaaaaggacatGTCCT
GACCTGGGAAAGGGATTGGCAAGCAGTGCATGCGAGGTCCACGACATAGT
GATCTTGAAGATCTGGCCTCCTTTGTCCCATTGCCGCGCGTTAGTTTCTG
GTCTTCCCAATCTCACAAAGCATTTCAATATATTTAATCCAGATGTCGTG
TTACACTGGCCCGGAGGTGGACTCGCCTTTGCAAGATGACCACAAGCCAA
AGCGACAGCAGAGACGGACCAGGCCGGTGCCCCGTTTGCCTAGCGCTAAT
CCCGTACATCAGCCTGTTACTGCCAGGCGCTCAGGGGGCATTGGGCAGAA
CTCTATGACGACGTACATATGTAAATGGACATTGGCGTGGCCGCTTCTCC
TAGTGACGTGTTGTGCGATGTCAATATGCCTTCCCAGAGGGTTGGCTGCC
GCGGCGGTAggctcttcatcctcctcttcttcctccatcatctCTTTACA
CGTCCTCGACCGCATAAGAAATCAGTTAGGACTCGCCTGGGCACCGCCTC
CAAACAATTACAATGCTCATCATCCGCAGCCATCGCAGCAAGACGCCATG
CAACCGCAAGCGTTCGAAGGCAGTCCCGAGCAGATTCACCACCTTGAatg
gggggccgggggcgtcACTTCACAAGAATTGCCCGCTTCGCCCGGCAATA
TCGGTATGCGAGAAGGAACGGGCAAGGGTGTAGAAGAATCGCACCAGTAC
GCCGTGGTGATTGACGgcgggagcacggggagccGGATGTTTGTCTACCG
TTTCTTCTACCCGGGGCGAGGGGCCAAACGAGAAATCGAGTGCATTGCCA
GCAAGAAGGTGACGCCGGGTCTTAGCGCTTTTGATGGGCGCCCGGAGGAA
GCCTCTGAATACATGCGGCCCCTTTTTGAGCATGCCGCGGGTGTGATTCC
CGGGGTCTACCAGAGCGAGACCCTAGTGTTCCTGCAGGCGACTGCGGGGA
TGCGCCTTCTCTCCGAGGCCTCGCAAGAGTCCATATACGATCACATATAC
ATGGATTTAGCCCATCCGGAAGGGGAGAAATTGCCGTTTCCCTTCCGCTT
GTATCGACGGAACGTGGGCACCTTGTCCGGGAGATTGGAAGGCTTTTACG
CCGCCTTATCGGTGAACTACCTGACTGGCCGGATCGACACCCATTTGGAA
CGGGAGTCGGTCGGTGCgacggaaggcggggacgCAGAGGACACAGGAGG
GGGCAGTTTGGCACCGacggagggtgaggatgtGGGAGGGTCCATTAGAG
GCAGCAGTGCCTCCAGGGGAACCAGGCGTGGCCCGACCCAGACGTTGGTC
GGGGCCTTGGACCTGGGGGGTTCCTCGACGCAGATCGTCTTCCAGCACAT
GGAGGACACGGGAGGGGCGCTGGACGAGTCAGATTTCTGGGTCCAGTCCT
ACTTGGCCTACGGCGTGGATACTATCCGGTATCGGCTGTGGTCCTTCCTG
ACCCGCCACGTCGCCCCCATGGATCCGGCCCTCGTCGCAGGAACCGCCGT
GGAGAACCCCTGCGCATTCGCGGGGCATGAGGAGTGGTTCAAAGGCCACC
GCTTGGTGGGCACGGGGCAGGCCAACCTGTGTGGGAAGGAGATCCGGCGG
ATGCTCTGGGACGAGGAGCACGAGAAGTGcacccccctccagccctgtGG
CTTGGACGGGATCGAGCACCCGCCGTTGACGGGGCAGTTTCTGGCCATGt
ccgtctttttctttgcgTTGGACTGCATGAAACAGCTGGGACCCTCCGAC
CTGCCGCACTGGCCCTCGCCCAGCATCGACGAGATTGAGAAGGCCGCAGC
CCGTTTCTGCGCGCAGTCTTGGAGCTCTCTGAACACGACCGCCACCAACC
ACGCCTTCACGCGCGACGATCTTCTGCCCTACCGATGTGCGGAGGTGGTG
TACATCCACACGTTGCTTAAGCACGGCTATGGCTTCCCCGGGGACTCGAG
GGACGTGACTTTCGTGCTCGACATTGAAGGGATGGAAGTGGAATGGACGT
TGGGGTTTGCGCTCTCCGAGGTCCCTCTGGACCAAGAAGAAGCCGAATTG
GGCACAGCAGCGACACCCGTGCACCACCATGTGTATCTGGATGAagcgga
caaggaggaagagcaggaacAAGCAGCGGTGGAGGCCAGAAGGCGACGAA
GGGTCGGCGATGGGAGAACCGGGGTAAAAAGTGTCAAGATGGACCTGCCG
GAGGAGCAGCCAGAATTGCGTGGGTGTGAAgacatggaagggaggggaca
aggggTGCAGGGAGAACCACCACGGTGGGAAAGCGGATGGCAAAGCCTCA
CGTTCAATCTCTCCGAGTTACACCGACTCGCGCGCGCGTGGCATCCACAA
GTGGGAGGGGGTCTGGTGTCAGGGACTTGGTCCTGGGTGGAAATAGGCGC
ATGCATGGTGTCCTCAGTAGGAATATGCTTAGCGATAGCATTAATTTTGG
TGTATGTGCGGGGGGACAGGGATTGGTCGCTTTGCTCCCCCAAATCGACG
CCGCCCGCGTCCCCGGTAGGGCGACGGACTAGGCAGGGATGCGTCAAGGA
AGTGTGGGAGCCGCATGAGAAGGACGCCAGAAAAGCAGAGTTGTCGCCCA
TGTGACAAACTTGCAGCAGTGACGATTTTTAGAGAGGGAGCGCGCATTTT
GCTGTGCAAAGCCAGAAAACAGTACGAGAGATGCGCTCAAAAATCTGAGA
AAAGATCGACAAAATTGCATAATGTCCCCACAAggacgaaggaagaaaac
gtTGTACAGTGGATATTACTCGCCTGTGCGTGGGCAATGACTGACGGTCT
GAGTGAAAGTGATGATGATTGTATAAGATGCAACCCCAAAGAAAAAGCTA
AAGGTTCGAAAGTTGCTAGACG

Coding sequence (CDS) from alignment at CM002455.1:1208746..1211717+

>rna482 ID=rna482|Name=rna482|organism=Nannochloropsis gaditana|type=CDS|length=2463bp|location=Sequence derived from alignment at CM002455.1:1208746..1211717+ (Nannochloropsis gaditana)
ATGTCGTGTTACACTGGCCCGGAGGTGGACTCGCCTTTGCAAGATGACCA
CAAGCCAAAGCGACAGCAGAGACGGACCAGGCCGGTGCCCCGTTTGCCTA
GCGCTAATCCCGTACATCAGCCTGTTACTGCCAGGCGCTCAGGGGGCATT
GGGCAGAACTCTATGACGACGTACATATGTAAATGGACATTGGCGTGGCC
GCTTCTCCTAGTGACGTGTTGTGCGATGTCAATATGCCTTCCCAGAGGGT
TGGCTGCCGCGGCGGTAggctcttcatcctcctcttcttcctccatcatc
tCTTTACACGTCCTCGACCGCATAAGAAATCAGTTAGGACTCGCCTGGGC
ACCGCCTCCAAACAATTACAATGCTCATCATCCGCAGCCATCGCAGCAAG
ACGCCATGCAACCGCAAGCGTTCGAAGGCAGTCCCGAGCAGATTCACCAC
CTTGAatggggggccgggggcgtcACTTCACAAGAATTGCCCGCTTCGCC
CGGCAATATCGGTATGCGAGAAGGAACGGGCAAGGGTGTAGAAGAATCGC
ACCAGTACGCCGTGGTGATTGACGgcgggagcacggggagccGGATGTTT
GTCTACCGTTTCTTCTACCCGGGGCGAGGGGCCAAACGAGAAATCGAGTG
CATTGCCAGCAAGAAGGTGACGCCGGGTCTTAGCGCTTTTGATGGGCGCC
CGGAGGAAGCCTCTGAATACATGCGGCCCCTTTTTGAGCATGCCGCGGGT
GTGATTCCCGGGGTCTACCAGAGCGAGACCCTAGTGTTCCTGCAGGCGAC
TGCGGGGATGCGCCTTCTCTCCGAGGCCTCGCAAGAGTCCATATACGATC
ACATATACATGGATTTAGCCCATCCGGAAGGGGAGAAATTGCCGTTTCCC
TTCCGCTTGTATCGACGGAACGTGGGCACCTTGTCCGGGAGATTGGAAGG
CTTTTACGCCGCCTTATCGGTGAACTACCTGACTGGCCGGATCGACACCC
ATTTGGAACGGGAGTCGGTCGGTGCgacggaaggcggggacgCAGAGGAC
ACAGGAGGGGGCAGTTTGGCACCGacggagggtgaggatgtGGGAGGGTC
CATTAGAGGCAGCAGTGCCTCCAGGGGAACCAGGCGTGGCCCGACCCAGA
CGTTGGTCGGGGCCTTGGACCTGGGGGGTTCCTCGACGCAGATCGTCTTC
CAGCACATGGAGGACACGGGAGGGGCGCTGGACGAGTCAGATTTCTGGGT
CCAGTCCTACTTGGCCTACGGCGTGGATACTATCCGGTATCGGCTGTGGT
CCTTCCTGACCCGCCACGTCGCCCCCATGGATCCGGCCCTCGTCGCAGGA
ACCGCCGTGGAGAACCCCTGCGCATTCGCGGGGCATGAGGAGTGGTTCAA
AGGCCACCGCTTGGTGGGCACGGGGCAGGCCAACCTGTGTGGGAAGGAGA
TCCGGCGGATGCTCTGGGACGAGGAGCACGAGAAGTGcacccccctccag
ccctgtGGCTTGGACGGGATCGAGCACCCGCCGTTGACGGGGCAGTTTCT
GGCCATGtccgtctttttctttgcgTTGGACTGCATGAAACAGCTGGGAC
CCTCCGACCTGCCGCACTGGCCCTCGCCCAGCATCGACGAGATTGAGAAG
GCCGCAGCCCGTTTCTGCGCGCAGTCTTGGAGCTCTCTGAACACGACCGC
CACCAACCACGCCTTCACGCGCGACGATCTTCTGCCCTACCGATGTGCGG
AGGTGGTGTACATCCACACGTTGCTTAAGCACGGCTATGGCTTCCCCGGG
GACTCGAGGGACGTGACTTTCGTGCTCGACATTGAAGGGATGGAAGTGGA
ATGGACGTTGGGGTTTGCGCTCTCCGAGGTCCCTCTGGACCAAGAAGAAG
CCGAATTGGGCACAGCAGCGACACCCGTGCACCACCATGTGTATCTGGAT
GAagcggacaaggaggaagagcaggaacAAGCAGCGGTGGAGGCCAGAAG
GCGACGAAGGGTCGGCGATGGGAGAACCGGGGTAAAAAGTGTCAAGATGG
ACCTGCCGGAGGAGCAGCCAGAATTGCGTGGGTGTGAAgacatggaaggg
aggggacaaggggTGCAGGGAGAACCACCACGGTGGGAAAGCGGATGGCA
AAGCCTCACGTTCAATCTCTCCGAGTTACACCGACTCGCGCGCGCGTGGC
ATCCACAAGTGGGAGGGGGTCTGGTGTCAGGGACTTGGTCCTGGGTGGAA
ATAGGCGCATGCATGGTGTCCTCAGTAGGAATATGCTTAGCGATAGCATT
AATTTTGGTGTATGTGCGGGGGGACAGGGATTGGTCGCTTTGCTCCCCCA
AATCGACGCCGCCCGCGTCCCCGGTAGGGCGACGGACTAGGCAGGGATGC
GTCAAGGAAGTGTGGGAGCCGCATGAGAAGGACGCCAGAAAAGCAGAGTT
GTCGCCCATGTGA

Synonyms

Publications