rna4818, rna4818 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4818
Unique Name	rna4818
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1276
Alignment location	CM002464.1:440433..443035 -

Link to JBrowse

Properties


Property Name	Value
Product	atpase family aaa domain-containing protein 3
Orig transcript id	gnl\|cribi\|Naga_100054g29.5554.mrna
Orig protein id	gnl\|cribi\|Naga_100054g29.5554
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:440433..443035 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100054g29	gene4654	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25862.1	cds4806	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4818	rna4818-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:440433..443035-
coding sequence from alignment at CM002464.1:440433..443035-

mRNA sequence

>rna4818 ID=rna4818|Name=rna4818|organism=Nannochloropsis gaditana|type=mRNA|length=1276bp
TCAGGATTGCACGGAAGATATGTCGATAAATAAGGATGGTACATCTCCTG
CCGTACCAGTGTACTCTTTTTTTACGAACTGTCTGGTACGTGATAGACCA
CTTGGTATTTGTGAGTGACTCGGCAGTAGAGTTTGGGTGTTCCTTCAAGC
TTATGATTGACTACTTTTTGATGATTCGTGAAAACAAAATGAGAAATATC
TTGGGGAAATTCAAGCTGAAAGGTCGCCTTGGAAATGGGAAAAAATTTTA
TGCACTTGAAGTATGTACTCATTACTATTGCTTCTCAGGCTGGCGGTGCA
GCGGGAACGGCCGTCGACATGTCATTATTCCCGCTCGACACAATTAAAAC
AAGGCTCCAAGCTTCGGAGGGATTCTGGAAGGCTGGAGGATTTCGTGGGG
TTTACAAAGGGCTTGGAGCAGCCGCAGCGGGATCAGCTCCAGGCGCTGCT
CTCTTCTTTTCCATTTATGAAACAATCAAAATTGAGGCAGAGCCGTTAGT
ATCTGATCGCCTCGCGCCACTGGTGCACATGGTGGCAGCCTCTGTGGGGG
AGACGGGTGCTTGTCTTATCCGGGTGCCGACCGAGAATGTGAAACAAAAT
TTGCAAGCAGGTAGATACAATACAAATGCGGAGGCGTTACGGACGATCTG
GAAGCAGGAGGGTGTGATGGGCTTCTACAAAGGCTTCCTTTCTACGGTTT
TTCGAGAGATCCCCTTTTCGTTCCTCCAATTTCCCATGTACGAGGCAGCC
AAAGCTTTCTGGGCGCAAGAGCAAGGGAGGCCCGTGTCGCCTCTCCAAGC
GGCGGCGTGTGGATCCGTAGCCGGGGCAGTCGCCGCCGCAGTCACTACCC
CTCTGGACGTGATTAAGACGCGCCTCATTTTAGAAAAGGACATGCAGGGT
CGGAAATATCACGGCATCGTCGACGTGTTCCGACGCGTGGTCGCGGAGGA
GGGGCCCATGACGCTCTTCGCCGGGGTCGCCCCAAGGGTGATGTGGATCA
CGATTGGCGGTTTCGTTTATTTTGGAGCCTACGAGGAGGTGCGGCGCTTG
CTTTCTCCTGTCTTCCCTCCTCCTCATCCGCATTTTCCCGATGCCTCAGC
CTCTGGAAAAGTAGGAATCTTGTAAACTAGTGGGTGCGGCGCCGGCTTTC
AATCTGGACGCCCGTAGAGGAACATGACAGCAAAGCAAACTCATAGCATG
CTTGTACCCCTCGTCCGGACTTATCCTTAGGGATGCTTATTTTCGTTCTT
ATTTGGTCCCAAACGCCCCCGACACG

protein sequence of rna4818

>rna4818-protein ID=rna4818-protein|Name=rna4818|organism=Nannochloropsis gaditana|type=polypeptide|length=558bp
MYFLPSLYPMRSAAKAAKELDKSTNAREALKLIELQEVSKQREAEARRTE
YEAHVKSLEIQRAQKEGEEARKTLDSQTEHEKRRAEYRDQLERKRYVDQL
NAEKYRKEEELRKQEEYLAKQEAIKRKTLEYEAELRQQTELARVKAETEG
RIKQERQNHDLRVAQARAEAKEYRETVLEGIKLASTELGKGLQEFLTDKE
RLTSAAVTLSAVALGVYAAKTSTGVAGRYIEARLGKPSLVRDTSRRTALQ
VLRNPVPSLRRLLTTTKAEDALKGVVLEKGLTERLTRVAISTANTKANGA
PFRNLLLHGPPGTGKTLFAKGLAANSGLDYAILTGGDVAPLGKEAVTEIH
KVFDWAGTTRKGVLLFVDEADAFLRRRSTEHMSEELRNALNAFLYRTGEA
SDKFMVVFASNQPEQFDWAINDRIDEMVDFNLPGEEERLEMVTIYLEKYV
LNPPSTKARPITVEGIGEEEVKYAAKVTVGFSGREISKLAIAWQAAAYGA
REGTATLDKELFLRVLEQHLASKRKKKDWFEASLPGGPEVEGKAWEALVT
DGEGPSSK

mRNA from alignment at CM002464.1:440433..443035-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4818 ID=rna4818|Name=rna4818|organism=Nannochloropsis gaditana|type=mRNA|length=2603bp|location=Sequence derived from alignment at CM002464.1:440433..443035- (Nannochloropsis gaditana)
GGACGCCATAAAGAAGTTTCGCATCCCTTAGTGTGTACAACACAGTACTT
TATTGCTAGATGTGCTAATGGGAAGTTTTAATTGGTATCACGGCTGAAGT
ATCTCGGCATAGCATGCAGGAAGGTAGTCCATAGTAATTCATACGTTATC
TAGCTACAAGAGCCTTTTTTGGAGCGCGCAAAAGCTCGTTCTACAGGTTG
AAAGCGCAACACACGAAGAAAATAATGCAGACGAGCGCTTGATTTGATAA
GTAATGGGCTTGAATCGTGGAAGAGCGCGACTGTCCGCAGGAACGCATTC
TCATTGTGCCCCTACGCACCGAACTCCGCAACGACGACACCCACAGGCTT
ATGTTCAGCGGAATTTTCCCCAAAAAGCCGGATACGGCGGGGGAAAAAGC
GCTGGCGCAGGCCTTGGGGGGAGCGGAGGATGATGAGGGAGACAGCAGTA
GCTCTCGAGGCAACAAAGGCGGGGGAAAAGGCTCGGGCCTCTTCGACCCG
TCAGGACTCGAACGGTAGGGGGGTATGGTGGAGAAATTGTATTCTATTCC
AGATGGTGGAAACGATTGTCTAAACTCTGCCCCAATCTTTATTTTCACGC
CATACTCATATGGTATTCGTGTGATATGTATTTTCTTCCATCACTCTACC
CGATGCGCAGCGCTGCCAAAGCCGCCAAGGAGCTCGACAAGTCCACAAAT
GCTCGCGAGGCCCTAAAATTGATCGAGCTACAAGAAGTTAGCAAACAACG
GGAGGCGGAGGCGAGACGTACAGAGTATGAGGCACACGTGAAGAGTTTGG
AGATCCAGCGTGCCCAGAAGGAAGGAGAAGAAGCCCGCAAGACCTTGGAC
TCGCAGACAGAGCACGAAAAGCGGAGGGCCGAGTACAGGGACCAGCTGGA
GCGTAAGCGGTACGTGGATCAGCTGAACGCAGAGAAGTATCGGAAAGAAG
AAGAGCTTCGGAAGCAGGAAGAGTACCTTGCCAAGCAGGAGGCTATCAAG
CGCAAGACGCTCGAGTACGAGGCGGAGCTCCGGCAGCAGACGGAACTGGC
GCGGGTGAAAGCCGAGACAGAGGGACGGATCAAGCAGGAGCGGCAGAACC
ACGACTTACGGGTGGCACAGGCGCGGGCCGAGGCGAAAGAGTACCGAGAA
ACCGTCCTGGAAGGGATCAAACTCGCGAGCACCGAGTTGGGGAAGGGCCT
GCAGGAGTTCCTGACCGACAAAGAGCGCTTGACCTCCGCGGCGGTGACGC
TCTCGGCTGTAGCTCTGGGGGTCTACGCGGCCAAGACATCGACTGGGGTG
GCAGGGCGCTACATCGAGGCGCGGCTGGGTAAGCCCTCCCTGGTCCGGGA
CACCTCTCGCCGCACCGCCCTCCAGGTGCTGCGGAATCCTGTACCCTCCC
TCCGCCGGCTCCTCACCACCACCAAGGCAGAGGACGCGCTCAAAGGGGTG
GTGCTGGAGAAGGGCCTGACGGAGCGGCTGACGCGCGTGGCCATCTCCAC
GGCCAATACCAAGGCGAACGGGGCTCCCTTCCGGAACTTGCTCCTGCACG
GCCCCCCGGGGACAGGCAAGACCCTCTTTGCCAAGGGCTTGGCCGCCAAC
TCCGGTCTGGACTATGCGATCCTGACAGGCGGAGACGTTGCGCCCTTGGG
CAAGGAGGCAGTGACGGAGATCCACAAGGTCTTCGACTGGGCGGGCACCA
CACGGAAGGGCGTGCTCCTCTTTGTGGACGAAGCAGACGCCTTTTTGCGC
CGACGCAGCACGGAGCATATGTCTGAGGAGCTCAGGAATGCCTTGAATGC
CTTCCTGTACCGGACAGGGGAAGCCAGCGACAAGTTCATGGTAGTCTTCG
CCTCGAACCAGCCCGAGCAGTTCGACTGGGCTATCAACGACCGCATCGAC
GAGATGGTCGACTTCAATCTCCCGGGGGAGGAAGAGCGGCTGGAGATGGT
CACCATCTACCTGGAAAAATACGTCCTCAACCCACCATCGACCAAGGCGC
GGCCCATAACGGTGGAGGGGATCGGAGAGGAGGAGGTGAAATACGCAGCG
AAGGTCACTGTTGGGTTCTCGGGCCGAGAGATCTCAAAGTTGGCGATAGC
GTGGCAGGCAGCAGCATATGGAGCGAGAGAAGGAACAGCAACTTTGGACA
AGGAACTGTTCCTGCGGGTGCTGGAGCAACACCTGGCGTCCAAGAGGAAA
AAGAAAGACTGGTTCGAGGCGTCCCTGCCGGGGGGTCCCGAAGTTGAGGG
GAAGGCGTGGGAGGCTCTGGTCACGGACGGGGAGGGGCCATCTTCAAAGT
AGTAGGGAAGGAGGAGAGTGGGAAGTTTGCTGTGCGTAATTTGTGGGATG
AGAGCCCGAAGTCCCAGAGAAAAGGTGTTTTGGCGGAGGGAGCCTGCAGA
AGCAGGATCCAAGGGCGCAGGGGAGGGGATGGCAAAGATTCTGAAGTCGT
TAGGTTTGACCTGAAGTTATGCCTTGGACGGAAAGGCTTCGCACGCCATA
GTGGCCAACTTGTAAGCGGTAATATCGCGTGTCGGGGGCGTTTGGGACCA
AATAAGAACGAAAATAAGCATCCCTAAGGATAAGTCCGGACGAGGGGTAC
AAG

Coding sequence (CDS) from alignment at CM002464.1:440433..443035-

>rna4818 ID=rna4818|Name=rna4818|organism=Nannochloropsis gaditana|type=CDS|length=1677bp|location=Sequence derived from alignment at CM002464.1:440433..443035- (Nannochloropsis gaditana)
ATGTATTTTCTTCCATCACTCTACCCGATGCGCAGCGCTGCCAAAGCCGC
CAAGGAGCTCGACAAGTCCACAAATGCTCGCGAGGCCCTAAAATTGATCG
AGCTACAAGAAGTTAGCAAACAACGGGAGGCGGAGGCGAGACGTACAGAG
TATGAGGCACACGTGAAGAGTTTGGAGATCCAGCGTGCCCAGAAGGAAGG
AGAAGAAGCCCGCAAGACCTTGGACTCGCAGACAGAGCACGAAAAGCGGA
GGGCCGAGTACAGGGACCAGCTGGAGCGTAAGCGGTACGTGGATCAGCTG
AACGCAGAGAAGTATCGGAAAGAAGAAGAGCTTCGGAAGCAGGAAGAGTA
CCTTGCCAAGCAGGAGGCTATCAAGCGCAAGACGCTCGAGTACGAGGCGG
AGCTCCGGCAGCAGACGGAACTGGCGCGGGTGAAAGCCGAGACAGAGGGA
CGGATCAAGCAGGAGCGGCAGAACCACGACTTACGGGTGGCACAGGCGCG
GGCCGAGGCGAAAGAGTACCGAGAAACCGTCCTGGAAGGGATCAAACTCG
CGAGCACCGAGTTGGGGAAGGGCCTGCAGGAGTTCCTGACCGACAAAGAG
CGCTTGACCTCCGCGGCGGTGACGCTCTCGGCTGTAGCTCTGGGGGTCTA
CGCGGCCAAGACATCGACTGGGGTGGCAGGGCGCTACATCGAGGCGCGGC
TGGGTAAGCCCTCCCTGGTCCGGGACACCTCTCGCCGCACCGCCCTCCAG
GTGCTGCGGAATCCTGTACCCTCCCTCCGCCGGCTCCTCACCACCACCAA
GGCAGAGGACGCGCTCAAAGGGGTGGTGCTGGAGAAGGGCCTGACGGAGC
GGCTGACGCGCGTGGCCATCTCCACGGCCAATACCAAGGCGAACGGGGCT
CCCTTCCGGAACTTGCTCCTGCACGGCCCCCCGGGGACAGGCAAGACCCT
CTTTGCCAAGGGCTTGGCCGCCAACTCCGGTCTGGACTATGCGATCCTGA
CAGGCGGAGACGTTGCGCCCTTGGGCAAGGAGGCAGTGACGGAGATCCAC
AAGGTCTTCGACTGGGCGGGCACCACACGGAAGGGCGTGCTCCTCTTTGT
GGACGAAGCAGACGCCTTTTTGCGCCGACGCAGCACGGAGCATATGTCTG
AGGAGCTCAGGAATGCCTTGAATGCCTTCCTGTACCGGACAGGGGAAGCC
AGCGACAAGTTCATGGTAGTCTTCGCCTCGAACCAGCCCGAGCAGTTCGA
CTGGGCTATCAACGACCGCATCGACGAGATGGTCGACTTCAATCTCCCGG
GGGAGGAAGAGCGGCTGGAGATGGTCACCATCTACCTGGAAAAATACGTC
CTCAACCCACCATCGACCAAGGCGCGGCCCATAACGGTGGAGGGGATCGG
AGAGGAGGAGGTGAAATACGCAGCGAAGGTCACTGTTGGGTTCTCGGGCC
GAGAGATCTCAAAGTTGGCGATAGCGTGGCAGGCAGCAGCATATGGAGCG
AGAGAAGGAACAGCAACTTTGGACAAGGAACTGTTCCTGCGGGTGCTGGA
GCAACACCTGGCGTCCAAGAGGAAAAAGAAAGACTGGTTCGAGGCGTCCC
TGCCGGGGGGTCCCGAAGTTGAGGGGAAGGCGTGGGAGGCTCTGGTCACG
GACGGGGAGGGGCCATCTTCAAAGTAG

Synonyms

Publications