rna481, rna481 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna481
Unique Name	rna481
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1313
Alignment location	CM002455.1:1206092..1208426 -

Link to JBrowse

Properties


Property Name	Value
Product	prolyl 4- alpha subunit domain protein
Orig transcript id	gnl\|cribi\|Naga_100090g13.8838.mrna
Orig protein id	gnl\|cribi\|Naga_100090g13.8838
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:1206092..1208426 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100090g13	gene464	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30189.1	cds481	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna481	rna481-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:1206092..1208426-
coding sequence from alignment at CM002455.1:1206092..1208426-

mRNA sequence

>rna481 ID=rna481|Name=rna481|organism=Nannochloropsis gaditana|type=mRNA|length=1313bp
TTCGAGGGCAATCCGAGCGACCGGCACATCTCAAGTGGAACCAGGCTGCT
GTGCTGTACCCACTGAGAAGCAAAGCATGTCTCCCTTCCTCCGTCCTTTC
CTCCAACGCTAGAATTCTGCCTTCACACATTGCGCTCGTATTCACTTGAT
TTTTCGGTCTTCACGCGCCGGACAACAGGTTGGCAACCAAAAAGGGCGCA
ACAAAATACAGCTTTCTCAGGTCGGGCTTCCTTCAGGCCATCTTCAGCGC
AGTACCCGTCCCCCGCATGGCAGAAACGGAGGACCTTGATGACATCCTCA
ACGATGCTCTCGACGAACTGGATCAAGAAGAGGAAGAGGAAATCCATTCA
GCCGCCCATTCAACGTCACAAGCTCCCAACTCGAGTGTGAAGAGCAAGGC
TGCCGTCCCTGTTGAAGCTACAGGTGCAGGAACAAGCACCCCGAAGTCTA
CCTCTACGGTCGCATCATCAGCGTCTACTGGTATAGGGACGGATGAAGAT
GAAGAGAAGGACCTGAAAGAAACCATAGCTAGGACCATCGAAATGTTGGG
CAAAATGGGAGGAGGCGAGGGAGGGAAAGAGGGAGAAGGGAAAGAGGACA
CGTTCGACGACGCGTTCTTGAGCAAACTGGTGGCAGAATTCGATAAACTT
GGGGCAGGTTTTGAAAGCGGGGCGGGAGAAGGAGACGGAGAAAAAGGAGG
GGGAAAAGAAGGCGCCACGGACACAATGGTCGACTCGATGGTGAGACAAT
TGCTAACAAAAGACTTGATGTACCCTCCCTTAAAGGAGGTAACGAGACAG
TTCCCTGCATGGCTGGAGTCAAACAAGGGCAAAGTGGAGGACGGTGTGTA
CGAGAAGCACCGGGCGCAGTACGAGTTGTTTGAGAAAATAGTGGCAGTCT
ACGAGGGTCAGGATGGCGGCGACGAGGGGGAGGGAAGGGACATGGGCGTT
TTGTTAGACCTGATGACGCAGGCGCAGGACTTTGGTCAACCACCCGCTGA
GATCGTGCAGGCCCTGGGGGGAGGATCAGGGGGAGGGTCGTTTACAGACC
CGGCGGGGGGGATGGCAGGCCTTCTGCACGCCGCCTTGGCGAGCGAGGGG
GGAGGGGACACGGAGGGGTGTTGTGTCATGTAGCTTATGTCGATACGGAG
GGGAAAGCGGGGGGTATGAGAGAGAGAAAGGAAAAGAAAGAGATGGATTG
CTGGAGATGAACTCCATCTGCTACGCTTAAAATGTGGGTGCCTTAACTTC
CTGGTGGGAGGGAGGGCATCCGTTCTCTTCCGCTCTTCCTTGTCTCTAGC
GAGCTCCTCTCCC

protein sequence of rna481

>rna481-protein ID=rna481-protein|Name=rna481|organism=Nannochloropsis gaditana|type=polypeptide|length=603bp
MRLTLASLAAGIAGAVFSIGSIVNLVAAEAAEMELLNQASVDLDVYWRDE
NSGGTYTRISTIPKGTSGVIQTFQGHGFLLTGKGHVVGPLDRPNFLQQMK
RHRVRASDSSQEELIFEDLDLGGEIDAPKDGRGKQHNESTGASTSSDVTA
PPLEANVQLQISNQAGGAIYIYWLHPERGSFILLNTMSQGQSFKLNSFVG
HRLLISQVPDNHLDHSKAPNIIVHHDSGAFDVVSSNDITADVIVKKHEES
ASRKTVAAFPIEQPPPLVKPPATYHKSVTGQQVKEALKQCGGEASCIVDA
LYRGKLARIQRSIQKSMTERDELQEPYRDYACLHHETMGPEDMKVTYWTY
PEDKFGATDSPSPVSGATPNNKTVRVDHYFDSEWGNARIYLLHDIISPSE
CAALKNRSSGRLIHASVSGELPGQRIISSVRKAKSASISPDLKDPTDILA
TLQRRVFAFANEHGCGGYESFDLAGQESLNAIVYDASGDEYRMHCDGYCD
SSKFVRGGRAATMVLYCEEGARGGQTSFTNADIMLKGKAGQAAFFHYRGP
DDYMDVGYTKHSGCPLVEGNKRITTQWIRRGVTAASPYYLYTPTGDRDTG
GAQ

mRNA from alignment at CM002455.1:1206092..1208426-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna481 ID=rna481|Name=rna481|organism=Nannochloropsis gaditana|type=mRNA|length=2335bp|location=Sequence derived from alignment at CM002455.1:1206092..1208426- (Nannochloropsis gaditana)
GGCGCATGTTCGTATGCAGAAAAGCGTGTCTGCCCCGTTATTCCCCTAGA
AATCAGGTCAATTCAAAAATCAATGTGCATTAATCCTTGGTTCGGACATA
CTTCGAGAGGAATCGAGTCAGAAGTCCACTTTAAAATGGTTATATGGCGA
TCGCTCGGATGCTGATTTGGGCCCATCGTACCTCTGGAATTCTGTGTAAT
TCTGTGCTCGCCGGTTCGTCTACTCACGTTCACGTACTCACGCAAAGCCA
CCGAACATAACAAAGCCATAGGATGAGGCTCACTCTGGCCTCACTGGCCG
CTGGTATTGCAGGAGCGGTTTTTTCGATTGGCTCAATCGTTAACCTGGTC
GCCGCGGAAGCTGCTGAGATGGAGCTGCTGAATCAAGCCTCTGTCGATTT
GGACGTGTACTGGCGAGACGAGAATAGCGGCGGCACGTACACCCGAATCT
CCACAATCCCGAAGGGAACAAGTGGAGTTATTCAAACGTTTCAAGGTCAC
GGCTTTTTGCTGACTGGAAAGGGGCATGTGGTTGGCCCGTTGGACCGTCC
TAACTTCCTGCAGCAAATGAAGAGGCATCGTGTCCGTGCTTCGGACTCAT
CCCAAGAAGAGCTCATTTTCGAAGATTTAGATTTGGGCGGCGAAATCGAT
GCGCCGAAGGATGGGAGAGGAAAGCAACACAACGAGTCCACAGGTGCATC
CACATCCTCTGATGTCACCGCCCCGCCCCTCGAAGCGAATGTCCAACTAC
AGATCAGTAATCAAGCGGGTGGAGCTATATATATTTACTGGTTGCACCCA
GAGAGGGGTAGTTTTATTTTACTGAATACCATGTCTCAGGGGCAGAGCTT
CAAGCTGAACTCATTCGTCGGCCATCGCTTGTTAATCTCCCAAGTTCCTG
ATAATCACTTGGATCACAGCAAGGCGCCCAATATCATTGTGCATCATGAT
TCCGGAGCCTTTGATGTAGTTTCATCAAACGATATAACGGCAGACGTTAT
TGTCAAGAAGCATGAAGAGTCAGCCTCGAGGAAGACGGTTGCGGCCTTCC
CGATAGAGCAACCTCCTCCCCTTGTCAAGCCCCCTGCAACTTACCATAAA
AGTGTCACCGGACAGCAGGTGAAGGAAGCCCTAAAACAATGTGGAGGCGA
AGCATCATGTATCGTGGACGCCCTTTACCGTGGCAAACTTGCTCGAATTC
AGCGAAGTATTCAAAAGAGCATGACAGAGCGAGACGAGCTGCAAGAGCCT
TATCGAGACTATGCCTGCCTACATCACGAAACCATGGGACCTGAGGATAT
GAAGGTGACGTATTGGACATATCCGGAAGACAAATTTGGGGCGACTGATT
CACCTTCCCCGGTTTCCGGGGCCACTCCAAACAATAAAACCGTCCGCGTC
GACCACTATTTCGACAGCGAGTGGGGGAACGCACGCATTTACCTTTTGCA
CGACATCATCAGTCCTTCAGAATGTGCGGCTTTGAAAAACCGGAGCAGTG
GTCGCTTGATTCATGCCTCGGTCTCAGGTGAGCTCCCGGGGCAAAGAATT
ATCTCGTCTGTACGCAAGGCCAAGTCGGCGAGCATCTCTCCGGACTTGAA
GGACCCGACAGATATCCTGGCAACATTGCAACGTCGTGTTTTCGCTTTTG
CAAATGAGCACGGTTGTGGGGGTTACGAGAGTTTTGATTTGGCAGGTCAG
GAGTCTTTGAACGCGATAGTGTACGACGCCTCTGGTGATGAGTATCGCAT
GCATTGTGATGGATACTGTGATTCCAGCAAGTTTGTAAGAGGGGGACGGG
CAGCCACAATGGTGCTTTACTGCGAGGAAGGCGCACGAGGGGGACAGACT
AGCTTTACCAACGCTGATATCATGCTCAAGGGAAAGGCTGGTCAGGCTGC
TTTTTTTCACTATCGAGGTCCCGATGATTACATGGACGTTGGGTACACCA
AGCATAGTGGCTGTCCGCTAGTGGAAGGCAACAAACGCATTACAACACAA
TGGATCCGACGCGGTGTAACTGCTGCGTCTCCTTACTATTTATATACACC
AACGGGGGATAGGGACACAGGAGGAGCACAGTAGGCTAGGAAGTCGTCGA
AATCACCTTCAAAATATATTCTTCCACAGAGAAAGTACTTGTAAATCGCT
TTTAAAAAGAGTGAGAGCTTCACTCGTTGGAGTTCCTGGCATAAATGGTC
GGATTTTTGTTTTAGTATCTGCCGTTGCGCTATTCGTTTGGTCAATTTCA
CGCCTACTTTGAAATTAGTATTGGCATGCATACGATCAAATGCGAGCCAA
GCACATCGTTGAGGATGAACTCCGCACCGCATCAT

Coding sequence (CDS) from alignment at CM002455.1:1206092..1208426-

>rna481 ID=rna481|Name=rna481|organism=Nannochloropsis gaditana|type=CDS|length=1812bp|location=Sequence derived from alignment at CM002455.1:1206092..1208426- (Nannochloropsis gaditana)
ATGAGGCTCACTCTGGCCTCACTGGCCGCTGGTATTGCAGGAGCGGTTTT
TTCGATTGGCTCAATCGTTAACCTGGTCGCCGCGGAAGCTGCTGAGATGG
AGCTGCTGAATCAAGCCTCTGTCGATTTGGACGTGTACTGGCGAGACGAG
AATAGCGGCGGCACGTACACCCGAATCTCCACAATCCCGAAGGGAACAAG
TGGAGTTATTCAAACGTTTCAAGGTCACGGCTTTTTGCTGACTGGAAAGG
GGCATGTGGTTGGCCCGTTGGACCGTCCTAACTTCCTGCAGCAAATGAAG
AGGCATCGTGTCCGTGCTTCGGACTCATCCCAAGAAGAGCTCATTTTCGA
AGATTTAGATTTGGGCGGCGAAATCGATGCGCCGAAGGATGGGAGAGGAA
AGCAACACAACGAGTCCACAGGTGCATCCACATCCTCTGATGTCACCGCC
CCGCCCCTCGAAGCGAATGTCCAACTACAGATCAGTAATCAAGCGGGTGG
AGCTATATATATTTACTGGTTGCACCCAGAGAGGGGTAGTTTTATTTTAC
TGAATACCATGTCTCAGGGGCAGAGCTTCAAGCTGAACTCATTCGTCGGC
CATCGCTTGTTAATCTCCCAAGTTCCTGATAATCACTTGGATCACAGCAA
GGCGCCCAATATCATTGTGCATCATGATTCCGGAGCCTTTGATGTAGTTT
CATCAAACGATATAACGGCAGACGTTATTGTCAAGAAGCATGAAGAGTCA
GCCTCGAGGAAGACGGTTGCGGCCTTCCCGATAGAGCAACCTCCTCCCCT
TGTCAAGCCCCCTGCAACTTACCATAAAAGTGTCACCGGACAGCAGGTGA
AGGAAGCCCTAAAACAATGTGGAGGCGAAGCATCATGTATCGTGGACGCC
CTTTACCGTGGCAAACTTGCTCGAATTCAGCGAAGTATTCAAAAGAGCAT
GACAGAGCGAGACGAGCTGCAAGAGCCTTATCGAGACTATGCCTGCCTAC
ATCACGAAACCATGGGACCTGAGGATATGAAGGTGACGTATTGGACATAT
CCGGAAGACAAATTTGGGGCGACTGATTCACCTTCCCCGGTTTCCGGGGC
CACTCCAAACAATAAAACCGTCCGCGTCGACCACTATTTCGACAGCGAGT
GGGGGAACGCACGCATTTACCTTTTGCACGACATCATCAGTCCTTCAGAA
TGTGCGGCTTTGAAAAACCGGAGCAGTGGTCGCTTGATTCATGCCTCGGT
CTCAGGTGAGCTCCCGGGGCAAAGAATTATCTCGTCTGTACGCAAGGCCA
AGTCGGCGAGCATCTCTCCGGACTTGAAGGACCCGACAGATATCCTGGCA
ACATTGCAACGTCGTGTTTTCGCTTTTGCAAATGAGCACGGTTGTGGGGG
TTACGAGAGTTTTGATTTGGCAGGTCAGGAGTCTTTGAACGCGATAGTGT
ACGACGCCTCTGGTGATGAGTATCGCATGCATTGTGATGGATACTGTGAT
TCCAGCAAGTTTGTAAGAGGGGGACGGGCAGCCACAATGGTGCTTTACTG
CGAGGAAGGCGCACGAGGGGGACAGACTAGCTTTACCAACGCTGATATCA
TGCTCAAGGGAAAGGCTGGTCAGGCTGCTTTTTTTCACTATCGAGGTCCC
GATGATTACATGGACGTTGGGTACACCAAGCATAGTGGCTGTCCGCTAGT
GGAAGGCAACAAACGCATTACAACACAATGGATCCGACGCGGTGTAACTG
CTGCGTCTCCTTACTATTTATATACACCAACGGGGGATAGGGACACAGGA
GGAGCACAGTAG

Synonyms

Publications