rna4797, rna4797 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4797
Unique Name	rna4797
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2714
Alignment location	CM002464.1:383338..386323 +

Link to JBrowse

Properties


Property Name	Value
Product	clathrin-adaptor gamma chain
Orig transcript id	gnl\|cribi\|Naga_100054g3.5560.mrna
Orig protein id	gnl\|cribi\|Naga_100054g3.5560
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:383338..386323 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100054g3	gene4633	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4797	rna4797-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25868.1	cds4785	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:383338..386323+
coding sequence from alignment at CM002464.1:383338..386323+

mRNA sequence

>rna4797 ID=rna4797|Name=rna4797|organism=Nannochloropsis gaditana|type=mRNA|length=2714bp
ACCTGCGGTTTGAAAGAAAGCTAGGATTCAGGGCGTCGGCTGCGAAATTG
GCCTTTTTTGTTTTATTTCGCTTTTATCGTAAAGTTGAAGGGTCCTTACT
GAGGACTCCTCAACCTGTCCATATATCATTTCCCATCGCAACTCGCCGCA
GGCATGCCAAAACCACCAATACCGTCGCAATCAAACCGACGACAATGGGG
GAGCATGGAGTTCACCATGGTGATTCTAGCAGGTCTCGGAGCGACCATTT
TTTGGGGGCATTGGCAGAAAGGTGCAATCCTCAATCCGCCTTATTGTGCA
TGGAGATTTGTAAGGTAATTATATCTCCTTATGCCCAATATCCGCCTTCG
CGTCAACGCTTGGAATGAAAGCTTTTTTATTGTATCACACGCGAAAGCTA
CTGAGCACCACAGTCTTATATTATGGTTATTACTACTGCATCATTACTGA
GTCTTGGTACCTAAGTCATTTTATTGTCATGATAATTGTGTAATTTGTCT
TTTACATTGCGGACCTACACACAACACCCACCCACACGCATATATACTTT
CACGAAGCAATTTCGCGTCCTGGAACGTCGCCTTTCCGGACTCCACCTCC
ATCTATCACGTCTCTCTGATGTACATCAGACGAGGAGAGGAGATCAAGAT
TTCCTCGTCCTCCCTTCCGTATGCCCGGTATTTCTCCTTTCAATCCTATT
CCATCCCGGATTTTGTCTCCTCGGCTAGCCTCCGGGACGTGGATATCATT
CCCTCCGGGAACGGGCCCAACTGCTACACAAATTTGACGGCGGCCATGGC
GGGGGCGAAGCAAGGAGGGTATGAGGTGGTGGTCACGTCCCACGGGGACC
ATGGCCATGCGAACGAATTGCGGGCCCTGGCGGACGACCGAGCCTCCGGG
TATTTTATTCTATTCTTCCGTATCTACCAGGACCGCGTGGGCAGCCTCCC
GCCCATGTCGGAACTCGCGGATGACATGGGGGAGTGCTTTGGTCCGCGCG
GCCGGTATCCGACAGAGACACCGCAAGAGTGGGGCTGGGCATGCCCGCCC
TCGGTGGCCGTGAAGCGCCTGTCCAGGAGAGTTGGCGGCGGGAAATTTGA
GACCTTGCCCCTTTGTGGGTACCGCCGCAAGCATGGGATCGTCTACAACG
ACGTGACTCCGCCCGTGATTGCATGTCCGTCCGTCCGCGCCCCCAACTTG
CCCTTCAATTTCTTCCTGCCGTCGCCTGATTACATCAAGCAGAAATTCGC
GAACAAGGATGCCAAGTACCTTTTCTCCTGTGCCGAGGCGCCATGGGTGC
CTGAGAAGAGCAAGGGGGCCGGAGGGTGGAGTTTCTGGAAGGGACAAAGA
AGCCCGGTGGAGGAGGGCCGAGAAAGGGAAGAGAATAGGGAAGGAGCGAC
AAAAAAAGAGACCCATAGGAAGCCTGTTGCCAGGGACAAGCCGTCGGAAG
ATGGCGAGGTGGAGGGAGAGGGGCGGAAAAGGGCCCCGGAGGCGGGACGT
GGGAGCGGAGAGGGTCGCGAGCTTTGGGCGCGTGTGACAGGGCGCCTGCC
TCGGACCGCCAACAGTTTGTACGAGCCTCCCTTCATCGCCAATTTCAGCG
ACTATGACGTACGCTACGTCTCGTTGTCCTCGGTTGGTCGGAGTCTGCCC
TATCGGGGTTATCAGACCCTGCACGATGCGGACATCACCGAGCATTATCT
CCGAGAGTTCGGTCCAGCATGGCTGGAAGACCGTTCCTTCAAGCTCTGGT
TAGGGCCTCCTCAGTATTCCTTGGCTGCCAGGAGTCACTTGCCAGGAATA
GTGCGGGAGGAGAAAGGCTTGTTCCTGCCCTGGGGCCGGGACTTCCGCGG
TGAGCACATCCCCTTCCCCGGGATTTTGTACCGGCAAATTCTCTCGCAGG
GGCAGGTGGTCGGGCCCTCGACGGCAGCGGGAAACGCGGGCCCAGGGAAT
GGGAGCGGCTGTGCGTGGACGGGAGAGAGGAAGGAGGGGCATAGGGGTCC
ACCTGCCAAATCATTGACGGGCGTGGGCGCAGCTTCGGCGACGGGATCCG
GAGCACCGATCGCAGGGCTGGCTGAAATCATCCCGCCGACATGCGAGAAG
CAAGAAGGAGAAGGCACGGAGCCCTTGCACGTGCTAAGCAACTATCTGTG
CTGCGGCCCCGCCGCCCCAGAATGGTGCCACGACCCTCGATTTGTCGCGA
GCAAGATGAGAGACTTTTACCCCCTTGTCGAGTACTATCTGAGGCGGCCA
CCGCGAGACACTCGGGATGGGCTCGAAGCAGGCGGAAGGGATGAGAACGG
AGAAGCCTTGGAAATTGTGGATGAAGAGGACGAAGTGGAGATGGAGAGGA
TAGGCGGGGGCTCCGAGGGCGCTCGGAAGATGACCTTGTACGACGGGCAG
GAGTTGGGGGTGCTCCCGCCATGCATGACGCGCGGGAAATGTCCGCACGC
AAGCGGAGAAGGGGCCAAGGACTCGTCCCAGTCGGGGGTGGATGCGGTGA
ACTCGCTCTTCAGTATTGTGGGGGAGATGTGGACCGAGATGTCGCCTTGA
GACGGGATGTAAGCGCTTGCGGGTGGGGACGGGCAGGAAAATGAGCGCGG
AGGGATGAAAGGAGTTGAGTGCGACTCTTAAATGTGAATAATGCATAATC
TCGCAGAAGCTAATGCAGTGCCTGCTCCACTTAGGCCGAAAGTACAACAA
CGTAAGGATATCTC

protein sequence of rna4797

>rna4797-protein ID=rna4797-protein|Name=rna4797|organism=Nannochloropsis gaditana|type=polypeptide|length=879bp
MTMRLRELIRAVRACKTAAEERAVIAKESALIRTAIKEEHEQYRHRNVAK
LLFIHMLGYPSHFGQMECLKLIASPHFFEKRIGYLGLSLLLTEQEEVLTL
VTNSIKNDLNSPNPFVVGLALSAVGNLATEDIARDLAMDVDKHLKSNNSY
LRKKAALATIRIFQKVPDLVEDFIERITSLLKDRSHGVLIAAVELMTEVM
KMDPAFTSAFSRLVPSVLRLLRNLLTMGYAPDHDIAGITDPFLQVKLLYM
LQCLGRDNAEASEAMNDLLAQVATNTETAKNAGNAILYQCVQTIMSVESE
AGLRVLGINILGRFLLNRDNNIRYVALNTLSKVVGRDAASVQRHRNTIVE
CLKDPDVSIRQRALELICQLVNPQNVQELTREMLNYLVVALPEHKASLCS
KIMHVVETYAPSPLWRLDTLITMLAIAGDACDPSIPHALVYYLSTAEDLQ
RYAVHKLFLLLTDDASQLGLVLAAVWAIGEFGDLLLQAQPALDEDTSAME
PQTPAAVLDALEEVVTNHGATQVTRGYVLVALLKLSDRFAAASPSVSDAE
MRRLAGLLSRYDTSLQLELQQRSCEFRQVLAPGVEGVRPEIVGRIPPLDE
AMLTARRGRFPGREDGGGKRGVSMEGSLFGEEGTGKKGGKEGPAASGGAT
DLLDLEEIFGGAPGPGNGGNGMTGAVTGGASLKGGESADLLSDIFASNVP
VAMPASAPVALSTPFDQVVVAEEGHLPHAPPPSFSSSSSLPPPTPSAPLP
PALPQQTTASITAFDQDGLRITMELSKPSPADDPSASLLLCRFDNRTDVT
LTNLSFQCAVPRYVKLELSPASGSTLLPNTAGSVTQAVRVANSLLGQKPL
QLKIKVQYTDGRGQPITKMGTVANFPAGY

mRNA from alignment at CM002464.1:383338..386323+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4797 ID=rna4797|Name=rna4797|organism=Nannochloropsis gaditana|type=mRNA|length=2986bp|location=Sequence derived from alignment at CM002464.1:383338..386323+ (Nannochloropsis gaditana)
AAGTGATGGTCCCATCTCCCatttccgctccctcctgttCTCATTCATGA
TTCTTTTCCTACTCTTTCTCTCACCGCATATGTTTTATCCTTACATAAAC
CGAAACTTCAGAACGTGTTACCATGACTATGAGGCTGCGCGAGTTGATTC
GGGCCGTCAGGGCATGCAAAACGGCGGCCGAAGAGCGCGCTGTCATAGCA
AAGGAGTCTGCGTTGATCCGAACAGCAATAAAGGAGGAACACGAACAATA
CCGGCACCGGAACGTGGCCAAGCTCTTGTTTATTCATATGCTGGGATATC
CCAGCCACTTTGGGCAGATGGAGTGTCTTAAACTGATTGCCTCCCCACAT
TTCTTCGAAAAACGCATCGGGTACTTGGGCCTGTCATTGCTCTTAAcaga
gcaagaagaagtctTGACACTCGTGACCAACTCAATCAAAAACGACCTCA
ATAGTCCCAACCCATTCGTGGTAGGACTTGCGCTGTCGGCGGTTGGAAAT
CTGGCCACCGAGGACATTGCACGCGACCTAgccatggacgtggacaagCA
CCTCAAGTCCAACAACAGCTACCTGAGGAAGaaggccgccttggccacga
TCCGCATCTTCCAGAAAGTGCCCGATTTAGTGGAGGACTTCATCGAACGg
atcacctccctcctgaagGACCGGAGCCACGGTGTGCTGATTGCGGCGGT
GGAGCTGATGACGGAGGTGATGAAAATGGACCCTGCTTTTACGTCCGCCT
TCAGCCGCCTGGTGCCCTCCGTCCTGCGACTCCTCCGGAATCTGTTGACC
ATGGGGTACGCCCCAGACCACGACATCGCCGGGATCACAGACCCGTTTCT
CCAGGTGAAACTGCTCTACATGCTGCAGTGCCTGGGCCGGGACAACGCGG
AGGCCTCAGAGGCCATGAACGACTTGCTCGCCCAGGTCGCCACCAACACG
GAGACGGCCAAGAACGCCGGCAACGCCATCCTCTACCAGTGCGTGCAGAC
CATCATGAGCGTTGAGTCCGAGGCGGGCCTGCGCGTCTTGGGCATCAATA
TCCTTGGCCGTTTCCTCCTGAATCGGGACAACAACATCCGGTACGTGGCG
CTCAACACCCTGAGCAAGGTGGTCGGCAGGGACGCGGCCTCCGTGCAGCG
GCACCGCAACACCATCGTGGAGTGCCTGAAAGACCCAGACGTGTCGATCC
GCCAGCGGGCCCTTGAATTGATCTGTCAGCTTGTCAACCCGCAAAACGTC
CAAGAGCTCACGCGGGAGATGCTTAACTACCTGGTGGTGGCTTTGCCCGA
GCACAAGGCGAGCCTCTGCAGCAAGATCATGCACGTGGTGGAGACCTACG
CACCCTCGCCCCTCTGGCGCCTCGACACATTGATCACCATGCTGGCCATC
GCGGGGGACGCCTGTGACCCGAGCATCCCGCACGCCCTCGTCTACTACCT
GTCCACGGCCGAAGACCTGCAGCGTTACGCGGTCCACAAGCTCTTTTTGC
TCCTGACAGATGATGCCTCCCAGCTTGGtctggtgctggcggcggtgtGG
GCAATCGGGGAGTTCGGAGACTTGCTCCTGCAGGCTCAGCCTGCCCTGGA
CGAGGACACGTCGGCCATGGAGCCCCAGACCCCGGCGGCAGTCTTGgacg
cgctggaggaggtggtcaCGAACCACGGAGCCACGCAGGTCACCCGAGGC
TACGTGTTGGTGGCCCTGTTGAAGCTCTCGGATCGTTTCGCggcggcctc
gccctccgtttCGGATGCGGAGATGCGGCGGCTGGCTGGTCTCCTTTCCA
GGTACGACACGTCCTTGCAGCTCGAATTGCAGCAACGATCCTGCGAGTTC
CGCCAAGTGTTGGCCCCAGGGGTGGAAGGTGTGCGGCCGGAGATTGTGGG
GAGGATCCCGCCCTTGGATGAGGCCATGCTCAcggcgaggcggggaaggt
ttcccgggagagaggacgggggggggaagcggggggtGTCAATGGAGGGA
TCTCTgttcggggaggaagggacagggaagaaaggagggaaggaaggacc
aGCGGCGTCCGGAGGTGCGACAGATTtgctggacctggaggagatcttcg
ggggggcgccggggcCGGGGAACGGGGGAAACGGGATGACGGGTGCGGTG
ACGGGAGGAGCCAGcctgaaggggggggaaagcgcggACTTACTGTCGGA
CATCTTCGCGTCGAATGTGCCCGTGGCAATGCCGGCGTCGGCACCGGTGG
CGCTCAGCACTCCTTTCGATCAGGtcgtggtggcggaggaggggcacttG
CCGcacgccccgcccccctccttctcgtcctcatcctccctccctccgcc
caccccgtccgcgcccctgcccccggccctcccgcAGCAAACCACCGCAA
GCATCACGGCTTTCGACCAGGACGGATTGCGCATTACCATGGAACTGTCC
AAGCCCAGCCCCGCGGACGAtccctctgcctctctccttctctgccgcTT
CGACAACCGCACGGACGTCACCCTGAcaaacctctccttccagtGCGCCG
TGCCTAGATACGTAAAGTTGGAGCTGAGTCCGGCCTCTGGAAGCACCTTG
CTGCCCAACACGGCGGGGAGCGTGACGCAAGCGGTCAGGGTCGCCAACAG
CCTCCTGGGTCAGAAGCCCCTCCAGCTCAAAATCAAAGTGCAGTACACGG
ACGGCCGGGGCCAGCCCATCACCAAGATGGGTACCGTGGCGAATTTCCCG
GCTGGGTATTGAGATGGCGTGATATGTTGGGAAGGTCTAGGTGTATAACT
CCCGTCACCGCCGATCGTAGCATCTTGGAATTGTGGCTCTGGCGGGGAAT
GTGAGCACAGCGGTGTGAAGAACAGTGCTTTGTATTTGTTATAGTCTGTG
GTCGAGCCAATTTTTTCGCAATCGCTGTGCCTTTCTGACCTGGCCACGCT
TTATTTCTTTTACTCGCCTGCCTCGACCACCAAAGA

Coding sequence (CDS) from alignment at CM002464.1:383338..386323+

>rna4797 ID=rna4797|Name=rna4797|organism=Nannochloropsis gaditana|type=CDS|length=2640bp|location=Sequence derived from alignment at CM002464.1:383338..386323+ (Nannochloropsis gaditana)
ATGACTATGAGGCTGCGCGAGTTGATTCGGGCCGTCAGGGCATGCAAAAC
GGCGGCCGAAGAGCGCGCTGTCATAGCAAAGGAGTCTGCGTTGATCCGAA
CAGCAATAAAGGAGGAACACGAACAATACCGGCACCGGAACGTGGCCAAG
CTCTTGTTTATTCATATGCTGGGATATCCCAGCCACTTTGGGCAGATGGA
GTGTCTTAAACTGATTGCCTCCCCACATTTCTTCGAAAAACGCATCGGGT
ACTTGGGCCTGTCATTGCTCTTAAcagagcaagaagaagtctTGACACTC
GTGACCAACTCAATCAAAAACGACCTCAATAGTCCCAACCCATTCGTGGT
AGGACTTGCGCTGTCGGCGGTTGGAAATCTGGCCACCGAGGACATTGCAC
GCGACCTAgccatggacgtggacaagCACCTCAAGTCCAACAACAGCTAC
CTGAGGAAGaaggccgccttggccacgaTCCGCATCTTCCAGAAAGTGCC
CGATTTAGTGGAGGACTTCATCGAACGgatcacctccctcctgaagGACC
GGAGCCACGGTGTGCTGATTGCGGCGGTGGAGCTGATGACGGAGGTGATG
AAAATGGACCCTGCTTTTACGTCCGCCTTCAGCCGCCTGGTGCCCTCCGT
CCTGCGACTCCTCCGGAATCTGTTGACCATGGGGTACGCCCCAGACCACG
ACATCGCCGGGATCACAGACCCGTTTCTCCAGGTGAAACTGCTCTACATG
CTGCAGTGCCTGGGCCGGGACAACGCGGAGGCCTCAGAGGCCATGAACGA
CTTGCTCGCCCAGGTCGCCACCAACACGGAGACGGCCAAGAACGCCGGCA
ACGCCATCCTCTACCAGTGCGTGCAGACCATCATGAGCGTTGAGTCCGAG
GCGGGCCTGCGCGTCTTGGGCATCAATATCCTTGGCCGTTTCCTCCTGAA
TCGGGACAACAACATCCGGTACGTGGCGCTCAACACCCTGAGCAAGGTGG
TCGGCAGGGACGCGGCCTCCGTGCAGCGGCACCGCAACACCATCGTGGAG
TGCCTGAAAGACCCAGACGTGTCGATCCGCCAGCGGGCCCTTGAATTGAT
CTGTCAGCTTGTCAACCCGCAAAACGTCCAAGAGCTCACGCGGGAGATGC
TTAACTACCTGGTGGTGGCTTTGCCCGAGCACAAGGCGAGCCTCTGCAGC
AAGATCATGCACGTGGTGGAGACCTACGCACCCTCGCCCCTCTGGCGCCT
CGACACATTGATCACCATGCTGGCCATCGCGGGGGACGCCTGTGACCCGA
GCATCCCGCACGCCCTCGTCTACTACCTGTCCACGGCCGAAGACCTGCAG
CGTTACGCGGTCCACAAGCTCTTTTTGCTCCTGACAGATGATGCCTCCCA
GCTTGGtctggtgctggcggcggtgtGGGCAATCGGGGAGTTCGGAGACT
TGCTCCTGCAGGCTCAGCCTGCCCTGGACGAGGACACGTCGGCCATGGAG
CCCCAGACCCCGGCGGCAGTCTTGgacgcgctggaggaggtggtcaCGAA
CCACGGAGCCACGCAGGTCACCCGAGGCTACGTGTTGGTGGCCCTGTTGA
AGCTCTCGGATCGTTTCGCggcggcctcgccctccgtttCGGATGCGGAG
ATGCGGCGGCTGGCTGGTCTCCTTTCCAGGTACGACACGTCCTTGCAGCT
CGAATTGCAGCAACGATCCTGCGAGTTCCGCCAAGTGTTGGCCCCAGGGG
TGGAAGGTGTGCGGCCGGAGATTGTGGGGAGGATCCCGCCCTTGGATGAG
GCCATGCTCAcggcgaggcggggaaggtttcccgggagagaggacggggg
ggggaagcggggggtGTCAATGGAGGGATCTCTgttcggggaggaaggga
cagggaagaaaggagggaaggaaggaccaGCGGCGTCCGGAGGTGCGACA
GATTtgctggacctggaggagatcttcgggggggcgccggggcCGGGGAA
CGGGGGAAACGGGATGACGGGTGCGGTGACGGGAGGAGCCAGcctgaagg
ggggggaaagcgcggACTTACTGTCGGACATCTTCGCGTCGAATGTGCCC
GTGGCAATGCCGGCGTCGGCACCGGTGGCGCTCAGCACTCCTTTCGATCA
GGtcgtggtggcggaggaggggcacttGCCGcacgccccgcccccctcct
tctcgtcctcatcctccctccctccgcccaccccgtccgcgcccctgccc
ccggccctcccgcAGCAAACCACCGCAAGCATCACGGCTTTCGACCAGGA
CGGATTGCGCATTACCATGGAACTGTCCAAGCCCAGCCCCGCGGACGAtc
cctctgcctctctccttctctgccgcTTCGACAACCGCACGGACGTCACC
CTGAcaaacctctccttccagtGCGCCGTGCCTAGATACGTAAAGTTGGA
GCTGAGTCCGGCCTCTGGAAGCACCTTGCTGCCCAACACGGCGGGGAGCG
TGACGCAAGCGGTCAGGGTCGCCAACAGCCTCCTGGGTCAGAAGCCCCTC
CAGCTCAAAATCAAAGTGCAGTACACGGACGGCCGGGGCCAGCCCATCAC
CAAGATGGGTACCGTGGCGAATTTCCCGGCTGGGTATTGA

Synonyms

Publications