rna4792, rna4792 (mRNA) Nannochloropsis gaditana

Overview
Namerna4792
Unique Namerna4792
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2613
Alignment locationCM002464.1:369921..370922 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100048g32.10286.mrna
Orig protein idgnl|cribi|Naga_100048g32.10286
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:369921..370922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100048g32gene4629Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25914.1cds4780Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4792rna4792-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4792 ID=rna4792|Name=rna4792|organism=Nannochloropsis gaditana|type=mRNA|length=2613bp
GCTTCTTTCAGTTTCCCTTTTCGGCCGCGATTGTCAAAGATGGCGCCACC
ATCGATTTCACTTTCACACAACCCCGCTCAAGTTACGACACGTATGCGTC
TTCACTCCCTCCGACGCGGCCAAAAGGCATACGTGTGCGAGGAATTTAGT
AATGATTCTTAATGTTTCTCCACCCAATGCAAAGGCCGTGACTCAGAAGT
ACCAAAACATCGCCTACTTTGTCCATTCGTCTATATTAGGGGGTCATGAG
CTCTGGTCAGACATATGTGCCTCGCATGACTTCATCTCCCACTCATCTCC
CTACACGAGCGATAATTCTTATGAAAAGACCATTTCTTGACGACCTAATG
CAACTTTATGATGCAAAACGCAGGAAAACATTATTACCATACGCTTTTTC
TGTCTTATATGGAGATCTATTCCATTCCTGTTGGCATACCTCCTCATATT
ACTGCGCTCGACAAGCGGCTCCGCTAAACCCTCAGCTACCTTTTTGGGCC
CCCGGTCACTTGGACGTAACCCCCCTCCAGCAGCTAAAACAAGCATAACA
AATATGCTGAGTGAGGTTTCATCCTCAACGACAGGAATCGTTTGCGAGTT
GCGAGAGAGTTGACGGCGTTGTGAAGGGTTGGAAGCGAGTGTGGGCGCAA
CGAAGCTGCGACCACAGGGGGGAACCGCACATGCCCGGTCTTGTAGTGAC
GGTACTAAGCGACTCCGAGCTGGAGACAATGGGCATGCGGGAGGCGACGG
ATCCGCCATCACGCGTGCACGGAGTGGCGTACCGAATCCCCGACGAAAAC
GTCGCGCGCGTGCTGGATGAGCTGGATTTCAGGGAAAAGGGTGGCTATAC
TCGGGCCGTTGTGGAGGTCAAGCCCACGACATCTTCAACCGGGGGCACGG
ATAAGAGCGGCAGACAAGAGGTGATTAGGGCACTGCTTTACACTGCCAAT
GCAGACAACCCAAACTTCCACCATCCCAGTACGCTAGAAGAGGCAGCCCA
TATCGTGGCCTGGTCCCGAGGGCCGTCGGGGGAAAATCGAGAGTACTTGT
TTGAGATTGAGGCTTACCTGCGTCGTGCGGGGGCCGAGTGCCCAGAGACC
TTCGCTCTGACCACGCGTGTCGAGGAAGTCTTGGAGAGAGGCTTGGACCG
CCGGGGGAGTCTGGATGCACGCTTTCGGCGCGACCTGGTGGTGGTGTCGG
GGACCCAGGCCCGCGGAGGGACCGAGGGGATATGGGCCGTTTGGCAGCGC
TTGAGACTGCACGCGTGGGGTTCGAACCAACACGGACAGCTGGGCAAGAG
GGCGGAGGCGGTGGGTGATGGAGCATTTGACCTGGATATGGGCGTCAAGA
CCGACAAGGACGACGAATGGCCGTTGCCGCAACCAACGGTCGTGGAGGTG
GATGTCGCCACCACGGTCTCGCTTCAGAGTGGTTCGCGCGCCCAGGCCGC
AGACGAACACCGCCTCCTGGTCCGACAGCTCGCGGCCGGCGGGGGGCACA
GTGCGATTGTGACAGGCGAGGACCGGCTGTACCTGTGGGGGTGGAATGAG
GCTGGGCAGGTAGGAGGGAGCAAGTACGCGACTCTGGACGGCACGCACCG
AGTCCACGTCTTCCCTCGCCGGGTGGCCATGGTCGCCTTGGGCCACGCGC
ACACTTTGGTGTTGGAGAAGGACACGGGGAAGCTGTACGGAGTGGGGGGC
AATGCGGCCGGGGAGGCGACAGGCGTGGTCATGGAGCAACGCAAGCAGTG
CCGCGCAGTGGGCGGTGGATTAGTGACCTTGGACGGAGGTAGCGACCCGA
TTCGATTCAGTTGGTGCGATGCGGGGGTCCGCCATTCTGCCGGGGTGACG
AGGGATGATGGGCGCTTGGTCACCTGGGGCGTGGGCCGGTCGGGGGCTTG
TTTGCCGGCCTCGGTGAGAGGCTGGGCGCCCGTGGATGGCGCGAAGGTAC
GCAAGGTCTGGTGTGGGTGGCAGCACACAGTAGTATTGGACGATAGAGGA
CGAGTTTGGACCTTGGGAGCGAATAAATACGGTCAGCTGGGGCGACGGGG
CAGTCAAAACGACGGATTGCCTGAGCTAGTGGAGTGGCCCGAGGGTGCTG
GAAGGGAGGGAGAAGGAGTGCGGGTGGAAGAGGTGGCCTGCGGTTGGTCG
CATGTACTTGTCAAGACACACGATGGAGAGATCTGGGGCTGGGGCCGCAA
CACATTCGGGCAGTTGGGCTCGGAGGCAGTTGCGGAGCCGGAGACCATCG
GCAGAGACTACCTTCCGCGTCCACTCTTGAAAGACAAGGACCGGCTGCCT
CATGGCGTGCAGGTCGACAAGGTCACGTGCGGGTCCGAAAGCAGTATGTT
GGTGGGAAAGGACGGCTCTTTGTGGGTGTGTGGGTGGAATGAACATGGAA
ACTTGGGCGTGGGCGATGGAAAGGACCGAAAATCGTGGACCCTGGTCCCG
GGACTGTCGGCGGGCTCAGGAGGCGGGAAAATGCTGGTGGCGTGTGGGGG
TGCGCACACCCTTGCCATGTCTAGGGAGCCGTCCGACACCAGTGTGAGAT
GATGGAGCATAAATTGTGCGCAATTTCATAAATGCAGACCGATAAAAAAG
GGGCATCAGACCG
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protein sequence of rna4792

>rna4792-protein ID=rna4792-protein|Name=rna4792|organism=Nannochloropsis gaditana|type=polypeptide|length=333bp
MDTFDYRHVTKVQGRPVEGLLGLYSFSVDANTIPREQVWQIQLKLSSNAQ
QITSVDIHDFSVIIDTLPGSGSVGIGGLPLSNTTTRLGDLNMNKSNRGAT
STSMDLSDSARSQASNFYTSTRSMSASTRTAATTKVGRGLSTADRDATRS
ASHVNTGAPGGSAATSLSSSSSALSASSLVPRAHGNKASKLSRSTELSSS
AMGRTGGSGGKTGELVLRGGRGEGEREAVVPHTGHDAAVMRQETEAVASV
LNAVCEKMVGVMSEKTKLYLAKAGRKTERRVLEKMAKLEERIEKFDNVLE
HATLSSREIEQALLALDENLPSPRKPSPVAVGP
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mRNA from alignment at CM002464.1:369921..370922-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4792 ID=rna4792|Name=rna4792|organism=Nannochloropsis gaditana|type=mRNA|length=1002bp|location=Sequence derived from alignment at CM002464.1:369921..370922- (Nannochloropsis gaditana)
ATGGACACATTTGATTATCGACACGTCACCAAAGTCCAAGGTCGTCCAGT
TGAGGGTCTACTTGGCCTGTACAGCTTTTCCGTCGATGCCAATACCATTC
CGCGTGAACAAGTGTGGCAGATCCAGCTTAAATTGTCGTCTAATGCACAA
CAAATCACGTCTGTGGATATACATGACTTCAGCGTAATTATTGACACACT
ACCAGGATCTGGCTCCGTGGGTATTGGGGGGCTGCCGCTGTCAAATACAA
CGACGCGTCTCGGGGACTTGAATATGAACAAGAGCAACAGAGGGGCAACA
AGTACCTCGATGGACTTGTCCGACTCCGCGAGAAGCCAGGCAAGCAATTT
TTATACGTCGACCCGGTCGATGAGTGCTAGTACGCGCACAGCCGCCACTA
CCAAAGTGGGTCGAGGCCTGAGCACTGCAGACAGGGACGCCACTCGCAGT
GCGAGTCACGTCAATACTGGTGCCCCCGGAGGTAGTGCTGCCACCTCCTT
GTCGTCATCTTCCTCTGCGTTATCCGCATCCTCGCTTGTTCCACGGGCTC
ATGGCAACAAGGCAAGCAAGCTCTCTCGATCTACAGAATTGTCATCCTCC
GCAATGGGCCGGACGGGTGGATCGGGCGGCAAGACTGGGGAGCTGGTGCT
GCGAGGGGGTAGAGGGGAGGGAGAGCGAGAGGCTGTGGTGCCTCATACGG
GACACGATGCTGCGGTCATGCGGCAGGAAACAGAGGCAGTGGCCTCTGTT
TTGAACGCGGTGTGCGAGAAGATGGTAGGTGTTATGTCAGAAAAGACAAA
GCTATATCTGGCCAAGGCAGGGAGAAAAACGGAGCGGCGTGTGTTGGAGA
AAATGGCGAAGCTGGAGGAAAGAATCGAGAAATTTGACAACGTATTGGAG
CACGCGACCCTAAGCTCCCGCGAGATCGAGCAGGCGCTTTTGGCCCTCGA
CGAGAACTTACCTTCGCCGCGCAAGCCGAGCCCTGTCGCTGTGGGACCTT
AG
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Coding sequence (CDS) from alignment at CM002464.1:369921..370922-

>rna4792 ID=rna4792|Name=rna4792|organism=Nannochloropsis gaditana|type=CDS|length=1002bp|location=Sequence derived from alignment at CM002464.1:369921..370922- (Nannochloropsis gaditana)
ATGGACACATTTGATTATCGACACGTCACCAAAGTCCAAGGTCGTCCAGT
TGAGGGTCTACTTGGCCTGTACAGCTTTTCCGTCGATGCCAATACCATTC
CGCGTGAACAAGTGTGGCAGATCCAGCTTAAATTGTCGTCTAATGCACAA
CAAATCACGTCTGTGGATATACATGACTTCAGCGTAATTATTGACACACT
ACCAGGATCTGGCTCCGTGGGTATTGGGGGGCTGCCGCTGTCAAATACAA
CGACGCGTCTCGGGGACTTGAATATGAACAAGAGCAACAGAGGGGCAACA
AGTACCTCGATGGACTTGTCCGACTCCGCGAGAAGCCAGGCAAGCAATTT
TTATACGTCGACCCGGTCGATGAGTGCTAGTACGCGCACAGCCGCCACTA
CCAAAGTGGGTCGAGGCCTGAGCACTGCAGACAGGGACGCCACTCGCAGT
GCGAGTCACGTCAATACTGGTGCCCCCGGAGGTAGTGCTGCCACCTCCTT
GTCGTCATCTTCCTCTGCGTTATCCGCATCCTCGCTTGTTCCACGGGCTC
ATGGCAACAAGGCAAGCAAGCTCTCTCGATCTACAGAATTGTCATCCTCC
GCAATGGGCCGGACGGGTGGATCGGGCGGCAAGACTGGGGAGCTGGTGCT
GCGAGGGGGTAGAGGGGAGGGAGAGCGAGAGGCTGTGGTGCCTCATACGG
GACACGATGCTGCGGTCATGCGGCAGGAAACAGAGGCAGTGGCCTCTGTT
TTGAACGCGGTGTGCGAGAAGATGGTAGGTGTTATGTCAGAAAAGACAAA
GCTATATCTGGCCAAGGCAGGGAGAAAAACGGAGCGGCGTGTGTTGGAGA
AAATGGCGAAGCTGGAGGAAAGAATCGAGAAATTTGACAACGTATTGGAG
CACGCGACCCTAAGCTCCCGCGAGATCGAGCAGGCGCTTTTGGCCCTCGA
CGAGAACTTACCTTCGCCGCGCAAGCCGAGCCCTGTCGCTGTGGGACCTT
AG
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Synonyms
Publications