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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100048g29.10274.mrna |
| Orig protein id | gnl|cribi|Naga_100048g29.10274 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002464.1 | supercontig | CM002464.1:364187..366808 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4790 ID=rna4790|Name=rna4790|organism=Nannochloropsis gaditana|type=mRNA|length=5280bp
AGACTCACACAAATATCAGCCAATGTTAAACCACGTATCGATATTTTTCT
CTTTATGCCACAGGGATCATTTGCTCGGAATGGTAGACGAGTAAATGATG
GCTTCCACGACGAGCGGCGCCCTACTAGCGACCTATCCAACGCCTCGATT
GCTCCGACCATCCAAAGTACAAATTACCACGTTGCAGACACCTATCAGTA
GGCAAACAGAAGAATTCAATGGCGACGAGAATGAGTACGTCCTTCATTGT
GTACACACTGTTGACGGTAGTACTTTGGCTGCTGCGCTGTCAAACTATCA
AATCAAAATCTACGATCGTTACACGCTCGAGCCTAAATCCTCCTCTGCCC
TGGAAGGGCACTTGGGTCCTCTGACCGGCCTTTGTCCCTCGCCGGATCAT
CCGTCCCTTCTCGCTTCCTCTTCTGAGGATAAAACTGTGCGCTTGTGGGA
TCTACGGGTGCAATCTGGCTGTGTGAGTGTGATTCAGCAAGTCGACGAAG
CCCTCAGCTGCGCCTTTGGAAAAGGGTCGGGCTTGTTGGCCGTGGGGGTG
GGATGCCATGTGGATTTTTTCGATGCTCGTCAAACGAAGCAGGAATCTAG
AGGAGCAAGTGGAGGAGCACAAGGAGGTAGCAGAGGAAGTGGAGAGAGGC
TGGGGCGATACGCGGACGTCCACACGGACATGGTGACGAAGGTGGTCTTC
CACCCCTCACAAACCACGACATTGGCGTCAGCCTCAGAGGACGGGCTGGT
ATGTTTGTATGATATAGGAGTGAGTCAGGCCGATGAGGCGCTGGCCTGCA
TCTTGAACGCGGAGAGCCCTGTCAGGGACATGACTTTCTTCGGGGCCAAA
GGAGACGGGTTGGCGCTCTTGACAGGCAGCGAGGGGACAAGTGTGTGGCA
CTGGCCCTCAGCTTTAAGGGCGTTAGATGTGGAAGATTTACGACAAAGTG
CTGGAAGTTTTAATCGAGAAAAGGCATTGTTCTCCATCCAGTACCATTAT
GACCAGGGAACGGACCGTCTCAGGCTGGCCTTGAGTGATGTGGAGGGATC
CGTCACTGTCGTGGAGGTACAGCCTGGGGGAGAGATGCACCCTCTTCTCC
GGCTTGAAAGCGGACATAAGTGCTTGGTGCGTGCTGTTGATTCTCACAAC
GGCACCTGGGTTACGGGAGGGGAGGACGCGCGTCTCTGTCTGTGGAATGA
GAAGGAACAGGAGGGGCAGGTCAACCAAAGCACCGCATTCGACCGCAAGC
AAAAGAAAGGCAAAAAATTTGCCCCTCATTTCCAGCCATATTGAGCCAAG
AGAAGGGACAATCTCAGAAAGCATACAATACACACGAATCAAAAGGCTTT
CTTCCCAAGTTGTAGCAGCTCCTTCGAGGGAGGGGATCGGATCGATCGAT
CCGATACACCGCTGATAGCTATCCTTGGAGCGTATGCACCTTTGCCAGAC
TTTTGGGCGTCTCTATTGCTCTTGTACAACGCATTCGTTATAAGTGGTTT
CTATGAATAGGGCTTTAAATTTATCATTATGCACAATTGTCCCACTTGCA
AGGCCTTGTTTTTCGGGGCGGTTGCAGTCCAAAGAGAAGGGCAACGTCTT
GAAGCGCTTTCTGTTTATTGTTCTTATTGGACTTTCCCGATAACTACAGC
AGGGGGTTGTATCCCGGTTACGGGCATTACAGAAGAAAACCGGCATTAGA
TGTCTGTTCCGAATGATGAGGAAATTATGCCACGCGCAGATGAACCCTCG
ACGTTGACGAGAAGTCCACCCTCTCAAACGAGTCAGGCCGCCCATGCTTC
ATTGAGACCAATTCAAAGCCAGTTTTCGGGTGCCACGCCTGTCTGGAGAA
AGCAGCGATCCCTGTTGATACTTGGAGCATGGATGGCTTTTGCTGGTTTG
GTCATCCTGGGACTGGTGCTCACGATATCACACAATGAAAGCCGGCGTCA
ACGCCTCCTGGAGAGAGGGAGTCTCCCCTCCCGAGTCATGTTGGGCCCTC
CTCCATCCCAAGACGTGCCAATTTTAGGAACCCATTGCTGTACCACCGAG
TACGGCCTTGAGGCGTCCACGATGGCTGCTCAGGCCACCAACTCAGCGGC
GTGGTCGATGGGACATGGCAAGCATAGTCGAGCACCGCCCAGCCTCGAGG
CCAGGCTTTTCCGGGAAGCTGTGGCCGATGCGGATTCAACGGGGGCAGGA
GGCAACCAGGGGCTTTCTGGAGTAGTATATCTGGTTGTAACGCCTCGCCG
CACGGAAGACGCGCTCGGACAATTGCTCAGGCGGCTGCACGAGCATTTCT
TGCGCCTGCATCGATATCCCGTCGTCGTGTATCTAGCCTCCGAAAACTTG
ACGCAAGATTCCCGAGATCACTTGCAGGCCACTGTCCCGTCCAGCATTGT
AGACTTTCGCCCGGTCCCCGATCTCTTGGAGCAGCACCAAGCCCTGCAAG
CGCAGGGGTCTTCCGGAACGGAGAGGAAACCGGCCATCCTCAGGCCGGAG
GCGGCGGCGTACGAGCGTGCCCTCTGGGATTTCCAGGTCTCGGAGGCCCC
GCGCCTGCTGGCACAGGAGTTCGAGTGGATCCTGCACCTGAGCGAGGACA
CCCTCTTGAGCCAAGACGTGCTCCTAGACCCATTCCACGCCTTGAGGATG
ACGGACCGGAGGCTCGGGTACATGGCGGCGCACAGGGCCGTGGACGAGGA
GGGGCTCTGGGCCTTCGGACGGAAATTTGCGGAGCAGCACGTGCTGGCCA
GGAAAGGGAAGGGAGAGGCGGCACTGCACTTGACTTGGAACGTGCCCAAG
GCGATCGACGCGCGATGGATCGCCTATCACAAGAGCGTCTTCACGTCGGA
GTTGTACCGGCTCATGGTGGTCGCGTTGGCGGCTTCCCCTCTCACAGACA
CCCTCCCTGCCTCCACGCCGTCCCCGACGAATGCTCCTAAAGACGCTTCT
CTTTCGCGCCTTTCTCAGGGGCGAAGACCCCCGCTTTCCCTTCCCTCGGC
TCTGTTTGACGCCGGTGACGTCCTACTTGATCCGTCTGTTGCAGCCATCG
CGGCGGCTGTTTCCTCTTCCTCTCCGACGTCGCCGTCCAGCCGCATACAG
TCCGAAGTTGCGTTGGATAGGTATCGTAAAGAAGGCGAAGCTGCTCCCTC
TCCGTCCATGGTGAGCCTGCGGCTGCCCGATCCTGCCGCCGTCCTGACCT
TGGGAAGCCTGGTCACCCTCACCCAGGACGAATTCATGCAATACCGAGGC
TTGAATCTTGAGCGCCCTCCCAAGCGGACCGATGGGCTCCAAGGCCTCTC
CCCCGAGGAGGCAGCAGGCGTGACGCGGAGCTCCTGGCGGGGCATCGAGA
TCATCGCGACCGAGGCGGAGGACCTCCAGCCTTTGTTCTCGGTGCGGAAC
GCGGGCTGGTTGGGCGCTGATGTCGCCACGTCCTTCCGGTTCCCCCCCCG
GCACCCCACGGGCCTGCGCACCTCTGGTGTGGCGACTTCGACGTCGGATG
CGACTCAGGGGCCAGGAGATGGGAGAACAGAGGGGCCGAAGAAAGAGGGA
GACGTGGGGGAGGCGGAGCACGGAAAGTACATGTGGCTCTTCGGAGATAC
CTTGCTCGGCTACGCCAACGAGGACCGGCGCCTGTCAGGGGCATTCTTCC
TGCACAACAGCGTGGCCTTCTTGCCGGTCATCAATGTCAGCGACCCCCGT
GCGAAGCCTCTGGGCCCCGAGGACGTGGTCTTCGCCTGGAACGTGTCCAA
GGGGGGATGTCCGGTCTCGATCTTCGTACGCGGGCCCCCGCAAGATGACG
AATGCGTTCACACCCAAGACTATCTGTGGCCCATTTCGGGCATCGGAGTC
AGCTACCTGGAGCCCCGGGCCGAGAAAAAAGGCAACGTCAATGGCAAACG
AGGGAGAGGGGACAGCGGCAGCGAGTTCGACAGCAGCACCGCGGAGGGAG
ACGTTGTGAGTAAAGTCATTGTTCTGGCCGTGCGGTGGGCATACGTCAAG
TCTCACACCGCCTCCGTGGATCTCTTTGACGACAACGCGTTCAACTTCAA
TATCCTGGGCACGACAGTCTTGGTCGTGGATAATCCGCACGCCCACCCTA
CACAGTGGGAATACCGCCAGCGGGATCTGCCGGGAACGGACGCGAATCTG
AATTGGTACTCGGCTATGATGCATGGAGACAAGGACGCAGAGCTCGCCAC
GGGCCCGGAGGACATGATCTATTTGTTTGGCGTCAATAACACGGAGGCCG
TCGGGACGCCACCGCAGCAGTGGCAGTATGAGACACTCTCCCGCCTTCCG
GTCAGGAGTCTGGTCGACCTCTCCTTTCGAGACATGGAGGTGTGGGCGTT
GACTAAGGGATCCCCGGACGAGAAGGCTCAAGCAACCACCGACACGGACA
CGCGCCTGACCAACACCACCTGGGCCCCGTACCCCCTTTTCCTCCACCGG
CACCTGAAGGCTGCGCCTTTGGTGTTTCCTGTCTTCTCAGAGACTAGCGT
GCGTTACAGTCATTCTCTAGGGGCCTATTACGGTGTGGTAGTCGACTGGC
TCTCCTCTAATGTCGTCCTTTACCTAGCAGAAGACCTCACTGAGGCATGG
GAGCCTGTGGTTGTGTACAAGATTCCCCCACCGTTCAACGATCCAGCTGT
TTACATGACGTACGCGGGTAAAGCTCACCCAGAGTTATCGCGCGAAGATG
AGCTTATTTTGACATTCATGACGAACGCTCCGGGGGATTTGGAACCTCTG
TTCGAGACAGGCGCTAAGGACGTGTATGTGCCACGATTCCTCCGCTTAAA
ATTGGAAAGGCCTGCTCCAAAAGCACTGAATTTTGTGGTGGTACAGGAAA
ATAAGTCATTGGGAGGAACACAGACAAGAATTGCATGTGGTACGGGTCTA
GAGGAAAGCCACATAGCTAAACCAGCCGCGTAAATATTGGCTTTCAGCTT
CGGGGGACGGTGCATGTCCGTACTTAGAATTAGGGCGCTGACGTGATTAA
TATGCGCGACTGAGCCACAGATGAAAGTGAGATTTTGTGAAAATAATGTT
TGAATTCTGTGAAAATTCGAAATCAAGACCCGACTAGTCCACTTGCGTGT
TGATAGACTGAGCTGAAAGTAGGAAGAAGTATAGTCTGTATGCGAAGAAA
AATCAAGAGAGTCTTTTTTTACGACTGTGTGTGATATTTCGTCCTAATTC
CCGGTCAGCCCCACACCGCTGTCGTTTGACACAGAAGACGACGAGAGGAC
CTCGATCGGTGCCAAAGACTTCAATTTTTC back to topprotein sequence of rna4790 >rna4790-protein ID=rna4790-protein|Name=rna4790|organism=Nannochloropsis gaditana|type=polypeptide|length=179bp
MVGAIEALDRSLVGRRSSWKPSFTRLPFRANDPCGIKRKISIRGLTLADI
CVSLKAVQMRRCDGASTSGSRRLKHPAIRHCLLLFTWARISSYIKNTLAL
CSHIGSPQRGIVRPSSCPLLLHRPPRPRRPCLPLLTAGPLCKGLCPKHNT
SAPPPHRVPARSIIVLLHLLKFKNWARGS back to topmRNA from alignment at CM002464.1:364187..366808+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4790 ID=rna4790|Name=rna4790|organism=Nannochloropsis gaditana|type=mRNA|length=2622bp|location=Sequence derived from alignment at CM002464.1:364187..366808+ (Nannochloropsis gaditana)
cctcccgtaaCCCAGGTGCCGTTGTGAGAATCAACAGCACGCACCAAGCA
CTTATGTCCGCTTTCAAGCCGGAGAAGAGGGTGCATCTCTCCCCCAGGCT
GTACCTCCACGACAGTGACGGATCCCTCCACATCACTCAAGGCCAGCCTG
AGACGGTCCGTTCCCTGGTCATAATGGTACTGGATGGAGAACAATGCCTT
TTCTCGATTAAAACTTCCAGCACTTTGTCGTAAATCTTCCACATCTAACG
CCCTTAAAGCTGAGGGCCAGTGCCACACACTTGTCCCCTCGCTGCCTGTC
AAGAGCGCCAACCCGTCTCCTTTGGCCCCGAAGAAAGTCATGTCCCTGAC
AGGGCTCTCCGCGTTCAAGATGCAGGCCAGCGCCTCATCGGCCTGACTCA
CTCCTATATCATACAAACATACCAGCCCGTCCTCTGAGGCTGACGCCAAT
GTCGTGGTTTGTGAGGGGTGGAAGACCACCTTCGTCACCATGTCCGTGTG
GACGTCCGCGTATCGCCCCAGCCtctctccacttcctctgctACCTCCTT
GTGCTCCTCCACTTGCTCCTCTAGATTCCTGCTTCGTTTGACGAGCATCG
AAAAAATCCACATGGCATCCCACCCCCACGGCCAACAAGCCCGACCCTTT
TCCAAAGGCGCAGCTGAGGGCTTCGTCGACTTGCTGAATCACACTCACAC
AGCCAGATTGCACCCGTAGATCCCACAAGCGCACAGTTTTATCCtcagaa
gaggaagcgagaaggGACGGATGATCCGGCGAGGGACAAAGGCCGGTCAG
AGGACCCAAGTGCCCTTCcagggcagaggaggatttAGGCTCGAGCGTGT
AACGATCGTAGATTTTGATTTGATAGTTTGACAGCGCAGCAGCCAAAGTA
CTACCGTCAACAGTGTGTACACAATGAAGGACGTACCTAGACGGGTTTTG
CGTCGGAACGGACGTGGCGAGCGTCGTTGAGTTTGGACTTCACTGACCTC
CCGACCACCAAACTCGGATACATTCCTTAAAAGATACATTTATTGGTCTC
GCAGCCCGATCCCAAACTTACTCATTCTCGTCGCCATTGAATTCTTCTGT
TTGCCTACTGATAGGTGTCTGCAACGTGGTAATTTGTACTTTGGATGGTC
GGAGCAATCGAGGCGTTGGATAGGTCGCTAGTAGGGCGCCGCTCGTCGTG
GAAGCCATCATTTACTCGTCTACCATTCCGAGCAAATGATCCCTGTGGCA
TAAAGAGAAAAATATCGATACGTGGTTTAACATTGGCTGATATTTGTGTG
AGTCTCAAGGCTGTCCAGATGCGCCGATGTGATGGCGCAAGTACCTCTGG
GAGCAGGCGCTTGAAGCATCCGGCGATACGCCATTGCCTTCTTCTATTCA
CTTGGGCTCGCATTTCTTCTTATATCAAGAACACTTTGGCTCTTTGCAGC
CATATAGGGAGTCCCCAGCGAGGGATTGTACGTCCATCCTCATGTCCTCT
GCTCctgcatcgtcctcctcgtccgcgtcggccctgccttccccttttaA
CGGCTGGCCCTCTTTGCAAAGGGCTGTGTCCGAAGCACAACACAAgcgcc
cctccgcctcatcGAGTGCCCGCGCGAagcatcatcgtcctcctccatct
tttgAAGTTCAAGAACTGGGCCCGGGGCTCTTGACAATCTCCGATGTCTT
CACCACTGCGCAGTGCCGCCGtatggtggaggccgcagagGCCCGGGGCA
TGACTCCCACCAACCCTCGGAACCTACCTCCGCTCAAAGGACATGCTTTT
CGAAACAATGACCGTCTTTCGGTGCATGATGCTGCCTTTGCAGCGGAGCT
CTTCGACTTCCTGAGCCCTGCCTTGCACACGATCGTGCGTGTTGAGGACC
GGGCCCAGCCCTGtggcctctccccccattTTCGTTTCTACCGGTACCGA
AAAGGTAAGGGATGGGAAAAGTAAAGGCAGGaatgagaggaggggagtcC
TCTCAAGGCgcatcgaggaagaggatgtgTACGAGCTTCTCGACCTTTTG
CCACCAGCATGACCCCGTCGCGTCCCTCTGGCTGGCTCTTCAGGTGGCTG
TCACGTCATACTTCACTTTTCCTCGCTACTGACGCAATTTCTCCACATAC
CTGTGTAAGATGCCTGGTTTGGGCCTCACATCGATGAGACACAGCTGAGC
GGCGACGGGCAGATGGAGAGCGAGTTCACCATGCTCATCTATTTGACCGG
TGTAGATGATGATTGCCCCCTGGATCCGAAGCTAGGGCCCCTCAAAGGGG
GGGCGACGCGGTTCCATCACCATCGACATGCGGCACTCGACGTGGAGCCA
CGGACCGGCCTGGTGTGCTTGCACTGGCAGCTGCATAATTGTCTTCACGA
GGGGACACGGGTGTTAGGGGGGGTGAAGTGGCTGTTAAGGACAGACCTGT
ATTTTCCCCGACTCAGCAAAGTGGCGCGAATGGCGGCCTCCAAGCCGAAA
AggaccggggagggaggggtaaagGGTGGtaaagggagcaagggaggtgg
aagaagctGTACGGAAAGCCTGCTTGCCGAAAAGAGTGAGAAGAAATCCC
AAAAATAATGAGGCCCTCGGTG back to topCoding sequence (CDS) from alignment at CM002464.1:364187..366808+ >rna4790 ID=rna4790|Name=rna4790|organism=Nannochloropsis gaditana|type=CDS|length=540bp|location=Sequence derived from alignment at CM002464.1:364187..366808+ (Nannochloropsis gaditana)
ATGGTCGGAGCAATCGAGGCGTTGGATAGGTCGCTAGTAGGGCGCCGCTC
GTCGTGGAAGCCATCATTTACTCGTCTACCATTCCGAGCAAATGATCCCT
GTGGCATAAAGAGAAAAATATCGATACGTGGTTTAACATTGGCTGATATT
TGTGTGAGTCTCAAGGCTGTCCAGATGCGCCGATGTGATGGCGCAAGTAC
CTCTGGGAGCAGGCGCTTGAAGCATCCGGCGATACGCCATTGCCTTCTTC
TATTCACTTGGGCTCGCATTTCTTCTTATATCAAGAACACTTTGGCTCTT
TGCAGCCATATAGGGAGTCCCCAGCGAGGGATTGTACGTCCATCCTCATG
TCCTCTGCTCctgcatcgtcctcctcgtccgcgtcggccctgccttcccc
ttttaACGGCTGGCCCTCTTTGCAAAGGGCTGTGTCCGAAGCACAACACA
AgcgcccctccgcctcatcGAGTGCCCGCGCGAagcatcatcgtcctcct
ccatcttttgAAGTTCAAGAACTGGGCCCGGGGCTCTTGA back to top
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