rna4786, rna4786 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4786
Unique Name	rna4786
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2102
Alignment location	CM002464.1:345729..348190 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100048g24.10281.mrna
Orig protein id	gnl\|cribi\|Naga_100048g24.10281
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:345729..348190 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100048g24	gene4623	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4786	rna4786-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25909.1	cds4774	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:345729..348190+
coding sequence from alignment at CM002464.1:345729..348190+

mRNA sequence

>rna4786 ID=rna4786|Name=rna4786|organism=Nannochloropsis gaditana|type=mRNA|length=2102bp
CTCTGCCTTACTCTTCTTGAACAGTGCTTAATTGATACGGCACATTTTAT
CAATATTCACTCTTCTTTTCGGTTTAATCTACGATTTCGCAGGCGTGCAA
GGTATTGCCGACATTCTTCACTCGCAGTGAAGATCTACATGTATCTTGAT
CCGCCTGGACTGCAGTCATAACCTTTTCGCTGGATTATCCATATCTTGAT
GCTTCCACATGCCCAAATTGTTATGGAAACAGATCTCACATCGTTCAGAT
GAACGAAACGAGAAATATGAAAAGTCCCAATGCCGCAAAGACTTTGGCAC
AATTACCCGCACAACCACAAGGACCACAAATCCCATCTGTACCGTCAGCT
CCATCGTCAACGGGGACGAAGGCCATGAAGACCAAGCAATTGGATTGGAA
ACAGGCAAATCTGCTGAAAATGTGGAGCGATTCACGGGGATTGACGGACA
TACTTCTCTCGTGCAGGCAGCCTCCGACCATGACGAAGTAATCGGGGTGG
AGCTAGGCGAATGCGCGAAAAGCGAATGCGCGAAAAGCGTGGAAAGCTTT
TCTAGGAAAGGCAGAGATGCTTCCCTTGTGCAGACAACTGCAACAGGAGT
ACAGTCCAGCACGGTGTTACCGGCCTTTTTCATCTCGTTTGGTTGCGGTC
GGAGCATTATCGTCATGCTCGCATTGTACTCTGCAGCTCTTGCCGTCGCG
ACAGTAATCGCTCACGTCCAACTACACAGTGGACTCATCCTCCTGTCGCT
CCTCCCCGCCGTCTTCATGATGACCTATGCCCAACGTCTATTCGCAAGGA
GCGTACTCCGCCGAGAAATGGTTCTCACTTTCTTTCTAGCCATTCTGTGC
ATGAGTCCAGTAGTCGTGGTAGAAAATCTGTGGTACTACGTCGTGCTGAC
CAAGAGCCACTTAGATGACGCTGGCGATGTACCCCACAGTACCGGCGCCA
TTTCCTGGGCATATCGCTTCCTTTCTGCATTCGTACGAGCGTTTCTCGTC
GCAGCTTTGTTCGAGGAAGGTGCTAAATTTTTGGCCTTGCGGCGTTTACG
GTCACTGCCCCATGTAAACGACCCACGTGCCATGGTCACCTATGGCATAT
GCGCAGGTGTCGCCCTTGGAACGGTTGAAAATCTTTTTCTCTACGCCTTC
GCGTATGGCATCGACGTTACTCTCATTCGTGCTATCCTCACTGTGCCCAT
GCACGGCATGACGGGGATGCTGACCGCCTGTGCCTTGGCTGAGGACGTTT
TCCTGGTACCAGCTCCTGTTTTCCCCGCACCCGCCTCGCCCGTATACCGC
CCTTGGTACCGTATTATCGCGGCTCCCGTTTTGTTTCACGGTATGTTTGA
CTTTGTGGATTTCTTTTTTCCGGACCGACTTCAAAGCTTGTTGATCGCAG
TAGAAGCCAGTATCGTGGTGACAGGATTCGTCTATTTCCGCTGGAAATTT
TTGCGGCTGGTCAAAGCAGTGCCCGTTGAGGATGATATTCATTGTGCCCT
TAGAAAAGAAGCCGAGAGCCTCGACAGGACGGCGTTGGAGGATGTTTTTG
TAGAAGAGACAGGGGCGGTTGACGGTGTCGAGAGCACGATGAGGGAGAAA
GCTTCGGGACAGGAAGCCGAAGAACGCAACCGAGTTGGCCTGTGGGGAAG
ACTCACAGGCGAGGGTAGCACGATGGGTCCCTCCAACCGGTACGTAGGAG
CGGTGGTGGGGACAGCATGCGTGTTTTGCACCGGCATGTTACTCTTCTTG
TATTTCAGCCCGGTGTAAAAGGATGGCATGCAGCGAAAGCGGCACTGGCG
ACAGAGCCACACAGCATCATGTACTGGTGGCGCGTAAAGTTATCAGCCGG
ACAGCCATTGCTCTCCTCGCGGTTTAGGGAACAGTGGCATGTACACACAG
ATAAATAGTTTAGTTAGTAGTGCGACGGGAAAAGGCGTAAGACTATTAAA
AAAGGACGAAGTGCGTACAAATTGAATAACGTTGGGAAGGCATGACCTTG
TGGCGAGAAAGAGTTGGCTGTACAAAAAGAACTGTCGGGACGTCATTAAA
AGAAAAAGAAAGAGAGGTCGAGAGTTCACACCTGTGGACAACAAGCCAGG
CC

protein sequence of rna4786

>rna4786-protein ID=rna4786-protein|Name=rna4786|organism=Nannochloropsis gaditana|type=polypeptide|length=528bp
MDMYPRNHWDLNCNYGEIGDAQELTFTLQDILARNKAILREVNRAKDLVD
QHRFHQNNDIQTKPISARTSQERLFLARQDFMQVIESVTQRQREADLFPQ
RMVIIRSDGRNNPQQARAKGTGSADAKKPFRDLFNNDEIVQHEQLWTHLS
PFTPLKNMQGTQEICLSAFDLPASMPSPAETKKFPATPSPRRPDARMDAI
SVPHALEKQHKDSMTADSPDHSKNYNGVGVREVDGTNYPDIRNMTAEERF
TVAVNLIRLIENLSYAVASSTRAALPRSGYPAVWDGRIPSRVLKFEQRMY
QDLKSNVLQENCSSILQSRSPGGASESFVTTCCLAFLHLLRFSSRELLPL
HLLEEAVEEAKLSKHHRHVRHAAGLWMAFQDHLRFLLYQESMTPEEIRDI
FAEALLGDMSKRGKGEVLRIRRKIMLLLESIIQGLAAKKDNHPRHQVQTE
TQKETTVEKCGTSVCAGRFRGVRPMSKPLLDEKSYEFPGDTVSAGIFPNV
TSSATRHLPTCSTSHGKRNFISRLLRWK

mRNA from alignment at CM002464.1:345729..348190+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4786 ID=rna4786|Name=rna4786|organism=Nannochloropsis gaditana|type=mRNA|length=2462bp|location=Sequence derived from alignment at CM002464.1:345729..348190+ (Nannochloropsis gaditana)
TACATCGCTTTGAACATGTCATGAGAGTAATTTTTCATGCCGGTCGCCCG
GTCGCCCAGCAAAGAATGTGTCTCTTACAAGGTTTGTTGAGGTGCCACAC
AATCCACATTTTACATTCAAATAAGGCTCGACAGGGAAAACGAAGGACGC
TTAAATTTGCCGGCCAACAAAAATTGAAACAACTGCAGGCCTCTGCCATG
AGCGACTGTGATGGCAAGATGACCGCCAGCCTCGACGACGTCCAATAGCC
CACTAGAATAGACTGCGAAATCCAAGACAAAATTTGTGAGTCACGGAGAT
TCTTCTCGCTGTCTCTTTCGTGTCCTTGGAATTCTCAGAGTGACCGCAGA
TGTACTAATCTTTTTCTTATGGTCTGGGCGTCCCTCACCGCAATCGAGCC
TGACATTTCACTGTTTACATGTGTAATAAAAGTCCAATTTATCACAATTT
CTGTTTTCTGGACATTTTCCTGCTACATTTCATCCTCAACATAGCGGTGA
TTAACGGATAGCAACGAATGGACATGTACCCCAGAAATCATTGGGATCTG
AACTGTAATTATGGAGAAATAGGAGACGCTCAGGAGTTGACATTCACGCT
CCAGGACATCCTTGCCCGTAATAAAGCCATTCTTCGTGAAGTCAACCGTG
CTAAGGACCTTGTTGATCAACACCGCTTTCACCAAAACAACGATATACAA
ACCAAGCCAATTAGCGCGAGAACCAGCCAAGAGCGACTCTTCCTGGCCAG
ACAGGATTTTATGCAGGTCATCGAGAGTGTGACGCAACGGCAGAGAGAAG
CAGATCTTTTCCCCCAAAGAATGGTGATTATCCGGAGTGATGGCAGAAAC
AACCCACAGCAGGCAAGAGCCAAGGGTACGGGTTCCGCAGACGCAAAAAA
GCCCTTTCGCGACCTTTTTAACAACGATGAAATTGTGCAGCACGAACAAC
TTTGGACACATTTATCGCCCTTTACACCTCTCAAGAACATGCAAGGAACC
CAGGAGATCTGCCTCTCAGCTTTTGATTTGCCTGCGTCGATGCCCTCACC
GGCCGAGACAAAAAAGTTTCCTGCCACACCGTCACCTCGTCGTCCTGATG
CAAGGATGGATGCTATCAGCGTACCGCATGCTCTAGAAAAACAACACAAG
GACTCGATGACCGCGGACTCCCCTGATCACTCGAAGAACTACAATGGAGT
GGGGGTGCGGGAGGTAGATGGTACGAATTACCCCGATATCCGCAACATGA
CTGCCGAGGAACGCTTTACTGTAGCGGTTAATTTAATTCGACTGATCGAA
AACCTATCTTATGCGGTAGCTTCCTCGACGCGTGCGGCTCTGCCACGTTC
CGGGTACCCTGCTGTGTGGGACGGACGCATTCCCTCAAGAGTTCTGAAGT
TCGAGCAGCGTATGTACCAAGACCTGAAATCAAATGTCTTACAAGAAAAT
TGTTCCTCTATCTTGCAATCGAGGTCGCCCGGAGGAGCCTCCGAAAGCTT
CGTTACTACGTGCTGTTTGGCAtttctccatcttctccgctTTTCTTCCC
GGGAACTGCTTCCGTTGCATCTGCTCGAagaagcggtggaggaagcgaag
ctATCCAAGCACCACCGACACGTGCGACATGCAGCGGGCTTGTGGATGGC
GTTCCAAGACCATCTGCGATTTTTGCTTTACCAGGAATCAATGACCCCGG
AAGAAATTCGGGATATTTTCGCCGAGGCATTACTTGGAGACATGAGTAag
agaggcaaaggagaggTCCTCCGAATACGGCGAAAGATAATGTTGCTTTT
GGAGTCCATTATTCAAGGACTCGCGGCCAAAAAAGACAATCATCCTAGAC
ATCAAGTGCAGACTGAAACTCAAAAGGAGACGACTGTCGAGAAGTGCGGA
ACTTCAGTGTGTGCCGGTCGTTTTCGAGGGGTAAGACCGATGTCGAAACC
ACTTTTGGATGAGAAATCCTATGAATTCCCCGGGGACACCGTGTCAGCAG
GCATTTTTCCGAACGTCACCTCAAGCGCTACTCGTCACTTGCCCACATGC
TCCACTTCTCACGGCAAGAGGAATTTCATTAGTCGTTTATTGCGGTGGAA
GTAAAAATTAGAGAACGCCACAAGTGATGCTGTTAAGAACAAAAGGCGCA
TCCGAAGATGTTCGCGAAAGTTCTGTTTGAGACATTTATCAAaattcctt
cctctttcggaTACATTTGTAAGCGCGTGCGTGCTATTCGTTCCCACGAC
AGTGTACGTTGGTTACAGAAGCACGTGCCTTTTCCCACTGAGATCGTCAA
GTACAGTATCCTCCCCGACTTCCTGGTAACCATCTTGATCATCGATTTCC
AAAGCTGTAATTCTCGAAAAGACTTGTTCGACTTTCCCCTGCGATCTTAT
CTTTCCGGCCTGTATATCTTCTtaatcctcctccagcccatCCGAACACA
CGTCGCCACTTT

Coding sequence (CDS) from alignment at CM002464.1:345729..348190+

>rna4786 ID=rna4786|Name=rna4786|organism=Nannochloropsis gaditana|type=CDS|length=1587bp|location=Sequence derived from alignment at CM002464.1:345729..348190+ (Nannochloropsis gaditana)
ATGGACATGTACCCCAGAAATCATTGGGATCTGAACTGTAATTATGGAGA
AATAGGAGACGCTCAGGAGTTGACATTCACGCTCCAGGACATCCTTGCCC
GTAATAAAGCCATTCTTCGTGAAGTCAACCGTGCTAAGGACCTTGTTGAT
CAACACCGCTTTCACCAAAACAACGATATACAAACCAAGCCAATTAGCGC
GAGAACCAGCCAAGAGCGACTCTTCCTGGCCAGACAGGATTTTATGCAGG
TCATCGAGAGTGTGACGCAACGGCAGAGAGAAGCAGATCTTTTCCCCCAA
AGAATGGTGATTATCCGGAGTGATGGCAGAAACAACCCACAGCAGGCAAG
AGCCAAGGGTACGGGTTCCGCAGACGCAAAAAAGCCCTTTCGCGACCTTT
TTAACAACGATGAAATTGTGCAGCACGAACAACTTTGGACACATTTATCG
CCCTTTACACCTCTCAAGAACATGCAAGGAACCCAGGAGATCTGCCTCTC
AGCTTTTGATTTGCCTGCGTCGATGCCCTCACCGGCCGAGACAAAAAAGT
TTCCTGCCACACCGTCACCTCGTCGTCCTGATGCAAGGATGGATGCTATC
AGCGTACCGCATGCTCTAGAAAAACAACACAAGGACTCGATGACCGCGGA
CTCCCCTGATCACTCGAAGAACTACAATGGAGTGGGGGTGCGGGAGGTAG
ATGGTACGAATTACCCCGATATCCGCAACATGACTGCCGAGGAACGCTTT
ACTGTAGCGGTTAATTTAATTCGACTGATCGAAAACCTATCTTATGCGGT
AGCTTCCTCGACGCGTGCGGCTCTGCCACGTTCCGGGTACCCTGCTGTGT
GGGACGGACGCATTCCCTCAAGAGTTCTGAAGTTCGAGCAGCGTATGTAC
CAAGACCTGAAATCAAATGTCTTACAAGAAAATTGTTCCTCTATCTTGCA
ATCGAGGTCGCCCGGAGGAGCCTCCGAAAGCTTCGTTACTACGTGCTGTT
TGGCAtttctccatcttctccgctTTTCTTCCCGGGAACTGCTTCCGTTG
CATCTGCTCGAagaagcggtggaggaagcgaagctATCCAAGCACCACCG
ACACGTGCGACATGCAGCGGGCTTGTGGATGGCGTTCCAAGACCATCTGC
GATTTTTGCTTTACCAGGAATCAATGACCCCGGAAGAAATTCGGGATATT
TTCGCCGAGGCATTACTTGGAGACATGAGTAagagaggcaaaggagaggT
CCTCCGAATACGGCGAAAGATAATGTTGCTTTTGGAGTCCATTATTCAAG
GACTCGCGGCCAAAAAAGACAATCATCCTAGACATCAAGTGCAGACTGAA
ACTCAAAAGGAGACGACTGTCGAGAAGTGCGGAACTTCAGTGTGTGCCGG
TCGTTTTCGAGGGGTAAGACCGATGTCGAAACCACTTTTGGATGAGAAAT
CCTATGAATTCCCCGGGGACACCGTGTCAGCAGGCATTTTTCCGAACGTC
ACCTCAAGCGCTACTCGTCACTTGCCCACATGCTCCACTTCTCACGGCAA
GAGGAATTTCATTAGTCGTTTATTGCGGTGGAAGTAA

Synonyms

Publications