rna4783, rna4783 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4783
Unique Name	rna4783
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	861
Alignment location	CM002464.1:338342..341118 +

Link to JBrowse

Properties


Property Name	Value
Product	sulfate transporter
Orig transcript id	gnl\|cribi\|Naga_100048g21.10284.mrna
Orig protein id	gnl\|cribi\|Naga_100048g21.10284
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:338342..341118 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100048g21	gene4620	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4783	rna4783-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25912.1	cds4771	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:338342..341118+
coding sequence from alignment at CM002464.1:338342..341118+

mRNA sequence

>rna4783 ID=rna4783|Name=rna4783|organism=Nannochloropsis gaditana|type=mRNA|length=861bp
ATGATGTTGCAGCGAGGAATCTTGGTGGTAATGGCATCGACTCTGCTGCT
CCAATCCTCCCTGGGATTCTTACGCCCGTCTACTGCCCTCCCAGCGGTCC
GTGCCGGGACGGCAAGCCTCCGATTGAGCAATTCTCGTCGATTCTTGGCT
ATGGTCGGCACTGAGACGAAGGGTGCTGCGGACACTGAAGAGTTTCGTAT
CTTTTTCAAGAAAGATGGCAACACGATTTCTCCCTGGCACGACATTCCCC
TCAAGGCCGATCCTCAGACGTTTAACTTCATCACCGAGATCCCGAAATTC
ACCAAGGCCAAGATGGAGGTGGCGACCAAGGAGGAACTCAACCCGATCTC
CCAGGACATGAAGAAAGGAAAACTCCGCTTCTACCATGGCCCCATTTTCT
GGAATTACGGACTCCTGCCTCAGACCTGGGAGGATCCCAATCACACTCAT
CCGGAGCTGAAGGTGCAGGGAGACAACGACCCCGTGGACGTGGTCGAGAT
CGGGAGCACAGTGCTGAGCATGGGGGCCGTGACGCCCGTGAAGCCCCTCG
GAGTCCTCGCCATGATCGATGACGGGGAGCTCGACTGGAAAATCATTGCG
ATCGCCGCCTCCGACCCCATGGCCGGAGAGCTCAACGACATCGCCGACGT
GGAGGCCAAGCTCCCTGGGGTGGTTTCTGGGATCAGAGAATGGTTCCGTT
GGTACAAAACGCCCGATGGCAAGCCCGTGAACGAGTTTGGATTCGGAGAG
AAGGCGCTGGCCAAGGCGGATGCTTTGAAGGTAATTGATGAGACCCATGG
AGCCTGGAAGAGTCTTATGAGCGGCCAGACAGACGCGGGCAAGCTTTGGA
AGAAAGCCTGA

protein sequence of rna4783

>rna4783-protein ID=rna4783-protein|Name=rna4783|organism=Nannochloropsis gaditana|type=polypeptide|length=876bp
MTQRNGKTPPVDHTDMHAGSGAAPGSMPLPTTSSHAPPAGGSASPPRLGD
RRGPRDLSSYVEPGVRDGMLEEKKKLNRRREPMLYFPTVPAWNWMRNYHV
RRDLFWDLQAGLVVGILLIPQGMAYAVLANLSPIYGLYSAIAPNIVYSFF
GPSRESAVGAMALVSIMVGNIISGQTSSLRSSEGDHTQQAPLEERVNVAV
KLAFVTGLMQIGLGVLKMGEIATYVSHPVMQGFCSGGEILIAISQLKYLF
GIKIPAFPYAYQTLEYLFQNIQDTEPWTLLLGLVTFFLLYALSRWRRAAR
AKLERLRSAALSSDSTTPHAHVWTKKMLLLSNFGPFVAIVATAFVSYGMS
RQGVAPAIIGEVPHGLHTYPSYAITLTEFRDLAGASFLLAVISFMLTYSV
SKKYAGLNNYVVEPNQELVALGLADFVGSFFGAFPVAGGFARTAVAVEAN
QKTQASALVAVSIVLLAVNFLTGSFHWIPLCTLAAIVQVAICGVVDFRPF
LYAFRASKSEFAVMFTTFAVTLGLGIDKGIIVGVALSIVALVRKTSHPRL
KVLGALPGRRHVFRDVTRYTNAVQAPGICIVRIDESLNFASCASIKEQIL
SIANDPNVVLPKAASSHHHAFGLGGGQGHVEGKGSGEHGLPAPFRSGSPL
LSVVRTFKVGGVAGGAEGGAVELTAKEDAVEEGHVRSQAGDNQGAQDDEG
TRKKLPRRRGGGTEGGADGALVVSQDLQEEMGEEDLEVSRVLTAAKVSAR
PKHIVVDFSGVNHIDLSGIKMLDEVEEALQKGLPPQILYVVNVKSTVRDR
LKKSPLWDRVGGELCFLSLPALLDHLVGDRYWAGKPRHGCTVENTERQSG
SNTPGGQGGDDASETAIWDGYTDWVI

mRNA from alignment at CM002464.1:338342..341118+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4783 ID=rna4783|Name=rna4783|organism=Nannochloropsis gaditana|type=mRNA|length=2777bp|location=Sequence derived from alignment at CM002464.1:338342..341118+ (Nannochloropsis gaditana)
ATGACGCAAAGAAACGGCAAGACTCCCCCCGTGGACCATACCGACATGCA
TGCAGGGTCAGGAGCTGCACCGGGTTCCATGCCTCTGCCGACAACGTCCT
CACATGCCCCTCCTGCGGGAGGGTCTGCgtcccccccacgcctcgGCGAC
AGGCGGGGCCCGCGGGATCTCTCCTCATATGTAGAGCCAGGCGTACGCGA
CGGGATGctagaagaaaaaaaaaagcttAACAGACGGCGAGAGCCCATGC
TATATTTTCCAACTGTACCAGCGTGGAATTGGATGCGAAATTATCACGTA
CGCCGGGACCTTTTCTGGGATTTGCAGGTAAGCCAACTCCTTATGGTATG
CATGTACTTAAAATGCACGGGACCTAAATAAGCGAAGGGTAGTTCCTCGG
TGAGCCACCGCAGTAACCTAGTTTAGTTGGCCGCAGTCAAGGTGCTAATT
CTTTTTTCGCTTCGCCCCATCAGGCAGGCCTCGTTGTCGggatcctcctc
atccctcaGGGTATGGCCTATGCCGTCCTGGCCAACCTCTCTCCCATCTA
CGGGCTCTACAGTGCGATTGCACCCAACATTGTCTACAGCTTTTTTGGAC
CGTCCCGAGAAAGTGCTGTAGGGGCGATGGCGCTGGTCAGCATCATGGTC
GGCAACATTATTTCTGGACAAACGTCCTCCCTTCGGAGCTCGGAGGGTGA
TCACACGCAGCAAGCACCGTTGGAGGAGCGCGTCAATGTAGCCGTGAAAC
TCGCCTTTGTGACAGGACTGATGCAAATAGGCCTGGGTGTGTTGAAAATG
GGGGAAATTGCCACTTACGTGTCGCACCCGGTCATGCAAGGGTTCTGCTC
AGGGGGCGAGATTCTCATCGCCATTTCCCAGCTCAAATACCTCTTCGGCA
TCAAgatccccgccttcccgtaCGCTTATCAAACGCTCGAGTACTTGTTC
CAAAATATCCAAGATACGGAGCCATGGACCTTGCTGCTGGGCCTggtcac
cttcttcctcttgtacGCCCTCTCCCGTTGGCGGAGGGCCGCCCGCGCTA
AGCTTGAGCGCCTGCGCTCTGCGGCTCTTTCCTCGGATTCCACGACCCCG
CATGCCCACGTCTGGACAAAAAAAATGCTGCTCCTGTCCAACTTCGGTCC
CTTCGTAGCCATTGTAGCGACGGCTTTCGTCTCCTACGGGATGTCCCGGC
AGGGTGTCGCGCCCGCCATCATAGGCGAGGTTCCCCACGGCCTGCACACG
TACCCGTCCTACGCGATCACGCTCACGGAGTTTCGCGATTTGGCCGGTGC
GTCCTTTCTTCTGGCGGTGATCTCGTTCATGCTCACCTACAGCGTGTCCA
AAAAATACGCGGGTTTGAACAACTACGTGGTGGAGCCGAACCAAGAGCTT
GTGGCGTTAGGGCTGGCCGATTTCGTCGGGAGCTTTTTTGGGGCTTTTCC
TGTCGCGGGCGGTTTCGCGCGCACGGCCGTAGCTGTGGAGGCGAATCAGA
AGACACAGGCCTCCGCGTTGGTGGCAGTCAGCATTGTCTTGCTCGCGGTC
AATTTCTTGACCGGGAGCTTCCATTGGATTCCCCTGTGCACCCTAGCGGC
CATCGTACAAGTCGCCATTTGCGGCGTCGTGGACTTTCGGCCCTTCCTCT
ACGCCTTCCGGGCCTCCAAAAGCGAGTTCGCCGTCATGTTTACCACCTTT
GCCGTCACCTTAGGCCTCGGCATCGACAAGGGGATCATCGTCGGCGTGGC
TCTCAGCATCGTGGCCCTGGTACGCAAAACCTCCCACCCGCGCTTGAAGG
TACTGGGTGCCCTTCCAGGCCGCCGGCACGTCTTTCGCGACGTCACGCGC
TACACCAACGCCGTGCAAGCGCCTGGGATTTGCATCGTTCGGATCGATGA
AAGCCTCAACTTTGCCAGCTGTGCGAGCATCAAGGAGCAAATTTTGAGCA
TAGCCAACGATCCCAACGTCGTGTTGCCCAAAGCTGCTTCGTCGCACCAT
CATGCTTTCGGActtggaggcggacaagggcatgtggaagggaagggctc
CGGAGAGCATGGCCTCCCGGCCCCTTTCCGATCGGGcagccctctcctct
ccgtgGTCCGGACGTTCAAGGTAGGCGGTGTtgctggaggggcggagggt
ggagcgGTGGAGTtgacggccaaggaggatgcGGTCGAAGAAGGCCACGT
TCGTTCGCAGGCGGGAGACAACCAGGGTGCGCAGGATGATGAAGGGACCA
GGAAAAAGTTGCCGAGAAGGCGCGGCGGgggaacagagggaggagcggac
gGAGCACTGGTAGTATCGCAAGACTTGCaagaggaaatgggggaggagga
tctggaggTTTCTCGAGTGCTCACAGCGGCTAAAGTATCGGCGCGGCCCA
AGCACATTGTCGTGGATTTCAGCGGCGTAAACCACATCGATCTCTCAGGG
ATCAAGATGCTAGACGAGGTTGAGGAGGCCTTGCAAAAGGGCCTGCCCCC
GCAGATCCTCTACGTTGTGAATGTTAAGAGCACAGTCAGGGACCGGCTGA
AAAAGTCCCCTTTGTGGGATCGTGTAGGGGGCGaactctgcttcctctcg
ctGCCCGCCTTGTTAGACCATTTAGTTGGAGACCGGTACTGGGCAGGTAA
ACCCAGACATGGATGCACAGTTGAGAACACAGAGCGTCAATCTGGCTCGA
ACACACcaggaggacagggtgggGATGATGCATCTGAGACGGCGATATGG
GACGGATACACTGATTGGGTGATCTGA

Coding sequence (CDS) from alignment at CM002464.1:338342..341118+

>rna4783 ID=rna4783|Name=rna4783|organism=Nannochloropsis gaditana|type=CDS|length=5262bp|location=Sequence derived from alignment at CM002464.1:338342..341118+ (Nannochloropsis gaditana)
ATGACGCAAAGAAACGGCAAGACTCCCCCCGTGGACCATACCGACATGCA
TGCAGGGTCAGGAGCTGCACCGGGTTCCATGCCTCTGCCGACAACGTCCT
CACATGCCCCTCCTGCGGGAGGGTCTGCgtcccccccacgcctcgGCGAC
AGGCGGGGCCCGCGGGATCTCTCCTCATATGTAGAGCCAGGCGTACGCGA
CGGGATGctagaagaaaaaaaaaagcttAACAGACGGCGAGAGCCCATGC
TATATTTTCCAACTGTACCAGCGTGGAATTGGATGCGAAATTATCACGTA
CGCCGGGACCTTTTCTGGGATTTGCAGGCAGGCCTCGTTGTCGggatcct
cctcatccctcaGGGTATGGCCTATGCCGTCCTGGCCAACCTCTCTCCCA
TCTACGGGCTCTACAGTGCGATTGCACCCAACATTGTCTACAGCTTTTTT
GGACCGTCCCGAGAAAGTGCTGTAGGGGCGATGGCGCTGGTCAGCATCAT
GGTCGGCAACATTATTTCTGGACAAACGTCCTCCCTTCGGAGCTCGGAGG
GTGATCACACGCAGCAAGCACCGTTGGAGGAGCGCGTCAATGTAGCCGTG
AAACTCGCCTTTGTGACAGGACTGATGCAAATAGGCCTGGGTGTGTTGAA
AATGGGGGAAATTGCCACTTACGTGTCGCACCCGGTCATGCAAGGGTTCT
GCTCAGGGGGCGAGATTCTCATCGCCATTTCCCAGCTCAAATACCTCTTC
GGCATCAAgatccccgccttcccgtaCGCTTATCAAACGCTCGAGTACTT
GTTCCAAAATATCCAAGATACGGAGCCATGGACCTTGCTGCTGGGCCTgg
tcaccttcttcctcttgtacGCCCTCTCCCGTTGGCGGAGGGCCGCCCGC
GCTAAGCTTGAGCGCCTGCGCTCTGCGGCTCTTTCCTCGGATTCCACGAC
CCCGCATGCCCACGTCTGGACAAAAAAAATGCTGCTCCTGTCCAACTTCG
GTCCCTTCGTAGCCATTGTAGCGACGGCTTTCGTCTCCTACGGGATGTCC
CGGCAGGGTGTCGCGCCCGCCATCATAGGCGAGGTTCCCCACGGCCTGCA
CACGTACCCGTCCTACGCGATCACGCTCACGGAGTTTCGCGATTTGGCCG
GTGCGTCCTTTCTTCTGGCGGTGATCTCGTTCATGCTCACCTACAGCGTG
TCCAAAAAATACGCGGGTTTGAACAACTACGTGGTGGAGCCGAACCAAGA
GCTTGTGGCGTTAGGGCTGGCCGATTTCGTCGGGAGCTTTTTTGGGGCTT
TTCCTGTCGCGGGCGGTTTCGCGCGCACGGCCGTAGCTGTGGAGGCGAAT
CAGAAGACACAGGCCTCCGCGTTGGTGGCAGTCAGCATTGTCTTGCTCGC
GGTCAATTTCTTGACCGGGAGCTTCCATTGGATTCCCCTGTGCACCCTAG
CGGCCATCGTACAAGTCGCCATTTGCGGCGTCGTGGACTTTCGGCCCTTC
CTCTACGCCTTCCGGGCCTCCAAAAGCGAGTTCGCCGTCATGTTTACCAC
CTTTGCCGTCACCTTAGGCCTCGGCATCGACAAGGGGATCATCGTCGGCG
TGGCTCTCAGCATCGTGGCCCTGGTACGCAAAACCTCCCACCCGCGCTTG
AAGGTACTGGGTGCCCTTCCAGGCCGCCGGCACGTCTTTCGCGACGTCAC
GCGCTACACCAACGCCGTGCAAGCGCCTGGGATTTGCATCGTTCGGATCG
ATGAAAGCCTCAACTTTGCCAGCTGTGCGAGCATCAAGGAGCAAATTTTG
AGCATAGCCAACGATCCCAACGTCGTGTTGCCCAAAGCTGCTTCGTCGCA
CCATCATGCTTTCGGActtggaggcggacaagggcatgtggaagggaagg
gctcCGGAGAGCATGGCCTCCCGGCCCCTTTCCGATCGGGcagccctctc
ctctccgtgGTCCGGACGTTCAAGGTAGGCGGTGTtgctggaggggcgga
gggtggagcgGTGGAGTtgacggccaaggaggatgcGGTCGAAGAAGGCC
ACGTTCGTTCGCAGGCGGGAGACAACCAGGGTGCGCAGGATGATGAAGGG
ACCAGGAAAAAGTTGCCGAGAAGGCGCGGCGGgggaacagagggaggagc
ggacgGAGCACTGGTAGTATCGCAAGACTTGCaagaggaaatgggggagg
aggatctggaggTTTCTCGAGTGCTCACAGCGGCTAAAGTATCGGCGCGG
CCCAAGCACATTGTCGTGGATTTCAGCGGCGTAAACCACATCGATCTCTC
AGGGATCAAGATGCTAGACGAGGTTGAGGAGGCCTTGCAAAAGGGCCTGC
CCCCGCAGATCCTCTACGTTGTGAATGTTAAGAGCACAGTCAGGGACCGG
CTGAAAAAGTCCCCTTTGTGGGATCGTGTAGGGGGCGaactctgcttcct
ctcgctGCCCGCCTTGTTAGACCATTTAGTTGGAGACCGGTACTGGGCAG
GTAAACCCAGACATGGATGCACAGTTGAGAACACAGAGCGTCAATCTGGC
TCGAACACACcaggaggacagggtgggGATGATGCATCTGAGACGGCGAT
ATGGGACGGATACACTGATTGGGTGATCTGAATGACGCAAAGAAACGGCA
AGACTCCCCCCGTGGACCATACCGACATGCATGCAGGGTCAGGAGCTGCA
CCGGGTTCCATGCCTCTGCCGACAACGTCCTCACATGCCCCTCCTGCGGG
AGGGTCTGCgtcccccccacgcctcgGCGACAGGCGGGGCCCGCGGGATC
TCTCCTCATATGTAGAGCCAGGCGTACGCGACGGGATGctagaagaaaaa
aaaaagcttAACAGACGGCGAGAGCCCATGCTATATTTTCCAACTGTACC
AGCGTGGAATTGGATGCGAAATTATCACGTACGCCGGGACCTTTTCTGGG
ATTTGCAGGCAGGCCTCGTTGTCGggatcctcctcatccctcaGGGTATG
GCCTATGCCGTCCTGGCCAACCTCTCTCCCATCTACGGGCTCTACAGTGC
GATTGCACCCAACATTGTCTACAGCTTTTTTGGACCGTCCCGAGAAAGTG
CTGTAGGGGCGATGGCGCTGGTCAGCATCATGGTCGGCAACATTATTTCT
GGACAAACGTCCTCCCTTCGGAGCTCGGAGGGTGATCACACGCAGCAAGC
ACCGTTGGAGGAGCGCGTCAATGTAGCCGTGAAACTCGCCTTTGTGACAG
GACTGATGCAAATAGGCCTGGGTGTGTTGAAAATGGGGGAAATTGCCACT
TACGTGTCGCACCCGGTCATGCAAGGGTTCTGCTCAGGGGGCGAGATTCT
CATCGCCATTTCCCAGCTCAAATACCTCTTCGGCATCAAgatccccgcct
tcccgtaCGCTTATCAAACGCTCGAGTACTTGTTCCAAAATATCCAAGAT
ACGGAGCCATGGACCTTGCTGCTGGGCCTggtcaccttcttcctcttgta
cGCCCTCTCCCGTTGGCGGAGGGCCGCCCGCGCTAAGCTTGAGCGCCTGC
GCTCTGCGGCTCTTTCCTCGGATTCCACGACCCCGCATGCCCACGTCTGG
ACAAAAAAAATGCTGCTCCTGTCCAACTTCGGTCCCTTCGTAGCCATTGT
AGCGACGGCTTTCGTCTCCTACGGGATGTCCCGGCAGGGTGTCGCGCCCG
CCATCATAGGCGAGGTTCCCCACGGCCTGCACACGTACCCGTCCTACGCG
ATCACGCTCACGGAGTTTCGCGATTTGGCCGGTGCGTCCTTTCTTCTGGC
GGTGATCTCGTTCATGCTCACCTACAGCGTGTCCAAAAAATACGCGGGTT
TGAACAACTACGTGGTGGAGCCGAACCAAGAGCTTGTGGCGTTAGGGCTG
GCCGATTTCGTCGGGAGCTTTTTTGGGGCTTTTCCTGTCGCGGGCGGTTT
CGCGCGCACGGCCGTAGCTGTGGAGGCGAATCAGAAGACACAGGCCTCCG
CGTTGGTGGCAGTCAGCATTGTCTTGCTCGCGGTCAATTTCTTGACCGGG
AGCTTCCATTGGATTCCCCTGTGCACCCTAGCGGCCATCGTACAAGTCGC
CATTTGCGGCGTCGTGGACTTTCGGCCCTTCCTCTACGCCTTCCGGGCCT
CCAAAAGCGAGTTCGCCGTCATGTTTACCACCTTTGCCGTCACCTTAGGC
CTCGGCATCGACAAGGGGATCATCGTCGGCGTGGCTCTCAGCATCGTGGC
CCTGGTACGCAAAACCTCCCACCCGCGCTTGAAGGTACTGGGTGCCCTTC
CAGGCCGCCGGCACGTCTTTCGCGACGTCACGCGCTACACCAACGCCGTG
CAAGCGCCTGGGATTTGCATCGTTCGGATCGATGAAAGCCTCAACTTTGC
CAGCTGTGCGAGCATCAAGGAGCAAATTTTGAGCATAGCCAACGATCCCA
ACGTCGTGTTGCCCAAAGCTGCTTCGTCGCACCATCATGCTTTCGGActt
ggaggcggacaagggcatgtggaagggaagggctcCGGAGAGCATGGCCT
CCCGGCCCCTTTCCGATCGGGcagccctctcctctccgtgGTCCGGACGT
TCAAGGTAGGCGGTGTtgctggaggggcggagggtggagcgGTGGAGTtg
acggccaaggaggatgcGGTCGAAGAAGGCCACGTTCGTTCGCAGGCGGG
AGACAACCAGGGTGCGCAGGATGATGAAGGGACCAGGAAAAAGTTGCCGA
GAAGGCGCGGCGGgggaacagagggaggagcggacgGAGCACTGGTAGTA
TCGCAAGACTTGCaagaggaaatgggggaggaggatctggaggTTTCTCG
AGTGCTCACAGCGGCTAAAGTATCGGCGCGGCCCAAGCACATTGTCGTGG
ATTTCAGCGGCGTAAACCACATCGATCTCTCAGGGATCAAGATGCTAGAC
GAGGTTGAGGAGGCCTTGCAAAAGGGCCTGCCCCCGCAGATCCTCTACGT
TGTGAATGTTAAGAGCACAGTCAGGGACCGGCTGAAAAAGTCCCCTTTGT
GGGATCGTGTAGGGGGCGaactctgcttcctctcgctGCCCGCCTTGTTA
GACCATTTAGTTGGAGACCGGTACTGGGCAGGTAAACCCAGACATGGATG
CACAGTTGAGAACACAGAGCGTCAATCTGGCTCGAACACACcaggaggac
agggtgggGATGATGCATCTGAGACGGCGATATGGGACGGATACACTGAT
TGGGTGATCTGA

Synonyms

Publications