rna4782, rna4782 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4782
Unique Name	rna4782
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	939
Alignment location	CM002464.1:335882..337616 +

Link to JBrowse

Properties


Property Name	Value
Product	inorganic pyrophosphatase
Orig transcript id	gnl\|cribi\|Naga_100048g20.10280.mrna
Orig protein id	gnl\|cribi\|Naga_100048g20.10280
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:335882..337616 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100048g20	gene4619	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4782	rna4782-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25908.1	cds4770	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:335882..337616+
coding sequence from alignment at CM002464.1:335882..337616+

mRNA sequence

>rna4782 ID=rna4782|Name=rna4782|organism=Nannochloropsis gaditana|type=mRNA|length=939bp
ATGCCGACGTCGTCTGACGGGACAGTTACTCAAGCACCTTCAACTTCAAA
TGGGAGTACAAAGAAGAGGCGGGGAGGGAAACGCAAGAAGAACACAGGGA
GACCAGACGATAATCCCAAGCATCCCGCTCCCGGAGACCCGTCATCAGTG
GGAAGTGGAAGCAATCGCAACCGAATATGCAACGGCAACAGAAGGTTGCT
CAGTTATGCTCTCTCACCAGCATATTGGTTCGCGTTAACGGTATCAATGG
TGGCATTTATGGTTCTGAGACGAGGTAGTACGAGAATTTCCGGCTTCAGT
CAAGTTACACCCGGAGCAGCGGGGAGCAGGGATTTCAAAGCAAAAGTCAG
CCCAAACACCGCAGCAGAGGAAATCAGTCTAGATTCTTCGTCAAACACAA
GAGATGAAGAATGTATAAGCACGAAGCCCAACTCATTTTTTTCATGGTCT
TTTCCAAAACTTGAGGCGATGATGACACAATTTATTGAGTCACCCATTGT
GTTCCCCGAAGCACCAGTAACACGCTTCAGGCGAAGGGCTTTACAAGAAA
TGCAGCTAAATGACGAGCCATTGCAAGACAACCCTCCACGCTACGTACCC
CCAGGGTATGCCTTTCCTTCTCAGGTGCTGCATTCCGACATACACCTGAG
AGCAGAACGGGAACGGCATAGGGCAGTCATGCGCGCCGTCCAACCCATTA
TGTTAAATGGTCGAGAACAAGATTGTGTAAGTCCTCGTTGCCTCAGAGAT
GGCACCTACCCTGCTTTCCGAAAACTTGAACGGAAAATGTTGAAAATGTT
AAGCCCTGAAAGTTTATGCGTGTTCATCTTAGATTGGGGAAGAGGCGAAA
TAGAGTTTGAGAGAGAAGCATACCTTCAAGCAAGACCTCAGATGGCCTTG
TATCCCAACGTTACAAGCCCGCAGGTAATCGAAAAATAA

protein sequence of rna4782

>rna4782-protein ID=rna4782-protein|Name=rna4782|organism=Nannochloropsis gaditana|type=polypeptide|length=286bp
MMLQRGILVVMASTLLLQSSLGFLRPSTALPAVRAGTASLRLSNSRRFLA
MVGTETKGAADTEEFRIFFKKDGNTISPWHDIPLKADPQTFNFITEIPKF
TKAKMEVATKEELNPISQDMKKGKLRFYHGPIFWNYGLLPQTWEDPNHTH
PELKVQGDNDPVDVVEIGSTVLSMGAVTPVKPLGVLAMIDDGELDWKIIA
IAASDPMAGELNDIADVEAKLPGVVSGIREWFRWYKTPDGKPVNEFGFGE
KALAKADALKVIDETHGAWKSLMSGQTDAGKLWKKA

mRNA from alignment at CM002464.1:335882..337616+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4782 ID=rna4782|Name=rna4782|organism=Nannochloropsis gaditana|type=mRNA|length=1735bp|location=Sequence derived from alignment at CM002464.1:335882..337616+ (Nannochloropsis gaditana)
ATGATGTTGCAGCGAGGAATCTTGGTGGTAATGGCATCGACTCTGCTGCT
CCAATCCTCCCTGGGATTCTTACGCCCGTCTACTGCCCTCCCAGCGGTCC
GTGCCGGGACGGCAAGCCTCCGATTGAGCAATTCTCGTCGATTCTTGGCT
ATGGTCGGCACTGAGACGAAGGGTGCTGCGGACACTGAAGAGTTTCGTAT
CTTTTTCAAGGTATGAGTGTGAGGAGCTGccgtcaagaaggagagcaatT
TCCGATAGGAAGGTCCTAGTGCGCACCATATGGGGTACGCCACATACTGA
TACAATCCTCATaaaaaaaaatcaatgaTGGGGTGACAATCGAAAGTAAC
ACTTACGGTTTGGCCTGTTTTACATATTTTACCTCTACACCTGACACGAG
CAGAAAGATGGCAACACGATTTCTCCCTGGCACGACATTCCCCTCAAGGC
CGATCCTCAGACGTTTAACTTCATCACCGAGATCCCGAAATTGTAAGTCA
GATGGATAAAAAGTCGTTGCGAGTAGTAAAAATGTGATGTACGCACCCCT
AATGGCAATTTCGTCAGAATTATGGTTGCAGGGCGCGATTTCGAGCTCCC
TTAAAAAGTCTGAAATGGAGCTGCATACCGTAGCCTTTCAAACCCTTTCT
CTCATTCCATTTATACTTTGGCTGCAATATCTGTCACCTTTGGAGCAAGC
TCGAACCCTTCCTTGGGCCTTGCAACGTATGAAGTCtgactttccccctc
cctcgtttttcGTGAAGCACCAAGGCcaagatggaggtggcgaccAAGGA
GGAACTCAACCCGATCTCCCAGGAcatgaagaaaggaaaacTCCGGTGAG
TGGGCGCCTGGATCACCCAGGAATCTCAAGTGCGCCCCCGAGATCCTGTA
GttcatccctcctcgacgCTAGCGATTCCTGCAAAAAGCCCTCGGTGTCT
CACCAACACATGTTTCTTACcatccccaccctccttgaAACCCACCactc
ttcctcgcccgtcctCTTACCCCTTTGGCAACAGCTTCTACCATGGCCCC
ATTTTCTGGAATTACGGACTCCTGCCTCAGACCTGGGAGGATCCCAATCA
CACTCATCCGGAGGTACGTCACAATCCTTCTTTCTGCTGCGCGcttctct
tttcttgttTTCGCATGTTTTAACTGGCACCATCGGCGCTgactcttctc
ctcttccagctgaAGGTGCAGGGAGACAACGACCCCGTGGACGTGGTCGA
GATCGGGAGCACAGTGCTGAGCATGGGGGCCGTGACGCCCGTGAAGCCCC
TCGGAGTCCTCGCCATGATCGATGACGGGGAGCTCGACTGGAAAATCATT
GCGATCGCCGCCTCCGACCCCATGGCCGGAGAGCTCAACGACATCGCCGA
CGTGGAGGCCAAGCTCCCTGGGGTGGTTTCTGGGATCAGAGAATGGTTCC
GTTGGTACAAAACGCCCGATGGCAAGCCCGTGAACGAGTTTGGATTCgga
gagaaggcgctggccaaggcggaTGCTTTGAAGGTAGGGGTGCATGGAGG
GGCAAATCTCAACACGCTGAGGCTTACTTGATAAAGTACTTCATTCTACT
TGAAGCATGCGTTGTGTTGTCTGTTTTGACACCTCTTCTCACATGACACG
GCAGGTAATTGATGAGACCCATGGAGCCTGGAAGAGTCTTATGAGCGGCC
AGACAGACGCGGGCAAGCTTTGGAAGAAAGCCTGA

Coding sequence (CDS) from alignment at CM002464.1:335882..337616+

>rna4782 ID=rna4782|Name=rna4782|organism=Nannochloropsis gaditana|type=CDS|length=5166bp|location=Sequence derived from alignment at CM002464.1:335882..337616+ (Nannochloropsis gaditana)
ATGATGTTGCAGCGAGGAATCTTGGTGGTAATGGCATCGACTCTGCTGCT
CCAATCCTCCCTGGGATTCTTACGCCCGTCTACTGCCCTCCCAGCGGTCC
GTGCCGGGACGGCAAGCCTCCGATTGAGCAATTCTCGTCGATTCTTGGCT
ATGGTCGGCACTGAGACGAAGGGTGCTGCGGACACTGAAGAGTTTCGTAT
CTTTTTCAAGAAAGATGGCAACACGATTTCTCCCTGGCACGACATTCCCC
TCAAGGCCGATCCTCAGACGTTTAACTTCATCACCGAGATCCCGAAATTC
ACCAAGGCcaagatggaggtggcgaccAAGGAGGAACTCAACCCGATCTC
CCAGGAcatgaagaaaggaaaacTCCGCTTCTACCATGGCCCCATTTTCT
GGAATTACGGACTCCTGCCTCAGACCTGGGAGGATCCCAATCACACTCAT
CCGGAGctgaAGGTGCAGGGAGACAACGACCCCGTGGACGTGGTCGAGAT
CGGGAGCACAGTGCTGAGCATGGGGGCCGTGACGCCCGTGAAGCCCCTCG
GAGTCCTCGCCATGATCGATGACGGGGAGCTCGACTGGAAAATCATTGCG
ATCGCCGCCTCCGACCCCATGGCCGGAGAGCTCAACGACATCGCCGACGT
GGAGGCCAAGCTCCCTGGGGTGGTTTCTGGGATCAGAGAATGGTTCCGTT
GGTACAAAACGCCCGATGGCAAGCCCGTGAACGAGTTTGGATTCggagag
aaggcgctggccaaggcggaTGCTTTGAAGGTAATTGATGAGACCCATGG
AGCCTGGAAGAGTCTTATGAGCGGCCAGACAGACGCGGGCAAGCTTTGGA
AGAAAGCCTGAATGATGTTGCAGCGAGGAATCTTGGTGGTAATGGCATCG
ACTCTGCTGCTCCAATCCTCCCTGGGATTCTTACGCCCGTCTACTGCCCT
CCCAGCGGTCCGTGCCGGGACGGCAAGCCTCCGATTGAGCAATTCTCGTC
GATTCTTGGCTATGGTCGGCACTGAGACGAAGGGTGCTGCGGACACTGAA
GAGTTTCGTATCTTTTTCAAGAAAGATGGCAACACGATTTCTCCCTGGCA
CGACATTCCCCTCAAGGCCGATCCTCAGACGTTTAACTTCATCACCGAGA
TCCCGAAATTCACCAAGGCcaagatggaggtggcgaccAAGGAGGAACTC
AACCCGATCTCCCAGGAcatgaagaaaggaaaacTCCGCTTCTACCATGG
CCCCATTTTCTGGAATTACGGACTCCTGCCTCAGACCTGGGAGGATCCCA
ATCACACTCATCCGGAGctgaAGGTGCAGGGAGACAACGACCCCGTGGAC
GTGGTCGAGATCGGGAGCACAGTGCTGAGCATGGGGGCCGTGACGCCCGT
GAAGCCCCTCGGAGTCCTCGCCATGATCGATGACGGGGAGCTCGACTGGA
AAATCATTGCGATCGCCGCCTCCGACCCCATGGCCGGAGAGCTCAACGAC
ATCGCCGACGTGGAGGCCAAGCTCCCTGGGGTGGTTTCTGGGATCAGAGA
ATGGTTCCGTTGGTACAAAACGCCCGATGGCAAGCCCGTGAACGAGTTTG
GATTCggagagaaggcgctggccaaggcggaTGCTTTGAAGGTAATTGAT
GAGACCCATGGAGCCTGGAAGAGTCTTATGAGCGGCCAGACAGACGCGGG
CAAGCTTTGGAAGAAAGCCTGAATGATGTTGCAGCGAGGAATCTTGGTGG
TAATGGCATCGACTCTGCTGCTCCAATCCTCCCTGGGATTCTTACGCCCG
TCTACTGCCCTCCCAGCGGTCCGTGCCGGGACGGCAAGCCTCCGATTGAG
CAATTCTCGTCGATTCTTGGCTATGGTCGGCACTGAGACGAAGGGTGCTG
CGGACACTGAAGAGTTTCGTATCTTTTTCAAGAAAGATGGCAACACGATT
TCTCCCTGGCACGACATTCCCCTCAAGGCCGATCCTCAGACGTTTAACTT
CATCACCGAGATCCCGAAATTCACCAAGGCcaagatggaggtggcgaccA
AGGAGGAACTCAACCCGATCTCCCAGGAcatgaagaaaggaaaacTCCGC
TTCTACCATGGCCCCATTTTCTGGAATTACGGACTCCTGCCTCAGACCTG
GGAGGATCCCAATCACACTCATCCGGAGctgaAGGTGCAGGGAGACAACG
ACCCCGTGGACGTGGTCGAGATCGGGAGCACAGTGCTGAGCATGGGGGCC
GTGACGCCCGTGAAGCCCCTCGGAGTCCTCGCCATGATCGATGACGGGGA
GCTCGACTGGAAAATCATTGCGATCGCCGCCTCCGACCCCATGGCCGGAG
AGCTCAACGACATCGCCGACGTGGAGGCCAAGCTCCCTGGGGTGGTTTCT
GGGATCAGAGAATGGTTCCGTTGGTACAAAACGCCCGATGGCAAGCCCGT
GAACGAGTTTGGATTCggagagaaggcgctggccaaggcggaTGCTTTGA
AGGTAATTGATGAGACCCATGGAGCCTGGAAGAGTCTTATGAGCGGCCAG
ACAGACGCGGGCAAGCTTTGGAAGAAAGCCTGAATGATGTTGCAGCGAGG
AATCTTGGTGGTAATGGCATCGACTCTGCTGCTCCAATCCTCCCTGGGAT
TCTTACGCCCGTCTACTGCCCTCCCAGCGGTCCGTGCCGGGACGGCAAGC
CTCCGATTGAGCAATTCTCGTCGATTCTTGGCTATGGTCGGCACTGAGAC
GAAGGGTGCTGCGGACACTGAAGAGTTTCGTATCTTTTTCAAGAAAGATG
GCAACACGATTTCTCCCTGGCACGACATTCCCCTCAAGGCCGATCCTCAG
ACGTTTAACTTCATCACCGAGATCCCGAAATTCACCAAGGCcaagatgga
ggtggcgaccAAGGAGGAACTCAACCCGATCTCCCAGGAcatgaagaaag
gaaaacTCCGCTTCTACCATGGCCCCATTTTCTGGAATTACGGACTCCTG
CCTCAGACCTGGGAGGATCCCAATCACACTCATCCGGAGctgaAGGTGCA
GGGAGACAACGACCCCGTGGACGTGGTCGAGATCGGGAGCACAGTGCTGA
GCATGGGGGCCGTGACGCCCGTGAAGCCCCTCGGAGTCCTCGCCATGATC
GATGACGGGGAGCTCGACTGGAAAATCATTGCGATCGCCGCCTCCGACCC
CATGGCCGGAGAGCTCAACGACATCGCCGACGTGGAGGCCAAGCTCCCTG
GGGTGGTTTCTGGGATCAGAGAATGGTTCCGTTGGTACAAAACGCCCGAT
GGCAAGCCCGTGAACGAGTTTGGATTCggagagaaggcgctggccaaggc
ggaTGCTTTGAAGGTAATTGATGAGACCCATGGAGCCTGGAAGAGTCTTA
TGAGCGGCCAGACAGACGCGGGCAAGCTTTGGAAGAAAGCCTGAATGATG
TTGCAGCGAGGAATCTTGGTGGTAATGGCATCGACTCTGCTGCTCCAATC
CTCCCTGGGATTCTTACGCCCGTCTACTGCCCTCCCAGCGGTCCGTGCCG
GGACGGCAAGCCTCCGATTGAGCAATTCTCGTCGATTCTTGGCTATGGTC
GGCACTGAGACGAAGGGTGCTGCGGACACTGAAGAGTTTCGTATCTTTTT
CAAGAAAGATGGCAACACGATTTCTCCCTGGCACGACATTCCCCTCAAGG
CCGATCCTCAGACGTTTAACTTCATCACCGAGATCCCGAAATTCACCAAG
GCcaagatggaggtggcgaccAAGGAGGAACTCAACCCGATCTCCCAGGA
catgaagaaaggaaaacTCCGCTTCTACCATGGCCCCATTTTCTGGAATT
ACGGACTCCTGCCTCAGACCTGGGAGGATCCCAATCACACTCATCCGGAG
ctgaAGGTGCAGGGAGACAACGACCCCGTGGACGTGGTCGAGATCGGGAG
CACAGTGCTGAGCATGGGGGCCGTGACGCCCGTGAAGCCCCTCGGAGTCC
TCGCCATGATCGATGACGGGGAGCTCGACTGGAAAATCATTGCGATCGCC
GCCTCCGACCCCATGGCCGGAGAGCTCAACGACATCGCCGACGTGGAGGC
CAAGCTCCCTGGGGTGGTTTCTGGGATCAGAGAATGGTTCCGTTGGTACA
AAACGCCCGATGGCAAGCCCGTGAACGAGTTTGGATTCggagagaaggcg
ctggccaaggcggaTGCTTTGAAGGTAATTGATGAGACCCATGGAGCCTG
GAAGAGTCTTATGAGCGGCCAGACAGACGCGGGCAAGCTTTGGAAGAAAG
CCTGAATGATGTTGCAGCGAGGAATCTTGGTGGTAATGGCATCGACTCTG
CTGCTCCAATCCTCCCTGGGATTCTTACGCCCGTCTACTGCCCTCCCAGC
GGTCCGTGCCGGGACGGCAAGCCTCCGATTGAGCAATTCTCGTCGATTCT
TGGCTATGGTCGGCACTGAGACGAAGGGTGCTGCGGACACTGAAGAGTTT
CGTATCTTTTTCAAGAAAGATGGCAACACGATTTCTCCCTGGCACGACAT
TCCCCTCAAGGCCGATCCTCAGACGTTTAACTTCATCACCGAGATCCCGA
AATTCACCAAGGCcaagatggaggtggcgaccAAGGAGGAACTCAACCCG
ATCTCCCAGGAcatgaagaaaggaaaacTCCGCTTCTACCATGGCCCCAT
TTTCTGGAATTACGGACTCCTGCCTCAGACCTGGGAGGATCCCAATCACA
CTCATCCGGAGctgaAGGTGCAGGGAGACAACGACCCCGTGGACGTGGTC
GAGATCGGGAGCACAGTGCTGAGCATGGGGGCCGTGACGCCCGTGAAGCC
CCTCGGAGTCCTCGCCATGATCGATGACGGGGAGCTCGACTGGAAAATCA
TTGCGATCGCCGCCTCCGACCCCATGGCCGGAGAGCTCAACGACATCGCC
GACGTGGAGGCCAAGCTCCCTGGGGTGGTTTCTGGGATCAGAGAATGGTT
CCGTTGGTACAAAACGCCCGATGGCAAGCCCGTGAACGAGTTTGGATTCg
gagagaaggcgctggccaaggcggaTGCTTTGAAGGTAATTGATGAGACC
CATGGAGCCTGGAAGAGTCTTATGAGCGGCCAGACAGACGCGGGCAAGCT
TTGGAAGAAAGCCTGA

Synonyms

Publications