rna4779, rna4779 (mRNA) Nannochloropsis gaditana

Overview
Namerna4779
Unique Namerna4779
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1914
Alignment locationCM002464.1:330682..333130 +

Link to JBrowse

Properties
Property NameValue
Productmajor facilitator superfamily
Orig transcript idgnl|cribi|Naga_100048g16.10272.mrna
Orig protein idgnl|cribi|Naga_100048g16.10272
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:330682..333130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100048g16gene4616Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4779rna4779-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25900.1cds4767Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4779 ID=rna4779|Name=rna4779|organism=Nannochloropsis gaditana|type=mRNA|length=1914bp
TTTTCCAACAACGATACAGTCGAGGGCGCCGCAGCTTTCATTTTCAACCA
GATTGAATAGATGGCTGACCATCTCCGCCGTGCTGATCGTTCTAAACAGA
CGAAAAACTTCTATACGGTACTAGGGGTCGAGAAAGGCGCGTCAATAAAT
CAAATCACTAAAGCATATCGGATCCTGGCCTTGCGCTATCATCCCGATCG
CAACCTAAAGGATGCCCCGACGGGCGAAAAGTTTAAGGAAATTTCTACAG
CGTATGCAATTTTATCGGATCCAAATAAACGGCGACGCTACGATTTGAGC
GGAGGAGACACGTCAGAAATGTTTGACGACAGCACAGAGAGTCTGGATTT
GGAAAATTTAAACAGCCTGCAAAAGGTTGTGTTTGCCATTATTACCAGAT
TTGGTCCAAATTTTCAGACGCAAGTCAATGCGGAGACATTGATCAAGGCT
AAGGATTTATGCAACGATGTGCGGGCCAAGAACCGGGGCAAGGAGAAGGG
AAAGCGGGAGGAAGGGCAGCGGGTCGTCAATTTAAAGCCAGGCTTTTCCA
TGGTCGGTAAAACAGTTGCGCAGCGAGGAAATTTTTATCGGCTGCAACTA
TCGGAAGCAGACGCGGCGAACGGTGTCATTGTCAGCTGTTGCTCCTCCAG
TCAAGATCGATTCAAGCTGATCTGTTTCGAAGCGGACGGCAGTGTCCGTT
ACATGCAGGAAAGCAGCCCGCATCACGAGAAGAAAGACACCGTGGCAGAC
CTGCTCTTGGTGCCCTTCCAGACAATCACCTCATACGGGACCAGCGAAAA
TTATGAGATAAAGAAAACGGATCCCCTCCTCTTTTCCCGCCTCAATATCC
TCACCCTGGAGGCTCGCTCCATTCAGGCTGGGGAGCATCTGCTCTGCGTG
TACGGGGACAATTGGTACACGGGATCCTCTTACACGATCACCATCATGCG
GGCTCATCTCGATCCCCTCCTGGTGCAAACGATGAGGGAAATGGACGACA
AGCTCTACGCCAAAAAGGGCGAAATTGAGCTGCTCAAGGAGCAGTACGAT
CGTGCCGAGGCTGCCTTCGAGGCCATTAAGGCCAAAGTGGACGAGGAGAG
TAAGGTTACGGAGGCACTGGTGCAAGAGAGGGAAGCAGCCTACTCTCGGT
TCATCACTTCATCGGTTCGAAATTATGGACCGCACCTCAGTGCAGGCCTT
AAAGGTCCGCCGACATCCTCGACGGCTCAGGCGGCTCCCTCTCTTCCCTT
GGCACAGGGCTCGCACATGGAGGCCCTGTCAGCTTCCACCTCGGGCGGGC
TCCCGGTGGGGGTCTCTGAGACGAACAAAGACAGCAAGGAAGTGGTGTCT
CCAGCAGCCCGAGCTTCCGCGGATCTAGGCGAAGGGAAGAATTGTAAATC
AGCACCAGGAGCAGGCGTGACCAGAGCGGCAGAAAGATCAGGAAATAGTG
ATAAATCTATCTCCGGCACTAGTCCAACGAAGAGGTCGTCTTTTTCCTTT
CTCGCAGGTTTCAGACGGGGGGGAAGAGGAGGATCAATTGTGCAACAAGA
AGAGTTGCAGGCCTCAAAGGCATAATCTCCAGTAAATGGCTATAGATGGA
TAGGTTTCTGCGTATGTACACTGGTAACTAACATTGATTGACCGATCGAG
AGACTCGTAATCCTACGGAGCATTTCGGAGACTACACGGCGATCTTGCTT
TTGGCAAAAGTACTTCTGGGTAACAGACATTTGCTGTGATTTGTGTGACT
TTTGCTTCTTTTTCAAACGTTTGCTTCCACGGGGTTCAAGTGATCGCCTT
TTTCCCCTCTTCGTACAAAGCTTGGGCAGCGCGGTCGGAGAAACGAACCA
TGTTCATCAGCGAAGTGGATCACTCACAAAATCATTACGACAGCATTGAA
AAATGCGAAAATTC
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protein sequence of rna4779

>rna4779-protein ID=rna4779-protein|Name=rna4779|organism=Nannochloropsis gaditana|type=polypeptide|length=589bp
MMIIPFLRTGPKAAILGGFLLHLVMGTLYTFGSLTVYLTSYLRVYDPTVT
YNNTIVIYACTIAGQALLMFLGGKIELRVGPRAAAAIGSCCLVGAPLLSS
MVTSLWAMTCTYGLLFGFGGGLTYTVPLVCGYRWEPERKGLVSGVILSGF
GLSALVFNQIQSVLVNPHNLKPDVVYKNKRYFGPGPVTDAVPGLLVKLGL
LYSLLCVTGTLLLQDPIYKKIEDGAEEEEEDKKERGCLSASSHYLDIVGA
ESTALVAAGDGPAHDSRVHKRDAPCEVAGGSSPLRRRGWEEEGAMEISTL
EYQRLREDREPVGEGGKGREGGRGGVAVGNGGHKNGVGEEVKGGGRDLAG
KEPRLGGTQVDKGSDKDVNGERARPGAEEEEEVEVSPSELVCLPQAWHVS
LSFTLGALSGLVTLATYKSIGISTFLDDHFMSAVVGSVSSVANALGRIFW
GWMSDRAGAYRTLYILCLCQAGFLFAWGLTVGAWKSRWLFALCVAGVAFS
HGGNFAIYPALIATLFGKTNSAPNFGLIFLFYGLASLVGLSVLPWLSPEL
TPLCDVLGGIALTSAGSVWGLQAWYTPKLKAGGRHPLLR
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mRNA from alignment at CM002464.1:330682..333130+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4779 ID=rna4779|Name=rna4779|organism=Nannochloropsis gaditana|type=mRNA|length=2449bp|location=Sequence derived from alignment at CM002464.1:330682..333130+ (Nannochloropsis gaditana)
CACCACAGCCAGCCGGAGGTTACTGCTTATCTTCTCCCGAATAGCCCCCT CGGCGAGGTGCTTCATGATGATTATCCCCTTCCTACGCACGGGCCCCAAA GCAGCAATTTTGGGAGGTTTCCTGCTCCATTTGGTCATGGGCACGTAAGT GATGACTCGCTACTTCTCATTTACTGTGAGGACATTGTTGCCATTTTGGA AAGGGATTTTTAATGCCAATTTATGGCTCCTTGGTCTGCACGGGATATTT TGATGTTACCTTCTTCTGCAGCATTGCAATGGTGCAGGTGACTCacgcct ccatcctttttGGAAAGAGCCAAATTGATGGACTtatctttcttctttcc ttcgttTTTAACCTCACTAATGATACAGCAATTCTTTTCTATCTCTACAA CTCCATACCATCATCTACAGGCTCTATACTTTCGGCTCCCTGACCGTGTA TCTCACTTCCTACCTACGCGTTTATGATCCTACCGTTACCTACAACAACA CCATCGTAATTTATGCGTGTACAATAGCTGGGCAAGCTCTTTTGATGTTT CTTGGTGGAAAAATTGAACTTCGCGTGGGTCCTCGCGCGGCCGCTGCCAT TGGTTCATGCTGCTTGGTCGGCGctcccttgctctcttcAATGGTGACGA GCCTGTGGGCGATGACATGCACCTATGGGCTACTGTTTGGgtttggagga ggcctgaCGTATACCGTGCCCCTCGTGTGCGGGTACCGGTGGGAGCCAGA GCGCAAGGGACTGGTCAGCGGCGTGATTCTGAGCGGCTTCggcctctccg ccttggTCTTCAATCAGATCCAGTCCGTCCTCGTCAATCCGCACAATTTG AAGCCGGACGTGGTCTACAAGGTGTGTCTATGTGAAGATGGACAGCCCAT GGCAAAGCCCAGTGTTTCTCCAGGGCTCCTGGCGCAGATTTATGAATTTG CGCTTTTACACGTGTCCCGAATCGGTCTAAACTGAGCCATCTCTTCCACT CTTGTGCCCCCCTTTTTAATTCAGAATAAGCGATACTTCGGGCCCGGCCC TGTGACCGACGCGGTCCCGGGCTTGCTGGTAAAGCTCGGCCTCCTATACT CCCTGCTCTGCGTCACCGGCACCCTTCTGTTGCAGGACCCTATCTACAAG AAGatcgaggacggggcggaggaagaggaggaggacaagaaagagagagg ctgtttgtccgcttcctcccactacCTGGACATTGTCGGGGCTGAGTCGA CCGCCCTGGTGGCAGCCGGCGACGGGCCCGCTCACGACAGTCGTGTCCAC AAGAGAGACGCCCCGTGCGAGGTAGCTGGGGGTTCCTCGCCGCTCCGACg gcgtgggtgggaggaggaaggggctaTGGAAATCTCGACTCTGGAATACC AGCGGTTgcgggaagacagggagccggtgggagagggagggaaggggagg gaaggagggagaggaggagtcgCGGTAGGGAATGGAGGACATAAAAATGG TGTCGGGGAAGAGgtaaagggaggagggagggacttggcagggaaggagc cAAGGTTAGGAGGTACGCAGGTCGATAAGGGCTCAGACAAGGACGTAAAC GGGGAAAGGGCCAGGccgggagcggaggaggaggaggaggtggaggtatC ACCGTCGGAACTCGTCTGCCTGCCGCAAGCGTGGCACGTGTCCCTGTCGT TCACCTTAGGGGCCTTGAGCGGGCTGGTAACCCTGGCCACCTACAAGAGT ATCGGCATCTCCACCTTCCTGGACGACCACTTCATGTCCGCAGTTGTGGG CAGCGTGTCCTCCGTGGCCAACGCCCTCGGGCGGATTTTTTGGGGCTGGA TGAGCGACCGTGCGGGTGCTTATCGCACGCTCTACATCCTCTGCCTGTGT CAGGCAGGCTTCCTTTTTGCCTGGGGCCTGACGGTGGGCGCGTGGAAGAG CCGGTGGCTGTTTGCGCTCTGCGTCGCCGGGGTGGCCTTCTCCCACGGGG GCAATTTTGCAATTTACCCGGCCCTGATCGCCACCCTCTTTGGGAAGACG AACAGCGCTCCGAATTTTGGGCTGATCTTCTTGTTCTATGGCCTTGCCTC CCTGGTCGGGCTCAGTGTCCTACCCTGGTTGTCTCCTGAGCTGACCCCAT TGTGCGATGTGCTGGGAGGGATCGCACTGACCTCGGCGGGGTCCGTGTGG GGGCTGCAGGCCTGGTACACACCCAAGCtgaaagcgggggggaggcatcC GCTTTTGcgatgaaaggaggggggttgTGGACGTGttgggggaagagaag cggaacgggggagggaggagccggggCTCTCCCTGGAAGACCCCCGGGCC TTGTACATCAGTGAGACCGCTCGGCACCATCGATGATGACGGGTCTCGTG TTACATAGGACAAGGAAAATAGCATATAGCACACCAAATGACCAAGACG
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Coding sequence (CDS) from alignment at CM002464.1:330682..333130+

>rna4779 ID=rna4779|Name=rna4779|organism=Nannochloropsis gaditana|type=CDS|length=5310bp|location=Sequence derived from alignment at CM002464.1:330682..333130+ (Nannochloropsis gaditana)
ATGATGATTATCCCCTTCCTACGCACGGGCCCCAAAGCAGCAATTTTGGG
AGGTTTCCTGCTCCATTTGGTCATGGGCACGCTCTATACTTTCGGCTCCC
TGACCGTGTATCTCACTTCCTACCTACGCGTTTATGATCCTACCGTTACC
TACAACAACACCATCGTAATTTATGCGTGTACAATAGCTGGGCAAGCTCT
TTTGATGTTTCTTGGTGGAAAAATTGAACTTCGCGTGGGTCCTCGCGCGG
CCGCTGCCATTGGTTCATGCTGCTTGGTCGGCGctcccttgctctcttcA
ATGGTGACGAGCCTGTGGGCGATGACATGCACCTATGGGCTACTGTTTGG
gtttggaggaggcctgaCGTATACCGTGCCCCTCGTGTGCGGGTACCGGT
GGGAGCCAGAGCGCAAGGGACTGGTCAGCGGCGTGATTCTGAGCGGCTTC
ggcctctccgccttggTCTTCAATCAGATCCAGTCCGTCCTCGTCAATCC
GCACAATTTGAAGCCGGACGTGGTCTACAAGAATAAGCGATACTTCGGGC
CCGGCCCTGTGACCGACGCGGTCCCGGGCTTGCTGGTAAAGCTCGGCCTC
CTATACTCCCTGCTCTGCGTCACCGGCACCCTTCTGTTGCAGGACCCTAT
CTACAAGAAGatcgaggacggggcggaggaagaggaggaggacaagaaag
agagaggctgtttgtccgcttcctcccactacCTGGACATTGTCGGGGCT
GAGTCGACCGCCCTGGTGGCAGCCGGCGACGGGCCCGCTCACGACAGTCG
TGTCCACAAGAGAGACGCCCCGTGCGAGGTAGCTGGGGGTTCCTCGCCGC
TCCGACggcgtgggtgggaggaggaaggggctaTGGAAATCTCGACTCTG
GAATACCAGCGGTTgcgggaagacagggagccggtgggagagggagggaa
ggggagggaaggagggagaggaggagtcgCGGTAGGGAATGGAGGACATA
AAAATGGTGTCGGGGAAGAGgtaaagggaggagggagggacttggcaggg
aaggagccAAGGTTAGGAGGTACGCAGGTCGATAAGGGCTCAGACAAGGA
CGTAAACGGGGAAAGGGCCAGGccgggagcggaggaggaggaggaggtgg
aggtatCACCGTCGGAACTCGTCTGCCTGCCGCAAGCGTGGCACGTGTCC
CTGTCGTTCACCTTAGGGGCCTTGAGCGGGCTGGTAACCCTGGCCACCTA
CAAGAGTATCGGCATCTCCACCTTCCTGGACGACCACTTCATGTCCGCAG
TTGTGGGCAGCGTGTCCTCCGTGGCCAACGCCCTCGGGCGGATTTTTTGG
GGCTGGATGAGCGACCGTGCGGGTGCTTATCGCACGCTCTACATCCTCTG
CCTGTGTCAGGCAGGCTTCCTTTTTGCCTGGGGCCTGACGGTGGGCGCGT
GGAAGAGCCGGTGGCTGTTTGCGCTCTGCGTCGCCGGGGTGGCCTTCTCC
CACGGGGGCAATTTTGCAATTTACCCGGCCCTGATCGCCACCCTCTTTGG
GAAGACGAACAGCGCTCCGAATTTTGGGCTGATCTTCTTGTTCTATGGCC
TTGCCTCCCTGGTCGGGCTCAGTGTCCTACCCTGGTTGTCTCCTGAGCTG
ACCCCATTGTGCGATGTGCTGGGAGGGATCGCACTGACCTCGGCGGGGTC
CGTGTGGGGGCTGCAGGCCTGGTACACACCCAAGCtgaaagcggggggga
ggcatcCGCTTTTGcgatgaATGATGATTATCCCCTTCCTACGCACGGGC
CCCAAAGCAGCAATTTTGGGAGGTTTCCTGCTCCATTTGGTCATGGGCAC
GCTCTATACTTTCGGCTCCCTGACCGTGTATCTCACTTCCTACCTACGCG
TTTATGATCCTACCGTTACCTACAACAACACCATCGTAATTTATGCGTGT
ACAATAGCTGGGCAAGCTCTTTTGATGTTTCTTGGTGGAAAAATTGAACT
TCGCGTGGGTCCTCGCGCGGCCGCTGCCATTGGTTCATGCTGCTTGGTCG
GCGctcccttgctctcttcAATGGTGACGAGCCTGTGGGCGATGACATGC
ACCTATGGGCTACTGTTTGGgtttggaggaggcctgaCGTATACCGTGCC
CCTCGTGTGCGGGTACCGGTGGGAGCCAGAGCGCAAGGGACTGGTCAGCG
GCGTGATTCTGAGCGGCTTCggcctctccgccttggTCTTCAATCAGATC
CAGTCCGTCCTCGTCAATCCGCACAATTTGAAGCCGGACGTGGTCTACAA
GAATAAGCGATACTTCGGGCCCGGCCCTGTGACCGACGCGGTCCCGGGCT
TGCTGGTAAAGCTCGGCCTCCTATACTCCCTGCTCTGCGTCACCGGCACC
CTTCTGTTGCAGGACCCTATCTACAAGAAGatcgaggacggggcggagga
agaggaggaggacaagaaagagagaggctgtttgtccgcttcctcccact
acCTGGACATTGTCGGGGCTGAGTCGACCGCCCTGGTGGCAGCCGGCGAC
GGGCCCGCTCACGACAGTCGTGTCCACAAGAGAGACGCCCCGTGCGAGGT
AGCTGGGGGTTCCTCGCCGCTCCGACggcgtgggtgggaggaggaagggg
ctaTGGAAATCTCGACTCTGGAATACCAGCGGTTgcgggaagacagggag
ccggtgggagagggagggaaggggagggaaggagggagaggaggagtcgC
GGTAGGGAATGGAGGACATAAAAATGGTGTCGGGGAAGAGgtaaagggag
gagggagggacttggcagggaaggagccAAGGTTAGGAGGTACGCAGGTC
GATAAGGGCTCAGACAAGGACGTAAACGGGGAAAGGGCCAGGccgggagc
ggaggaggaggaggaggtggaggtatCACCGTCGGAACTCGTCTGCCTGC
CGCAAGCGTGGCACGTGTCCCTGTCGTTCACCTTAGGGGCCTTGAGCGGG
CTGGTAACCCTGGCCACCTACAAGAGTATCGGCATCTCCACCTTCCTGGA
CGACCACTTCATGTCCGCAGTTGTGGGCAGCGTGTCCTCCGTGGCCAACG
CCCTCGGGCGGATTTTTTGGGGCTGGATGAGCGACCGTGCGGGTGCTTAT
CGCACGCTCTACATCCTCTGCCTGTGTCAGGCAGGCTTCCTTTTTGCCTG
GGGCCTGACGGTGGGCGCGTGGAAGAGCCGGTGGCTGTTTGCGCTCTGCG
TCGCCGGGGTGGCCTTCTCCCACGGGGGCAATTTTGCAATTTACCCGGCC
CTGATCGCCACCCTCTTTGGGAAGACGAACAGCGCTCCGAATTTTGGGCT
GATCTTCTTGTTCTATGGCCTTGCCTCCCTGGTCGGGCTCAGTGTCCTAC
CCTGGTTGTCTCCTGAGCTGACCCCATTGTGCGATGTGCTGGGAGGGATC
GCACTGACCTCGGCGGGGTCCGTGTGGGGGCTGCAGGCCTGGTACACACC
CAAGCtgaaagcgggggggaggcatcCGCTTTTGcgatgaATGATGATTA
TCCCCTTCCTACGCACGGGCCCCAAAGCAGCAATTTTGGGAGGTTTCCTG
CTCCATTTGGTCATGGGCACGCTCTATACTTTCGGCTCCCTGACCGTGTA
TCTCACTTCCTACCTACGCGTTTATGATCCTACCGTTACCTACAACAACA
CCATCGTAATTTATGCGTGTACAATAGCTGGGCAAGCTCTTTTGATGTTT
CTTGGTGGAAAAATTGAACTTCGCGTGGGTCCTCGCGCGGCCGCTGCCAT
TGGTTCATGCTGCTTGGTCGGCGctcccttgctctcttcAATGGTGACGA
GCCTGTGGGCGATGACATGCACCTATGGGCTACTGTTTGGgtttggagga
ggcctgaCGTATACCGTGCCCCTCGTGTGCGGGTACCGGTGGGAGCCAGA
GCGCAAGGGACTGGTCAGCGGCGTGATTCTGAGCGGCTTCggcctctccg
ccttggTCTTCAATCAGATCCAGTCCGTCCTCGTCAATCCGCACAATTTG
AAGCCGGACGTGGTCTACAAGAATAAGCGATACTTCGGGCCCGGCCCTGT
GACCGACGCGGTCCCGGGCTTGCTGGTAAAGCTCGGCCTCCTATACTCCC
TGCTCTGCGTCACCGGCACCCTTCTGTTGCAGGACCCTATCTACAAGAAG
atcgaggacggggcggaggaagaggaggaggacaagaaagagagaggctg
tttgtccgcttcctcccactacCTGGACATTGTCGGGGCTGAGTCGACCG
CCCTGGTGGCAGCCGGCGACGGGCCCGCTCACGACAGTCGTGTCCACAAG
AGAGACGCCCCGTGCGAGGTAGCTGGGGGTTCCTCGCCGCTCCGACggcg
tgggtgggaggaggaaggggctaTGGAAATCTCGACTCTGGAATACCAGC
GGTTgcgggaagacagggagccggtgggagagggagggaaggggagggaa
ggagggagaggaggagtcgCGGTAGGGAATGGAGGACATAAAAATGGTGT
CGGGGAAGAGgtaaagggaggagggagggacttggcagggaaggagccAA
GGTTAGGAGGTACGCAGGTCGATAAGGGCTCAGACAAGGACGTAAACGGG
GAAAGGGCCAGGccgggagcggaggaggaggaggaggtggaggtatCACC
GTCGGAACTCGTCTGCCTGCCGCAAGCGTGGCACGTGTCCCTGTCGTTCA
CCTTAGGGGCCTTGAGCGGGCTGGTAACCCTGGCCACCTACAAGAGTATC
GGCATCTCCACCTTCCTGGACGACCACTTCATGTCCGCAGTTGTGGGCAG
CGTGTCCTCCGTGGCCAACGCCCTCGGGCGGATTTTTTGGGGCTGGATGA
GCGACCGTGCGGGTGCTTATCGCACGCTCTACATCCTCTGCCTGTGTCAG
GCAGGCTTCCTTTTTGCCTGGGGCCTGACGGTGGGCGCGTGGAAGAGCCG
GTGGCTGTTTGCGCTCTGCGTCGCCGGGGTGGCCTTCTCCCACGGGGGCA
ATTTTGCAATTTACCCGGCCCTGATCGCCACCCTCTTTGGGAAGACGAAC
AGCGCTCCGAATTTTGGGCTGATCTTCTTGTTCTATGGCCTTGCCTCCCT
GGTCGGGCTCAGTGTCCTACCCTGGTTGTCTCCTGAGCTGACCCCATTGT
GCGATGTGCTGGGAGGGATCGCACTGACCTCGGCGGGGTCCGTGTGGGGG
CTGCAGGCCTGGTACACACCCAAGCtgaaagcgggggggaggcatcCGCT
TTTGcgatga
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Synonyms
Publications