rna4772, rna4772 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4772
Unique Name	rna4772
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1806
Alignment location	CM002464.1:312518..315313 +

Link to JBrowse

Properties


Property Name	Value
Product	homoaconitate hydratase family protein
Orig transcript id	gnl\|cribi\|Naga_100048g8.10273.mrna
Orig protein id	gnl\|cribi\|Naga_100048g8.10273
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:312518..315313 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100048g8	gene4609	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4772	rna4772-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25901.1	cds4760	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:312518..315313+
coding sequence from alignment at CM002464.1:312518..315313+

mRNA sequence

>rna4772 ID=rna4772|Name=rna4772|organism=Nannochloropsis gaditana|type=mRNA|length=1806bp
ATGAACATCCCGTCCACACCAGGCGCAGTGCTCCGCGGCACATATTCAGG
ACGCGATAGTTTTTTAAGCTTCTCAGGATCTCCCTTTACTATTTTGAAGA
CGCGTATCATGCTGTCTACTGCCTGCAAGCGCTTTGCTTCATTCAAAGCA
GTCCGGGGATTGCACAATGCTGCCCCTATCAAGCCCTCTCACCACCCTCG
CATCACCCAGCTTCTGATTGACGGCAAGTTCACGGACGCGGTGTCTGGCA
AGACTTTCCAAACCATCGACCCGCGTACCGAGGAAACCATCGTCGAGGTT
GCCGCAGCCGACAAAGAAGACGTAAATTTGGCCGTCAATGCGGCCAGGAA
AGCTTTCGAGACGGGACCGTGGCGAAAGATGAGCGGGCGGGAACGTGGGA
AAATTCTTTTCCGCCTGGCAGACCTGATGGAGGCGCACAAGGAGGAGTTG
GCAGTCTTGGAGACTCTGGACAATGGGAAGCCCCTCTCCTTGTCTCGAAA
CTCGGACGTGCCTTTGGCCATCGACCACTACCGGTACTTCGCCGGCTGGG
CCGACAAAATCCACGGGCAGACCATCCCCGTGGACGGCCCGTTCTTCGCC
TACACCCTCCGCGAGCCCGTCGGGGTCGTGGGACAGATTATTCCGTGGAA
TTTCCCTCTCCTGATGCAAGCATGGAAACTCGGCCCCGCCCTGGCTGCGG
GCAACACCGTGGTGATGAAGCTGGCGGAGCAAACACCTCTGACCGGCCTG
CGGGTCGGCGAGCTGGCGTTAGAAGCCGGTATGCCCCCTGGCGTGCTGAA
CCTGGTGGCCGGTATGGGGGAGACGGCGGGGGCGGCCCTGTGCTCGCACA
TGGACGTGGACAAGATCGCTTTCACGGGGTCCACGGAGGTGGGGCACATG
GTCATGAAAGCTGCCGCTGAGAGCAACATGAAGAAAGTGACCCTGGAGTT
GGGTGGGAAGAGCCCCTTCATCATCTGCGAGGACGCAGACATCGACAGGG
CCGTTTCCGACGCCCACCACGCCCTCTTTATGAACCACGGCCAGTGCTGT
GTGGCTGGTTCCCGTCTCTTTGTGCACGACAACATTTACGACGAGTTTGT
AAAGAAATCAGTCAAGCTCGCCAAAAAGAAGAGGGTGGGAGACCCCTTCC
ACCCCGACTCCGAGCAAGGGCCACAAGTCTCGCAGGAGCAGCTCGATCGT
ATCTTACGTTACGTGGGGATTGGACAAGAGGAGGGCGCGAGCCTGCAGAC
AGGCGGGGCCAGGCTGGGGACGAAAGGGTACTTTATGGAGCCCACTGTCT
TCGCAGAGGTGGAGGACCATCACACCATTGCGAAGGAGGAAATTTTTGGC
CCTGTCATGAGCATCATCCGCTGGAAGACATTGGAGGAGGTGGCGTTCAG
GGCGAACAACACCACGTATGGGCTGGCCGCTGGCATCTGGAGTAGCAGCG
CCAATACCCTTCAGTACCTCTCGCGCGCGGTGAAAGCCGGCACCTTGTTC
GTCAACTGCTACAACGTTTTTGACGCCTCACTTCCTTTCGGCGGGGCGCG
CCCCGGCTCCGGACAGGGTCGTGATAAGGGCGAAGCTGCACTCTCGCATT
ACACTGAGCTCAAAACGGTCATTCAACGTGTGTACAGGCCTGGTACTGTT
AAGACCTTTTTTGCATTAAAAAGCTGGGGAAAAAAAATAGTTGAATCGCC
GCAAACATTGTGTGTCTATCAGGCGGGTAATGATGATAATACATACGGTG
AACCGTGGTTGCTTATAACATTGCATATATGTATCAAATATATACCTCCA
CCCTGA

protein sequence of rna4772

>rna4772-protein ID=rna4772-protein|Name=rna4772|organism=Nannochloropsis gaditana|type=polypeptide|length=518bp
MAPAAQIVTMLGATLALCNAFVPPVPSTSPRFSKLAAPRRLAAAGADGAS
TKAPPMTLTEKILARAAGKESVAPNDNVWVRADNLMTHDVCGPGTFGLFK
KEFGANAKVWDRERVLIIPDHYIFTSDPRANRNVDILRDFVQEQNIKYFY
DITDRGEFKANPDYKGVCHVALAQEGHTRPGEVLFGTDSHTCNAGAFGQF
ATGIGNTDAAFVLGTGKLLLKVPASMKFELNGEIPDYLLAKDMILQIIGD
IGVAGATYRAMEFGGNAIRQLSMEERQTLCNMAIEAGGKNGIIPADEVTT
AYVDARNAGSRPYTIFEADPDASYFAKYAYDLSSLEPVVAKPHSPDNRAL
ARECRDIKIDRVYIGSCTGGKTEDFVAAARILQQNKVSVPTFLVPATRRV
YDDLYSLTLGGRTLAQIFRDAGCIDPASPSCAACLGGPADTFARMNEPLL
CVSTTNRNFPGRMGHKDAGIFLASPYTAAASAVTGYVTDPREVFEFSQTR
QPAETLATKAPASVFAKK

mRNA from alignment at CM002464.1:312518..315313+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4772 ID=rna4772|Name=rna4772|organism=Nannochloropsis gaditana|type=mRNA|length=2796bp|location=Sequence derived from alignment at CM002464.1:312518..315313+ (Nannochloropsis gaditana)
TCTGTCTGTTTCTTTCTATGCAAGAAATTTATTGTCCTAGGCTCTGTCCG
CGagattttggcgcgaagcctTGAGCGGCCCCCGAGCCACCCTTTCCTGT
CACGTTTTGCTAAAGTCAAGACGGTAAACACGCGCACCACAACAATGGCA
GACATGTAACATTTCATTGTTGGCGTTTGTACTGTTTATGCTGATCGCTG
CATTGGGGTGCGGCTGCTTCGCATATGTTTGCATGGAGTTGTTAAGCTCA
GTCGCTTTTCCTGGCCGGGAAGCGAGATCGAGAtcttcttgcccttctct
ctccctgccgGGATGCCACGAGTGCATAGAGCTGAGATGTTAGAGGCGAA
GAAGGTGTCAACATATACAAGTGCTTATATCGTGACATCATCGTGGTCAA
GGCGTGTTTTTAACCGCCGTGTCTGATATAGCATAGCTTCGATGATAACT
CCATCCCCGTGAAAATTGTTTCCGATGCATTCTGATAGAGCATTATATTT
TTACAAGCGCGGATGCCATGCATTGACTATCATTACTATGCACAGATATA
CGGGTGTTTGTAAGGAGGTATGCTGATAACGGCCTTTGTTCACAGGCGTA
CGGGCAAGGCTCGAAGCTGTACAGTTTTCTCTCACACACTACTTCCATCT
CACCCAAACTAATGCCGCACACCCAGTTCCTAACATGGCACCAGCCGCCC
AAATCGTCACAATGTTGGGCGCCACCTTGGCGTTGTGCAACGCCTTCGTC
CCGCCCGTTCCTTCTACTTCTCCCCGGTTTTCCAAGCTTGCGGCCCCAAG
GCGTCTAGCGGCTGCCGGTGCCGATGGTGCTTCCACAAAAGCCCCCCCCA
TGACCTTGACCGAGAAAATCCTCGCTCGTGccgcagggaaggaaagtgtg
GCGCCGAACGATAACGTCTGGGTGCGAGCAGACAACCTGATGACCCACGA
CGTGTGCGGGCCGGGCACTTTCGGCCTCTTTAAGAAGGAGTTCGGGGCCA
ATGCCAAAGTCTGGGACCGGGAGCGTGTGCTCATCATTCCCGACCACTAC
ATTTTCACCTCGGACCCCCGGGCAAACCGCAACGTGGACATCCTTCGGGA
TTTTGTACAAGAACAGAACATCAAATACTTCTACGACATCACCGACCGAG
GAGAGTTCAAAGCCAACCCGGACTACAAGGGGGTCTGCCACGTGGCGCTC
GCGCAAGAAGGTCACACACGTCCTGGCGAAGTCTTGTTCGGGACCGACTC
TCACACCTGCAATGCGGGTGCCTTCGGGCAGTTCGCCACGGGCATCGGCA
ACACCGAcgccgccttcgtcctcggcACCGGAAAGCTCTTGTTGAAGGTG
CCCGCCTCCATGAAGTTCGAGCTGAACGGGGAGATCCCCGACTACCTGCT
CGCCAAGGACATGATCCTCCAGATCATTGGGGACATTGGAGTAGCCGGCG
CCACCTACCGGGCCATGGAATTTGGCGGGAACGCGATCCGGCAGCTGAGC
ATGGAGGAGCGACAGACCCTCTGCAACATGGCCATCGAAGCGGGCGGCAA
GAACGGGATCATCCCTGCCGACGAGGTGACCACCGCCTACGTTGACGCTC
GCAATGCGGGGTCTCGGCCCTACACCATCTTCGAGGCGGACCCTGACGCT
TCTTACTTCGCCAAGTACGCGTACGACCTGAGTAGTCTGGAGCCCGTGGT
GGCCAAGCCGCACTCGCCTGACAACCGGGCGCTGGCTCGAGAATGCCGGG
ACATCAAGATCGATCGCGTCTACATTGGGTCCTGcacggggggaaagacg
gaggattTCGTCGCGGCGGCCCGAATCTTGCAGCAGAACAAGGTGTCCGT
GCCTACCTTCTTGGTCCCGGCCACGCGCAGGGTCTATGATGATTTGTATT
CACTCAcgctggggggaaggacgctgGCCCAGATCTTCAGGGACGCGGGA
TGCATTGATCCGGCGTCACCATCTTGCGCCGCCTGCTTGGGGGGTCCGGC
CGATACGTTCGCGCGCATGAACGAGCCTTTGTTGTGCGTGAGCACTACCA
ATAGGTATGTTGAAGTATCATtttgggggaagggatgaggaaagaaaagg
aggagaggagggtggatcGGCCGGGCGGACGCCATTAATTGGCCGTTGTG
TAGGTGCGAATCACGGGGAGGTAGCCACTCACTTTTTCTCTCTTCGCCCC
GACCCTCCAGAAATTTCCCCGGTCGCATGGGCCACAAGGACGCAGGCATC
TTCCTGGCGTCGCCCTACACGGCCGCAGCCAGCGCCGTCACCGGGTACGT
GACGGACCCCCGGGAGGTGTTTGAATTTTCACAGACGCGGCAGCCGGCCG
AGACCCTGGCAACCAAGGCGCCCGCGAGCGTCTTCGCCAAAAAGTAGATG
ACAGGGcttggaagggagaaaaggagggcgaagcATGTAAAGAAGGTATC
AGGGTGTGCGGGGGGCTTGAATGACAGGAAAGGGCAGTGGGAATGAAACA
GCGGGACAGGACGGACAACTGATAAGGGTGGCTGTAAGGAAGCTTCCCGC
TGATGAGGACTGATGGTTCCCGGGGATGGAGCAGCCCCCATGCAGGGAGT
ACCTGGTAGCAGTGGAAAGGAAATAGCAAAATTCTGGCATTCTCCTTCTG
CGTCTGTAAATTGCCCTGTACGCTCTGCTCCTGGACCGCACCGGTCATCC
CGGACTTGTTTCACCTCCCAACACCCTCTACGTTCATCCAAACCACACTT
TCCTCGACTCCATCGACTTGACCCCacacttcctcccgtcctcacg

Coding sequence (CDS) from alignment at CM002464.1:312518..315313+

>rna4772 ID=rna4772|Name=rna4772|organism=Nannochloropsis gaditana|type=CDS|length=3114bp|location=Sequence derived from alignment at CM002464.1:312518..315313+ (Nannochloropsis gaditana)
ATGGCACCAGCCGCCCAAATCGTCACAATGTTGGGCGCCACCTTGGCGTT
GTGCAACGCCTTCGTCCCGCCCGTTCCTTCTACTTCTCCCCGGTTTTCCA
AGCTTGCGGCCCCAAGGCGTCTAGCGGCTGCCGGTGCCGATGGTGCTTCC
ACAAAAGCCCCCCCCATGACCTTGACCGAGAAAATCCTCGCTCGTGccgc
agggaaggaaagtgtgGCGCCGAACGATAACGTCTGGGTGCGAGCAGACA
ACCTGATGACCCACGACGTGTGCGGGCCGGGCACTTTCGGCCTCTTTAAG
AAGGAGTTCGGGGCCAATGCCAAAGTCTGGGACCGGGAGCGTGTGCTCAT
CATTCCCGACCACTACATTTTCACCTCGGACCCCCGGGCAAACCGCAACG
TGGACATCCTTCGGGATTTTGTACAAGAACAGAACATCAAATACTTCTAC
GACATCACCGACCGAGGAGAGTTCAAAGCCAACCCGGACTACAAGGGGGT
CTGCCACGTGGCGCTCGCGCAAGAAGGTCACACACGTCCTGGCGAAGTCT
TGTTCGGGACCGACTCTCACACCTGCAATGCGGGTGCCTTCGGGCAGTTC
GCCACGGGCATCGGCAACACCGAcgccgccttcgtcctcggcACCGGAAA
GCTCTTGTTGAAGGTGCCCGCCTCCATGAAGTTCGAGCTGAACGGGGAGA
TCCCCGACTACCTGCTCGCCAAGGACATGATCCTCCAGATCATTGGGGAC
ATTGGAGTAGCCGGCGCCACCTACCGGGCCATGGAATTTGGCGGGAACGC
GATCCGGCAGCTGAGCATGGAGGAGCGACAGACCCTCTGCAACATGGCCA
TCGAAGCGGGCGGCAAGAACGGGATCATCCCTGCCGACGAGGTGACCACC
GCCTACGTTGACGCTCGCAATGCGGGGTCTCGGCCCTACACCATCTTCGA
GGCGGACCCTGACGCTTCTTACTTCGCCAAGTACGCGTACGACCTGAGTA
GTCTGGAGCCCGTGGTGGCCAAGCCGCACTCGCCTGACAACCGGGCGCTG
GCTCGAGAATGCCGGGACATCAAGATCGATCGCGTCTACATTGGGTCCTG
cacggggggaaagacggaggattTCGTCGCGGCGGCCCGAATCTTGCAGC
AGAACAAGGTGTCCGTGCCTACCTTCTTGGTCCCGGCCACGCGCAGGGTC
TATGATGATTTGTATTCACTCAcgctggggggaaggacgctgGCCCAGAT
CTTCAGGGACGCGGGATGCATTGATCCGGCGTCACCATCTTGCGCCGCCT
GCTTGGGGGGTCCGGCCGATACGTTCGCGCGCATGAACGAGCCTTTGTTG
TGCGTGAGCACTACCAATAGAAATTTCCCCGGTCGCATGGGCCACAAGGA
CGCAGGCATCTTCCTGGCGTCGCCCTACACGGCCGCAGCCAGCGCCGTCA
CCGGGTACGTGACGGACCCCCGGGAGGTGTTTGAATTTTCACAGACGCGG
CAGCCGGCCGAGACCCTGGCAACCAAGGCGCCCGCGAGCGTCTTCGCCAA
AAAGTAGATGGCACCAGCCGCCCAAATCGTCACAATGTTGGGCGCCACCT
TGGCGTTGTGCAACGCCTTCGTCCCGCCCGTTCCTTCTACTTCTCCCCGG
TTTTCCAAGCTTGCGGCCCCAAGGCGTCTAGCGGCTGCCGGTGCCGATGG
TGCTTCCACAAAAGCCCCCCCCATGACCTTGACCGAGAAAATCCTCGCTC
GTGccgcagggaaggaaagtgtgGCGCCGAACGATAACGTCTGGGTGCGA
GCAGACAACCTGATGACCCACGACGTGTGCGGGCCGGGCACTTTCGGCCT
CTTTAAGAAGGAGTTCGGGGCCAATGCCAAAGTCTGGGACCGGGAGCGTG
TGCTCATCATTCCCGACCACTACATTTTCACCTCGGACCCCCGGGCAAAC
CGCAACGTGGACATCCTTCGGGATTTTGTACAAGAACAGAACATCAAATA
CTTCTACGACATCACCGACCGAGGAGAGTTCAAAGCCAACCCGGACTACA
AGGGGGTCTGCCACGTGGCGCTCGCGCAAGAAGGTCACACACGTCCTGGC
GAAGTCTTGTTCGGGACCGACTCTCACACCTGCAATGCGGGTGCCTTCGG
GCAGTTCGCCACGGGCATCGGCAACACCGAcgccgccttcgtcctcggcA
CCGGAAAGCTCTTGTTGAAGGTGCCCGCCTCCATGAAGTTCGAGCTGAAC
GGGGAGATCCCCGACTACCTGCTCGCCAAGGACATGATCCTCCAGATCAT
TGGGGACATTGGAGTAGCCGGCGCCACCTACCGGGCCATGGAATTTGGCG
GGAACGCGATCCGGCAGCTGAGCATGGAGGAGCGACAGACCCTCTGCAAC
ATGGCCATCGAAGCGGGCGGCAAGAACGGGATCATCCCTGCCGACGAGGT
GACCACCGCCTACGTTGACGCTCGCAATGCGGGGTCTCGGCCCTACACCA
TCTTCGAGGCGGACCCTGACGCTTCTTACTTCGCCAAGTACGCGTACGAC
CTGAGTAGTCTGGAGCCCGTGGTGGCCAAGCCGCACTCGCCTGACAACCG
GGCGCTGGCTCGAGAATGCCGGGACATCAAGATCGATCGCGTCTACATTG
GGTCCTGcacggggggaaagacggaggattTCGTCGCGGCGGCCCGAATC
TTGCAGCAGAACAAGGTGTCCGTGCCTACCTTCTTGGTCCCGGCCACGCG
CAGGGTCTATGATGATTTGTATTCACTCAcgctggggggaaggacgctgG
CCCAGATCTTCAGGGACGCGGGATGCATTGATCCGGCGTCACCATCTTGC
GCCGCCTGCTTGGGGGGTCCGGCCGATACGTTCGCGCGCATGAACGAGCC
TTTGTTGTGCGTGAGCACTACCAATAGAAATTTCCCCGGTCGCATGGGCC
ACAAGGACGCAGGCATCTTCCTGGCGTCGCCCTACACGGCCGCAGCCAGC
GCCGTCACCGGGTACGTGACGGACCCCCGGGAGGTGTTTGAATTTTCACA
GACGCGGCAGCCGGCCGAGACCCTGGCAACCAAGGCGCCCGCGAGCGTCT
TCGCCAAAAAGTAG

Synonyms

Publications