rna4758, rna4758 (mRNA) Nannochloropsis gaditana

Overview
Namerna4758
Unique Namerna4758
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2077
Alignment locationCM002464.1:265362..267627 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100134g11.9891.mrna
Orig protein idgnl|cribi|Naga_100134g11.9891
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:265362..267627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100134g11gene4595Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25932.1cds4746Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4758rna4758-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4758 ID=rna4758|Name=rna4758|organism=Nannochloropsis gaditana|type=mRNA|length=2077bp
GGTATTGTCAGTACGATCCACATCCTGCCAAGTCCTCATCAACATTGTGT
TGTATGTGAAGTTGCATGGTTGAAGCCATCCGAAGCAATGCTTGTGTGTC
ATAAGCGCCGTCGTCACCTAAAGAAGTTATTTGACCGTTTCTTCATCCCA
CAGGGCAACAGTGCCATGAAAAGAAGCAGGGAAAGTATAATGTGCGCCAG
TCAAGAGGATCCACTAGTCATGCGCTCGACCTGGAGCATAACATTGTTTC
GATCTGTCAACTGCTGTGTCGTGCTTTTTGCTGGTTTCATTCTTGCTGCG
TTGAGTAACATCGACAACATTCGAGGGTCCCGCTCGTGGTACACAACTAC
TCTTTCCGACATAAGAGCGCCTATGGTTCCAGTGGCTCCTTTCCTCTTGA
CTGATCGGGAGTCATTCAAGTCGGAGGAGCTCCACTTTTCGTGGAAAGTC
GACAATCAACTTGAAATTGCAGCCACTACAGAAGCGAATGGGGCGAGAAA
CGTAACGGGCCCTGGAGCAGGTGTAGCCGCTTGCACACTGGTCGTTGACG
GGTATGACATGCAATCATTTGAAGATCGGACAGCAGCGCTTTCCTGCTTG
CGTAACAAGAGCATTGTTATGGTGGGGGACAGTCTGACCAGATATCAATA
CGTAAATCTTGTCAACTTCTTGGAAAATGGCGTATGGGGTGGACCGGACC
CGCAGCTGGAGAACGAGTGTCAGTGGAAGGGGTACCAGCGATTCTACCAG
GGCACCAACGCACGCTTTAATGGAAGGGAGACCTGTGATTGTTACCGTGA
GGAACCTGCGGATCGCCGAGGCAACATCGAAAATCGATACTATCACAACG
AAGTACTGGATGTCTGGGTCACTTTCTTTCTATGGTTCAACCCCGCATGT
GGGCATCAGGGTCACAACCTTACCTGGCTGAACGTCTCCGTGCCTCCGCC
TCGGCTAGATCGGGCTCCGAAACGTTATGGCCAGACACCCGACGTGGATG
AATGGAGGAACTTGTATCGGGAAGGGCGGCATTTCCAAGAGAAGACGTCG
GTGCGGTCTGATGCTTCGGCCATGCCCCTGACTTCCACGCTGCATCTTCT
TGAAGAAAAAGAGGCTTCTTCGATCCCATCTCGGCAAAGAGGCTGCGAGC
CAGGGGCCTGTGACCAAGAGCCGCATTGGGTGCACGACGTGTACGGGCTT
TTCACCAATGTCGTACCGCTCCTCAACCCCGACGTCCTCGTCTTTAACAG
CGGGCACTGGGGCCGCCTGCCCGGGGCGTACGACCTGGAGCGACTGGCTC
AGTCCGCGATAGAAGCAGTCCGAGTATCGAATGGTCGGGTCGTGTACAAG
ACAACGACATGGCCGAGGATTAATGACCCCTTCGCTCCTGAAGACGATTT
GAAGGATTTCTTTCAACGCCAAGGTATCAGCATTCTGGATGCAGGGGCTA
TCACATATCCTGTCGCAGCCCTCGACAACCAACTGGTGAGCACACAAAGC
ACACATTTGTTCTGGGATCGACTTCACTTTTATGCACCCGTATATGCAGG
GCTGAACAAAGTACTTCTGAACTACCTTTGTCCGTCCTGAAGACACGCGA
AAAGTACAGCGTTTGCGGCAACTAGCATAAATAAACAAAATGATCTAAAA
GTAAAGAGCAAGTGGCACTGATTTGCCACGAGGCATATCACATGTTTCCT
TCCGTGCTGTACTTCATATTTGTTCGGCTTTACGATCCGCCTTTCCCGCT
GGAGAAATCCATGATCAAGTGTTCGAAACGTGGATATGACGGCGGGGGCA
GGGGGAAAGGTTCCTTTCAGAAGTGCTCTGCATGATTCATATTCGGGTTG
ACCAGAATTTCTGGCCATCATTAGGAATGTCATATGTCCGTCGTGCTTGG
ACGCTCTGTCATTTTTGGGAAAAGGTGTCAGCGCTTGAAGCGAAAGCAGC
AACAGACGGCGCCAACGTGATACTATGCCCTATGCATGTGAGCATTTTTT
ACGCGGCATGAGTTGCGTTCGACAACGGAACATTGACAATGTTGACAACA
TAAGAATGAAATGACTTTTATTGCCTT
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protein sequence of rna4758

>rna4758-protein ID=rna4758-protein|Name=rna4758|organism=Nannochloropsis gaditana|type=polypeptide|length=239bp
MSAWYDIESVSHSSARRRRAGGDAPSAFSYHVIAPSLPPSTHRYGSHMSA
QVPNTSAQKGNFVASLLTQGRHVLANTCWRHGHLHRRLRHLLDPDAQCRN
RGSRAAAKCSYDVIFGILHCTCYVEGKIMTYKLMPASAVVMAINKFQTRT
VVAQDRIKMACAEKASHLYAPSHEGSRYKIGARMRGYQYQARKTQYKSNF
CDCEAKHNVNTFTKVATSAVKRPKTEDVNMRRPGCVGRM
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mRNA from alignment at CM002464.1:265362..267627-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4758 ID=rna4758|Name=rna4758|organism=Nannochloropsis gaditana|type=mRNA|length=2266bp|location=Sequence derived from alignment at CM002464.1:265362..267627- (Nannochloropsis gaditana)
GTCCAACGCCCTCTGCAACGCCAGACTCAGGGAGGCATCTGCTGCCGCCA
CGCCCTTCTGAGGGAAGACGTGACCCTCCTCAAGCGCCCGGTGGAGGCCC
GGGTATAAAAGATGAAACTCCATGTGAAATTTCCATTTCACGCGGGGGAG
AGTCGACCTGGGTGGGGTGGGAGGGACGATGGTGAGAAAAGGCACGAGCG
GCCGGTCTTTCTCCATAGCCATCAACACGCACTTCCCTATCCGAAGTGGG
ATTTTTAACGTACCATGATTCTATCGGCCGCAGTGGCACGCGTGTCTTGT
CGTGCTTGATTGTCACGACAACATCCCCTCGGCCCTTCCCCTCCGGCAGG
ACCAGCACCTTGTCCGTCAGCAGCTTCTTACCGCCTCCCCCACCAGGTCT
TGAAGAGCGCTGTCCGCCATCTGCCGCCAGGCTTCCGGCAGCTCCGAGAG
CGAGACCATGGTTCCAAGTAAGGCGTCGCGCCTGTCGCCGAAGTCTCCCC
TCTTCACTAGGTAAAGCCGCCTCCTATCGCGGGGGAAGGGCGTGACCTCG
TTGGGATTCTTGACTTCGACGGGCGACACCCACGGCGCCTCCACACCCTC
CATAGCGCTTCCTGTAGATGGAATTTCCCCTTGAAGGGGGCTGTCTCGGG
CACCTGGTGGATGAATTTTTTGAAGAGAGGGTCGACTCGTCAGGCTGTAC
AGGGCGAGGGGGAGGACGCACACGCAATCCCAGTCCTGTCTCAACTCACC
AGCAGATACACGTACTGCACGACGTAAAGATGCGTTGCACTGTCGCCCTT
ATCTACGACGGTGAGGTACTCCCCCACGCCCAGCGCCTGGACTATCTCCG
CTACCCGCCGGATAAGGGCCTGGCCCCGCTGGAAGGGGTCAAGAGCCTCC
GCCCACTGGTTTCTGTATATGTCTGCATGGTATGACATAGAGAGCGTGAG
TCATTCTTCAGCACGAAGACGCAGGGCTGGCGGGGACGCTCCCTCAGCCT
TCTCCTATCACGTTATCGCTCCCTCCCTCCCTCCCTCCACTCACCGTTAC
GGAAGCCACATGTCTGCGCAAGTCCCGAACACATCAGCACAAAAAGGTAA
TTTTGTAGCCTCTTTGCTCACCCAGGGCAGACACGTCTTGGCAAATACGT
GTTGGCGGCATGGGCACCTTCACCGTCGTCTCCGTCACCTTCTCGATCCC
GATGCGCAGTGTCGCAATCGCGGCAGTCGTGCTGCTGCTAAATGCAGTTA
CGATGTCATTTTCGGTATATTACATTGCACTTGTTACGTGGAAGGGAAGA
TAATGACCTACAAATTAATGCCAGCGTCCGCCGTCGTGATGGCCATCAAT
AAGTTTCAAACGCGCACAGTCGTAGCTCAAGATCGCATCAAGATGGCATG
CGCGGAAAAGGCTTCGCACCTTTATGCGCCGTCACATGAAGGTTCAAGAT
ACAAGATCGGTGCGAGAATGAGAGGATATCAGTATCAAGCAAGGAAAACA
CAATATAAAAGCAACTTCTGCGACTGCGAGGCAAAGCACAATGTAAACAC
ATTCACGAAGGTGGCAACTTCGGCTGTCAAACGTCCCAAGACGGAGGATG
TCAACATGAGGCGACCCGGATGTGTGGGGCGAATGTAGAGGTGACCCCGC
TTGCTGCCGCTCGCCATCGCCGTCGAAGGTTTTCGCCGCTTTTTTTCCCC
TTGTTACATTGCTGTTTGCCAGCGAACTTTTGTGAGAAGAGAAATCAACC
CTCTAGCAACTTTTTTTGTGTACGGTGAAAGGAATCTTCACATCTGTAGC
ATTTGCTGTGGCAACATTGGTGGCGAATGCTTGATTGCCGCCTTCCAAGA
GAGCCAAGGACGACACAGTGTCTTAAGGCAATAAAAGTCATTTCATTCTT
ATGTTGTCAACATTGTCAATGTTCCGTTGTCGAACGCAACTCATGCCGCG
TAAAAAATGCTCACATGCATAGGGCATAGTATCACGTTGGCGCCGTCTGT
TGCTGCTTTCGCTTCAAGCGCTGACACCTTTTCCCAAAAATGACAGAGCG
TCCAAGCACGACGGACATATGACATTCCTAATGATGGCCAGAAATTCTGG
TCAACCCGAATATGAATCATGCAGAGCACTTCTGAAAGGAACCTTTCCCC
CTGCCCCCGCCGTCATATCCACGTTTCGAACACTTGATCATGGATTTCTC
CAGCGGGAAAGGCGGATCGTAAAGCCGAACAAATATGAAGTACAGCACGG
AAGGAAACATGTGATA
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Coding sequence (CDS) from alignment at CM002464.1:265362..267627-

>rna4758 ID=rna4758|Name=rna4758|organism=Nannochloropsis gaditana|type=CDS|length=720bp|location=Sequence derived from alignment at CM002464.1:265362..267627- (Nannochloropsis gaditana)
ATGTCTGCATGGTATGACATAGAGAGCGTGAGTCATTCTTCAGCACGAAG
ACGCAGGGCTGGCGGGGACGCTCCCTCAGCCTTCTCCTATCACGTTATCG
CTCCCTCCCTCCCTCCCTCCACTCACCGTTACGGAAGCCACATGTCTGCG
CAAGTCCCGAACACATCAGCACAAAAAGGTAATTTTGTAGCCTCTTTGCT
CACCCAGGGCAGACACGTCTTGGCAAATACGTGTTGGCGGCATGGGCACC
TTCACCGTCGTCTCCGTCACCTTCTCGATCCCGATGCGCAGTGTCGCAAT
CGCGGCAGTCGTGCTGCTGCTAAATGCAGTTACGATGTCATTTTCGGTAT
ATTACATTGCACTTGTTACGTGGAAGGGAAGATAATGACCTACAAATTAA
TGCCAGCGTCCGCCGTCGTGATGGCCATCAATAAGTTTCAAACGCGCACA
GTCGTAGCTCAAGATCGCATCAAGATGGCATGCGCGGAAAAGGCTTCGCA
CCTTTATGCGCCGTCACATGAAGGTTCAAGATACAAGATCGGTGCGAGAA
TGAGAGGATATCAGTATCAAGCAAGGAAAACACAATATAAAAGCAACTTC
TGCGACTGCGAGGCAAAGCACAATGTAAACACATTCACGAAGGTGGCAAC
TTCGGCTGTCAAACGTCCCAAGACGGAGGATGTCAACATGAGGCGACCCG
GATGTGTGGGGCGAATGTAG
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Synonyms
Publications