rna4744, rna4744 (mRNA) Nannochloropsis gaditana

Overview
Namerna4744
Unique Namerna4744
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length390
Alignment locationCM002464.1:235897..237274 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100469g7.6986.mrna
Orig protein idgnl|cribi|Naga_100469g7.6986
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:235897..237274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100469g7gene4581Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4744rna4744-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25938.1cds4732Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4744 ID=rna4744|Name=rna4744|organism=Nannochloropsis gaditana|type=mRNA|length=390bp
ATGACCATCGCCATTCCGGGAACCACGGGCCACCATCCCTCCTTCTCCCC
CTCCTCCCCTTCCTCCCCCGCCCCTTCCCCTTCCCTTCCCCCGGCCCCTG
GTCGGCCGTCCCCCCCTTCCTCCTCCACCGCCGCCCAGACAGTTGCCCCT
TCCCACGGGGCCCGACCCGAAGGGGAGCACGCCGGCTTGCTCCACACCTT
CTTACGTTTCTGCAACGGCCAAGGCCCCCGGGACGTGCACATCCGCTTAA
AACGCTACCCCCTCGCGGAAGTGATGGGGGACCCGCACTGGCTCGACAAC
CGGTGGGCCGAAAAAGACCGAGTCTTGACCTACTTCGGCCGCCACGCGGC
GCGGAGACGTCCTTCTTGGCCTTGGTCCGGCTGTGTTTGA
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protein sequence of rna4744

>rna4744-protein ID=rna4744-protein|Name=rna4744|organism=Nannochloropsis gaditana|type=polypeptide|length=232bp
QGEMRGFQPPGREGGREGGREGGVGKISMLSSSTNGKGGSSLKPYSRGEE
GSEEEGGGGGGEGGRPCFYNGTSGGVGRGTALPSSSELEEEEEEEEGGEA
RAFRSGSDEGGGGEGGGGGGVTGGNGRESGWAHAFSMGSSMDLRGEEGGE
KGMVEEELVPIPTASEVGIAAAPDEAPSLPEGGEGRRGGRAGGGEDGHSP
KDSGTNGLEEGGSTEETAAGGEGGEVPAARLE
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mRNA from alignment at CM002464.1:235897..237274+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4744 ID=rna4744|Name=rna4744|organism=Nannochloropsis gaditana|type=mRNA|length=1378bp|location=Sequence derived from alignment at CM002464.1:235897..237274+ (Nannochloropsis gaditana)
CGCAGGGGGAGATGCGAGGCTTCCAACCGCCGggacgtgagggagggagg
gagggagggagggagggaggagtaggTAAAATTTCGATGttgagcagcag
caccaacggaaaggggggaagttCGCTGAAACCTTAcagcagaggagagg
aagggagtgaggaggagggaggaggaggaggaggggagggaggaaggccg
tgTTTTTACAACGGAACCTCGGGAggtgtggggaggggaacggctcttcc
ctcctcttcagagctagaggaggaagaggaggaagaggagggaggggagg
caagggctTTCAGAAGTGGAAgtgatgaaggaggagggggagaaggggga
ggaggcggaggagtgaCGGGGGGAAACGGGCGCGAAAGCGGGTGGGCGCA
CGCTTTTTCCATGGGCTCGTCGATGGAtttgaggggggaggaaggggggg
agaaggggatggtggaagaggagcttgtTCCCATCCCGACGGCGTCGGAA
GTAGGGATAGCCGCAGCCCCGGACGAAGCCCCTTCGTtgcccgagggagg
agaagggaggcggggagggagggcgggcgggggggaggacgggcacaGCC
CCAAGGACTCTGGGACGAAtggtctggaggaggggggctcgacggaggag
acggcggcaggcggggaagggggggaagttcCTGCCGCTCGACTCGAGTA
GCAGAGCGTGGGGACTGTCACCTGCctgggcaagagggaggagggaggga
gggagggagggagggagggagggagggagggagaaaggcttCAAGACGAT
TTGTGGTATAGCTTGGACCGGCAAGTCTTGTTTTTGGGAGGGAGTTTTGA
TGCTCGTCGTGCATGTAAGCACATGTTTCTTCTTACGTCCGCAGCAGTCG
TGACAATTTCAGCAGCACGAGCAGGCAGGCGacaagagggggaagaggag
gggagaggacgggggagggaggggggcacgcTGACGAACCGGCGATGGAT
GTCCCATTTTGATGCGTTTTGATTGACAGAATATTCTAGAATGTACAAAA
GTTGAAGTTAAAAGTCAAGAcagatggggaaggggagaaggaggacgaat
cAGGAGATTTCTGGGcagacgagggcgggagaggagggcgtgagggaggg
gtatATGGGGTCTGCCCTTGGCAGATAGGGACGTGGccaggatgagggag
ggacggagggggaaagtatgaaaaggagggagggacgcttAGCCAGCTCG
ATGTCGATGCTTGGtcgtctttcttctttcaaaTGGAATTTATGTGTGCC
ATGAGCTTATCTTCACAACAACAGCTGGGCTCAGCTCTTTTGAAGCCTTT
GCTTTGCTATTCCTTGGACGAAGTCAGC
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Coding sequence (CDS) from alignment at CM002464.1:235897..237274+

>rna4744 ID=rna4744|Name=rna4744|organism=Nannochloropsis gaditana|type=CDS|length=699bp|location=Sequence derived from alignment at CM002464.1:235897..237274+ (Nannochloropsis gaditana)
CAGGGGGAGATGCGAGGCTTCCAACCGCCGggacgtgagggagggaggga
gggagggagggagggaggagtaggTAAAATTTCGATGttgagcagcagca
ccaacggaaaggggggaagttCGCTGAAACCTTAcagcagaggagaggaa
gggagtgaggaggagggaggaggaggaggaggggagggaggaaggccgtg
TTTTTACAACGGAACCTCGGGAggtgtggggaggggaacggctcttccct
cctcttcagagctagaggaggaagaggaggaagaggagggaggggaggca
agggctTTCAGAAGTGGAAgtgatgaaggaggagggggagaagggggagg
aggcggaggagtgaCGGGGGGAAACGGGCGCGAAAGCGGGTGGGCGCACG
CTTTTTCCATGGGCTCGTCGATGGAtttgaggggggaggaagggggggag
aaggggatggtggaagaggagcttgtTCCCATCCCGACGGCGTCGGAAGT
AGGGATAGCCGCAGCCCCGGACGAAGCCCCTTCGTtgcccgagggaggag
aagggaggcggggagggagggcgggcgggggggaggacgggcacaGCCCC
AAGGACTCTGGGACGAAtggtctggaggaggggggctcgacggaggagac
ggcggcaggcggggaagggggggaagttcCTGCCGCTCGACTCGAGTAG
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Synonyms
Publications