rna4739, rna4739 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4739
Unique Name	rna4739
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	899
Alignment location	CM002464.1:221646..223788 -

Link to JBrowse

Properties


Property Name	Value
Product	3-hydroxyisobutyrate dehydrogenase
Orig transcript id	gnl\|cribi\|Naga_100721g4.2302.mrna
Orig protein id	gnl\|cribi\|Naga_100721g4.2302
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:221646..223788 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100721g4	gene4576	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4739	rna4739-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25945.1	cds4727	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:221646..223788-
coding sequence from alignment at CM002464.1:221646..223788-

mRNA sequence

>rna4739 ID=rna4739|Name=rna4739|organism=Nannochloropsis gaditana|type=mRNA|length=899bp
GAGTCAAGGGTTGACTTACCGCGTGGAGGGTGCTTGTATGGCCGTGTCTT
TCTATCCCTACGTCGTCGGCAAGATTGCCAACAGCCCTTCCCCCGTCCGC
TTTCTGTTTTCCCGTCAAACACAGCAAGACCTATGTCTTCCCATCTCTTG
GCCACAGCCAGGCTATGTTGCCGGCGTGGGGGGAATGTGCGACCGGTGTA
TGGGTGGCACATGACGGCGGGTGGGCCGCAAGCAGCTCTTGCGGCATCAA
TAGGCGCCAGGGCATCTTATCATAAGACAGCTACAGGTCCTGTCGGACTA
GCAGTGAACCCGAATGCCCGCGAGGACTTCATCAAGCAACAGAAGGAGAT
ATTGGAGAAAATAGAGCGGTTCCCCCCCGAGGCCGAGTACAGGAAAGTGC
TCACGTCCATCGCCAGCTACCGTCTCGCCAAGGCGGAGGAAATCGAGGAT
CCGCGAGCCTTGGAGGAGGCCCTGGACGACGGGCAGTTGGAGGAACTGCT
GGTGCAGGGCGAGAACGAGTTGATGTTGATGGAGGACTACAAGGAATGGA
AGTATTGGGAAACGGAGGAGGTGAAGGCGGCCTTTCGGGATTAAAGGAAA
AGCAGGGGAAGAAAAGGCAGGGGCGGCAGGGGAAGTGGGGGATGGTAAGC
ATTTGCCAGACGGGGCGGAGGAGAGAGGAAGGAGAGAAGGGCAGGAAGGG
AGGGAGGAAAGGGGGGGGGAGGGAAGTGGGAGATAGGGGTGGAATGGAGG
CGATGGATTTCGAGGGATACGATCTGCGTCTGCTTGCCTGTGCTTTACAG
GAAAGCTGGCGAAGGGATGCGTCAGGAGTATGCGAGGGAGGGAGGCAGGG
AGGGAGGGAGAGAGGGAGGGGAGGAAGCGAGGGCATTGGAGTGAGGAAA

protein sequence of rna4739

>rna4739-protein ID=rna4739-protein|Name=rna4739|organism=Nannochloropsis gaditana|type=polypeptide|length=320bp
MIPASGIIISPATTRIGWVGVGIMGCSMVTHLLNAGYQCTVYNRTPSKCL
PVQAKGAVVASSPHAVAAASDVVFVIVGFPSDVRNVVLGTEGILKGLKAG
GVLVDCTTSTPSLAQEIYTTGQAQGVSTVDAPVSGGDVGARNAALSFMVG
GDKQVVDGLHPLWTLMGKNMRYMGGPGKGQHTKMVNQILIANTMMGVCEG
LMYAEKAGLDLTETINAVGAGAAGSFSINNLGPRMVARDFAPGFYVEHFL
KDLGIALDEARRMDLAVPGMAAAYQMYVALKAQGGGRLGTQALLLALERL
NGKEGVERLNGKEGEAGKGK

mRNA from alignment at CM002464.1:221646..223788-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4739 ID=rna4739|Name=rna4739|organism=Nannochloropsis gaditana|type=mRNA|length=2143bp|location=Sequence derived from alignment at CM002464.1:221646..223788- (Nannochloropsis gaditana)
CGTCATCATCAACCAGCTCGCTAGGACCTTGGACCTGGTCTTTAGCCACC
ATGGGTAACAGAACCTGCTCATGCATTACGGATGAAATAAAGCGAGTTCA
GGTAACCTGTGTGATATATCAGCCACAGCATCCACTTTCCCCTTCGAAAT
AAGATTGGACCTGTGAAAACTATTTCCTCCAAGAGAAAATTATATAAGAT
CCCTTGGAAAATTAACCTCCTCCCATGCTAGGTCGTGCGTCGTCTCAAAG
AAACGGGCAATTAAGCGTTTCATGGGGTCACCCCCGCAGTCCTCCTCGTT
TCCGCAGGCCTATTGTTGAGAGCGAATCCTACACATGCTCCGCTGCCTCA
AAAGAATTAGTCAAATGCCTCTCGTGCGGGTTTTGTACATGAGCACGCGT
CTGTCGTGGTCAACCTCCCCTGAAGCTTTGGTCACCGTCCCGGGCCTTTT
TTTATCACGAAGAGAGTTGGAGCATGCAATTTCTGGCCGCGCGCATCGAG
AAAGCACGAAAAATTGATACGTACCTCAATATTGATGTGTAGGGAATCAG
CCCGGGCGTGATTGAAAGCTTGTGCATAGCTTGCCTTAGAGTCCGGTGGC
ACGCTCGAAAAGTCACAGATGATACCGGCATCGGGAATTATCATTTCTCC
CGCAACCACACGCATCGGCTGGGTTGGGGTTGGTATTATGGGCTGTTCCA
TGGTGACCCATCTCCTCAATGCGGGGTACCAGTGCACAGTCTATAACCGG
ACGCCGAGTAAGTGCCTTCCCGTTCAAGCCAAGGGTGCGGTAGTGGCAAG
CTCCCCCCACGCAGTCGCTGCTGCCTCTGACGTTGTCTTCGTCATCGTTG
GGTTCCCTTCAGACGTTCGAAACGTCGTTTTGGGCACGGAGGGCATTTTG
AAAGGGTTGAAAGCTGGCGGTGTCCTGGTCGATTGCACGACAAGCACACC
CAGCCTGGCCCAAGAGATATACACCACAGGGCAGGCGCAAGGAGTGTCCA
CCGTGGACGCACCCGTCTCCGGGGGTGACGTAGGCGCCCGCAATGCCGCC
TTGTCATTTATGGTGGGGGGGGACAAACAGGTCGTCGACGGCCTGCACCC
GTTGTGGACATTAATGGGCAAAAACATGCGGTACATGGGCGGGCCGGGAA
AAGGACAGCACACCAAGATGGTGAACCAGATATTGATCGCCAATACCATG
ATGGGTGAGAAAAGAATGGGCAAATTGGCCGTCCGCCTTTGGCCATGTCT
TGGGGGTGGCTGGGGAGTCCTTGCACGGCGTCTACTGGAGGTGCTTCCAC
CTACCTATCTTCCCTTCTCCTCACTCCACCCTACAACCCGTCATTTGGCC
CGTCACAGGTGTCTGCGAAGGGCTCATGTACGCCGAGAAGGCGGGTCTGG
ACCTGACTGAGACGATCAACGCCGTGGGTGCCGGCGCGGCGGGGAGCTTT
AGCATCAACAATTTGGGGCCGCGTATGGTGCGTCGCAGGAGCCGCCTTGA
CAGTGATGTGCATGCGCCTGTGTGGGAAGATGTGGGCATCAAAGGGCGTC
CGTAAGGGCACGTTGAGCCGGTGGCAATGCTCTCCACTGTTTACACTCAA
GCCTCCTTGACGGGACACGTTCTCCCCCCCCAAAAAAACGCACGCCAACG
GGCGTGGCACCGCACCTTTACTCTGACCTTCCCTCTTTCCCATTCTCCCA
CCCACCCACCCCTACGGGATTCGACAACGCCAGGTGGCCCGCGACTTTGC
CCCCGGTTTCTACGTGGAACATTTTCTCAAGGACCTAGGCATCGCCTTGG
ACGAAGCACGGCGGATGGACCTGGCGGTCCCGGGCATGGCTGCTGCCTAC
CAGATGTATGTAGCCTTGAAAGCGCAGGGAGGGGGGAGGTTGGGGACACA
AGCCTTGCTTCTGGCCTTGGAGCGATTGAATGGGAAGGAAGGGGTGGAGC
GATTGAATGGGAAGGAAGGGGAGGCGGGGAAAGGGAAGTGATAAGGGGGA
GGAAGGCCCGTGGGGGAGGTGTGGAGCACAATTACTGTGATGGATGAACA
GAGGCTCGGGGGCCAGATGGAAGCTGCCAGGGCAATTTGGAAGGCAAACG
GGCACAGGGCTCTCAGATTTCATTGCAACTACGAGATTCTTCC

Coding sequence (CDS) from alignment at CM002464.1:221646..223788-

>rna4739 ID=rna4739|Name=rna4739|organism=Nannochloropsis gaditana|type=CDS|length=2889bp|location=Sequence derived from alignment at CM002464.1:221646..223788- (Nannochloropsis gaditana)
GTGGCCCGCGACTTTGCCCCCGGTTTCTACGTGGAACATTTTCTCAAGGA
CCTAGGCATCGCCTTGGACGAAGCACGGCGGATGGACCTGGCGGTCCCGG
GCATGGCTGCTGCCTACCAGATGTATGTAGCCTTGAAAGCGCAGGGAGGG
GGGAGGTTGGGGACACAAGCCTTGCTTCTGGCCTTGGAGCGATTGAATGG
GAAGGAAGGGGTGGAGCGATTGAATGGGAAGGAAGGGGAGGCGGGGAAAG
GGAAGTGAGTGTCTGCGAAGGGCTCATGTACGCCGAGAAGGCGGGTCTGG
ACCTGACTGAGACGATCAACGCCGTGGGTGCCGGCGCGGCGGGGAGCTTT
AGCATCAACAATTTGGGGCCGCGTATGATGATACCGGCATCGGGAATTAT
CATTTCTCCCGCAACCACACGCATCGGCTGGGTTGGGGTTGGTATTATGG
GCTGTTCCATGGTGACCCATCTCCTCAATGCGGGGTACCAGTGCACAGTC
TATAACCGGACGCCGAGTAAGTGCCTTCCCGTTCAAGCCAAGGGTGCGGT
AGTGGCAAGCTCCCCCCACGCAGTCGCTGCTGCCTCTGACGTTGTCTTCG
TCATCGTTGGGTTCCCTTCAGACGTTCGAAACGTCGTTTTGGGCACGGAG
GGCATTTTGAAAGGGTTGAAAGCTGGCGGTGTCCTGGTCGATTGCACGAC
AAGCACACCCAGCCTGGCCCAAGAGATATACACCACAGGGCAGGCGCAAG
GAGTGTCCACCGTGGACGCACCCGTCTCCGGGGGTGACGTAGGCGCCCGC
AATGCCGCCTTGTCATTTATGGTGGGGGGGGACAAACAGGTCGTCGACGG
CCTGCACCCGTTGTGGACATTAATGGGCAAAAACATGCGGTACATGGGCG
GGCCGGGAAAAGGACAGCACACCAAGATGGTGAACCAGATATTGATCGCC
AATACCATGATGGGTGGCCCGCGACTTTGCCCCCGGTTTCTACGTGGAAC
ATTTTCTCAAGGACCTAGGCATCGCCTTGGACGAAGCACGGCGGATGGAC
CTGGCGGTCCCGGGCATGGCTGCTGCCTACCAGATGTATGTAGCCTTGAA
AGCGCAGGGAGGGGGGAGGTTGGGGACACAAGCCTTGCTTCTGGCCTTGG
AGCGATTGAATGGGAAGGAAGGGGTGGAGCGATTGAATGGGAAGGAAGGG
GAGGCGGGGAAAGGGAAGTGAGTGTCTGCGAAGGGCTCATGTACGCCGAG
AAGGCGGGTCTGGACCTGACTGAGACGATCAACGCCGTGGGTGCCGGCGC
GGCGGGGAGCTTTAGCATCAACAATTTGGGGCCGCGTATGATGATACCGG
CATCGGGAATTATCATTTCTCCCGCAACCACACGCATCGGCTGGGTTGGG
GTTGGTATTATGGGCTGTTCCATGGTGACCCATCTCCTCAATGCGGGGTA
CCAGTGCACAGTCTATAACCGGACGCCGAGTAAGTGCCTTCCCGTTCAAG
CCAAGGGTGCGGTAGTGGCAAGCTCCCCCCACGCAGTCGCTGCTGCCTCT
GACGTTGTCTTCGTCATCGTTGGGTTCCCTTCAGACGTTCGAAACGTCGT
TTTGGGCACGGAGGGCATTTTGAAAGGGTTGAAAGCTGGCGGTGTCCTGG
TCGATTGCACGACAAGCACACCCAGCCTGGCCCAAGAGATATACACCACA
GGGCAGGCGCAAGGAGTGTCCACCGTGGACGCACCCGTCTCCGGGGGTGA
CGTAGGCGCCCGCAATGCCGCCTTGTCATTTATGGTGGGGGGGGACAAAC
AGGTCGTCGACGGCCTGCACCCGTTGTGGACATTAATGGGCAAAAACATG
CGGTACATGGGCGGGCCGGGAAAAGGACAGCACACCAAGATGGTGAACCA
GATATTGATCGCCAATACCATGATGGGTGGCCCGCGACTTTGCCCCCGGT
TTCTACGTGGAACATTTTCTCAAGGACCTAGGCATCGCCTTGGACGAAGC
ACGGCGGATGGACCTGGCGGTCCCGGGCATGGCTGCTGCCTACCAGATGT
ATGTAGCCTTGAAAGCGCAGGGAGGGGGGAGGTTGGGGACACAAGCCTTG
CTTCTGGCCTTGGAGCGATTGAATGGGAAGGAAGGGGTGGAGCGATTGAA
TGGGAAGGAAGGGGAGGCGGGGAAAGGGAAGTGAGTGTCTGCGAAGGGCT
CATGTACGCCGAGAAGGCGGGTCTGGACCTGACTGAGACGATCAACGCCG
TGGGTGCCGGCGCGGCGGGGAGCTTTAGCATCAACAATTTGGGGCCGCGT
ATGATGATACCGGCATCGGGAATTATCATTTCTCCCGCAACCACACGCAT
CGGCTGGGTTGGGGTTGGTATTATGGGCTGTTCCATGGTGACCCATCTCC
TCAATGCGGGGTACCAGTGCACAGTCTATAACCGGACGCCGAGTAAGTGC
CTTCCCGTTCAAGCCAAGGGTGCGGTAGTGGCAAGCTCCCCCCACGCAGT
CGCTGCTGCCTCTGACGTTGTCTTCGTCATCGTTGGGTTCCCTTCAGACG
TTCGAAACGTCGTTTTGGGCACGGAGGGCATTTTGAAAGGGTTGAAAGCT
GGCGGTGTCCTGGTCGATTGCACGACAAGCACACCCAGCCTGGCCCAAGA
GATATACACCACAGGGCAGGCGCAAGGAGTGTCCACCGTGGACGCACCCG
TCTCCGGGGGTGACGTAGGCGCCCGCAATGCCGCCTTGTCATTTATGGTG
GGGGGGGACAAACAGGTCGTCGACGGCCTGCACCCGTTGTGGACATTAAT
GGGCAAAAACATGCGGTACATGGGCGGGCCGGGAAAAGGACAGCACACCA
AGATGGTGAACCAGATATTGATCGCCAATACCATGATGG

Synonyms

Publications