rna4733, rna4733 (mRNA) Nannochloropsis gaditana

Overview
Namerna4733
Unique Namerna4733
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length495
Alignment locationCM002464.1:208322..210255 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101265g1.5682.mrna
Orig protein idgnl|cribi|Naga_101265g1.5682
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:208322..210255 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101265g1gene4570Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4733rna4733-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25952.1cds4721Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4733 ID=rna4733|Name=rna4733|organism=Nannochloropsis gaditana|type=mRNA|length=495bp
ATGTTCAACACCTTCTGGTCGGTGATCAAGTACTCGATGCCCGAACGCGT
CCGGAACAAGGTGACCATGTGCAATAACGAGGCAGCTCTCCTGGAGCACG
TGACGCCGGAACAGCTCCTGACGAGCCTGGGGGGCAAGGAGGAGTGGGAC
CCGACCACGGCTGAAATTCAACCAATCTACATGTTTAGAAACGGAACGCT
CTTGAGAGACTTTGTGCAGGCGGGCGACTTGGGGACGGAGGGTGCGGAGG
ACGGCTGCCTGGGACGACATGCGCCGGACCTGTGCGGTTCGTCGCAAGGC
GAGGCCACCGGAAGAGCAGTAGAGGAGCAAGACACCGTGTCTGAGTGTTC
ACATGCGAGGAGGAGCTTTGATCGATTGAATTTTATATTTGAATTGGAAA
AACTCAGGGGTATTCCCAGGGTAAGATTTGCCCCCTTCGCAACGCTGATA
TACGGCAGAGAGATCACACTTCCAACCACATCACCAAGCCACTGA
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protein sequence of rna4733

>rna4733-protein ID=rna4733-protein|Name=rna4733|organism=Nannochloropsis gaditana|type=polypeptide|length=599bp
MTAANLLSRPWNLARLRSMFKAYSTHGVAGGRRGRVPARGDRYGTIHVPR
LGHTRVCSTISGIPTSTPDSEQQKPKRHSQIEIQDAVMTGEDVDSIRSLK
RRDMQARQREEDEKNTRLQSLLEENGNCRAAARYLMEEMLSIAPQGEEQL
RAENLDAAKAPVPPRGDLLHRMIVNLGEIEEVDTAVRILTASTAVTHPLD
DKTRGSEACKRQAGPIVPLRSSRRGRRPRPLGAIIHSNVRPSPSPSPSTS
PSTFCSPSINPSLKRATLLCYHHLLTLCLRLQRLDLALLLFQSAASRSIL
FDLPTFNHLLASLPPSLYSPSLLSSLLAYPISVGLGPTSLTYSCAVWAAL
QARDFPQVRKILRGMHASRMPVPVEMWLAVYAATLEGREGGGTAGREEDG
AALMEQLHRQAAMKLEGVMEVMLAKISADVLSDGAGEGVMEGEEDEGEEW
EEGEEEEEGPGGPAALGAPPPSGGGGGGRGRGGAGRGMGGGGGWVGGEVS
GEDGLMGGFRGGGWAGGGGRGGALAGMGGSGRWPLVTGTYVRGIFSAGAE
GREGEWGEGEEEEGEEEEEEEEEEEEEEEEAPADGPFWTSGRRCGQRLR
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mRNA from alignment at CM002464.1:208322..210255+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4733 ID=rna4733|Name=rna4733|organism=Nannochloropsis gaditana|type=mRNA|length=1934bp|location=Sequence derived from alignment at CM002464.1:208322..210255+ (Nannochloropsis gaditana)
GCTCATGTTATTCCATTTCACGATAATGCTTATGCTCCACCTTTTTGTCA
AAGCCAGGCACGTTTCCACTCACGGCGTTCCGCCGCGCCGGCGCAACGAC
GAACGAGCCATCAGGGGATCGACTGAGGGGAGTTCAAGATGACCGCGGCC
AACTTGCTTTCCCGGCCATGGAACCTGGCGAGGTTGCGTTCCATGTTTAA
GGCTTACTCAACTCATGGCgttgcaggaggaagacgtggcagAGTGCCTG
CGCGGGGAGATAGATACGGAACGATTCATGTCCCGCGTCTGGGACACACC
AGAGTATGCAGCACCATCTCGGGCATACCAACCTCGACACCTGACTCAGA
GCAACAAAAACCGAAACGTCATAGCCAGATAGAAATTCAGGATGCAGTCA
TGACTGGGGAAGATGTGGATAGCATTCGAAGTCTGAAGAGACGAGATATG
CAAGCACGccaaagggaagaggacgagaagaatACGCGACTGCAATCTCT
CCTAGAAGAGAACGGGAATTGCCGTGCTGCTGCACGCTatttgatggagg
agatgctaTCGATCGCCCCacaaggagaagaacaaTTAAGGGCGGAAAAT
TTGGATGCGGCAAAAGCGCCAGTACCCCCCCGCGGAGATCTTTTACATCG
GATGATCGTTAATCTGGGTGAAATCGAAGAGGTAGACACTGCAGTCCGCA
TTCTCACTGCCAGCACCGCTGTAACTCACCCTCTCGACGACAAGACCCGC
GGCAGCGAAGCTTGCAAGCGCCAGGCGGGCCCCATTGTACCTTTAAGAAG
CTCGAGGCGAGGTCgacggccccggcccctggGAGCCATCATCCATTCCA
ACgttcgcccctctccctccccctccccctccacctcgccctctaCTTTT
TGTTCCCCTTCGATCAACCCTTCCCTCAAGCGCGCTACCCTTCTGTGTTA
CCACCATTTACTCACCCTTTGTCTTCGCCTTCAGCGTCTTGACTtggccc
tgctcctcttccagtccGCTGCGTCCCGAtccatcctcttcgatcTGCCC
ACCTTCAaccacctcctcgcctccctcccaccttccctctactcgccgtc
cctcctctcctccctcttggctTACCCCATCTCCGTAGGCTTGGGCCCCA
CCTCTCTCACCTATTCTTGCGCGGTATGGGCGGCCCTCCAGGCGAGAGAT
TTCCCACAGGTCAGGAAAATTCTCCGGGGGATGCACGCGTCTCGTATGCC
TGTCCCTGTGGAGATGTGGCTGGCGGTGTACGCTGCCACtttggaagggc
gggagggaggagggacagcagggagggaggaggatggcgccGCGCTGATG
GAGCAGTTGCACCGGCAGGCGGCGATGAAATTGGAAGGAGTGATGGAAGT
GATGCTGGCAAAGATTTCGGCGGACGTCTTGTCGGacggggcgggagaag
gggtgatggaaggggaggaggacgagggggaggagtgggaggaaggggag
gaggaggaggaagggcccgGGGGGCCGGCGGCTCTGGgtgcgccccctcc
ttctggaggaggaggaggaggaagaggaaggggaggggctgggagaggga
tgggaggaggagggggttgggtggggggagaggtgtcgggggaggacggg
ctgaTGGGCGGCTTTCGAGGTGGAGGTtgggccggagggggcggtagagg
aggggcgttggcggggatggggggatCGGGACGCTGGCCGTTGGTGACGG
GCACGTACGTGCGGGGAATTTTCTCGGCtggggcggaaggaagggaggga
gagtggggggaaggggaggaggaggagggggaggaagaggaggaggagga
ggaagaggaggaggaagaggaggaggaagcccctGCGGATGGCCCCTTCT
GGACGAGCGGGAGGCGATGCGGTCAACGTTTGCG
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Coding sequence (CDS) from alignment at CM002464.1:208322..210255+

>rna4733 ID=rna4733|Name=rna4733|organism=Nannochloropsis gaditana|type=CDS|length=1796bp|location=Sequence derived from alignment at CM002464.1:208322..210255+ (Nannochloropsis gaditana)
ATGACCGCGGCCAACTTGCTTTCCCGGCCATGGAACCTGGCGAGGTTGCG
TTCCATGTTTAAGGCTTACTCAACTCATGGCgttgcaggaggaagacgtg
gcagAGTGCCTGCGCGGGGAGATAGATACGGAACGATTCATGTCCCGCGT
CTGGGACACACCAGAGTATGCAGCACCATCTCGGGCATACCAACCTCGAC
ACCTGACTCAGAGCAACAAAAACCGAAACGTCATAGCCAGATAGAAATTC
AGGATGCAGTCATGACTGGGGAAGATGTGGATAGCATTCGAAGTCTGAAG
AGACGAGATATGCAAGCACGccaaagggaagaggacgagaagaatACGCG
ACTGCAATCTCTCCTAGAAGAGAACGGGAATTGCCGTGCTGCTGCACGCT
atttgatggaggagatgctaTCGATCGCCCCacaaggagaagaacaaTTA
AGGGCGGAAAATTTGGATGCGGCAAAAGCGCCAGTACCCCCCCGCGGAGA
TCTTTTACATCGGATGATCGTTAATCTGGGTGAAATCGAAGAGGTAGACA
CTGCAGTCCGCATTCTCACTGCCAGCACCGCTGTAACTCACCCTCTCGAC
GACAAGACCCGCGGCAGCGAAGCTTGCAAGCGCCAGGCGGGCCCCATTGT
ACCTTTAAGAAGCTCGAGGCGAGGTCgacggccccggcccctggGAGCCA
TCATCCATTCCAACgttcgcccctctccctccccctccccctccacctcg
ccctctaCTTTTTGTTCCCCTTCGATCAACCCTTCCCTCAAGCGCGCTAC
CCTTCTGTGTTACCACCATTTACTCACCCTTTGTCTTCGCCTTCAGCGTC
TTGACTtggccctgctcctcttccagtccGCTGCGTCCCGAtccatcctc
ttcgatcTGCCCACCTTCAaccacctcctcgcctccctcccaccttccct
ctactcgccgtccctcctctcctccctcttggctTACCCCATCTCCGTAG
GCTTGGGCCCCACCTCTCTCACCTATTCTTGCGCGGTATGGGCGGCCCTC
CAGGCGAGAGATTTCCCACAGGTCAGGAAAATTCTCCGGGGGATGCACGC
GTCTCGTATGCCTGTCCCTGTGGAGATGTGGCTGGCGGTGTACGCTGCCA
Ctttggaagggcgggagggaggagggacagcagggagggaggaggatggc
gccGCGCTGATGGAGCAGTTGCACCGGCAGGCGGCGATGAAATTGGAAGG
AGTGATGGAAGTGATGCTGGCAAAGATTTCGGCGGACGTCTTGTCGGacg
gggcgggagaaggggtgatggaaggggaggaggacgagggggaggagtgg
gaggaaggggaggaggaggaggaagggcccgGGGGGCCGGCGGCTCTGGg
tgcgccccctccttctggaggaggaggaggaggaagaggaaggggagggg
ctgggagagggatgggaggaggagggggttgggtggggggagaggtgtcg
ggggaggacgggctgaTGGGCGGCTTTCGAGGTGGAGGTtgggccggagg
gggcggtagaggaggggcgttggcggggatggggggatCGGGACGCTGGC
CGTTGGTGACGGGCACGTACGTGCGGGGAATTTTCTCGGCtggggcggaa
ggaagggagggagagtggggggaaggggaggaggaggagggggaggaaga
ggaggaggaggaggaagaggaggaggaagaggaggaggaagcccctGCGG
ATGGCCCCTTCTGGACGAGCGGGAGGCGATGCGGTCAACGTTTGCG
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Synonyms
Publications