rna4731, rna4731 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4731
Unique Name	rna4731
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1037
Alignment location	CM002464.1:201306..202971 +

Link to JBrowse

Properties


Property Name	Value
Product	proteasome subunit alpha type-6
Orig transcript id	gnl\|cribi\|Naga_100809g1.4760.mrna
Orig protein id	gnl\|cribi\|Naga_100809g1.4760
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:201306..202971 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100809g1	gene4568	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4731	rna4731-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25954.1	cds4719	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:201306..202971+
coding sequence from alignment at CM002464.1:201306..202971+

mRNA sequence

>rna4731 ID=rna4731|Name=rna4731|organism=Nannochloropsis gaditana|type=mRNA|length=1037bp
GGGAGCGGGCCGCACCTCGACCTCGTCTCCCCCCCCCGTCTGGCCCAACT
CCCTCAGGGTCTGGGAGCGGAGGGAGGGGCGGGGGTAGGGCGCCGCCTAC
CCTTCCTCCCTCCCTTCCTCCGCCACCACCGGTCGTTCTTCTCCCGCTAC
CTCCCCTCCCTCCTCCTCCTCTGCACCCTGTCCTCCTTCCCTCCCTCGAA
CCGCTCCAACCCCCCTCATTCGCGCGCCGGCTGGTTCGCTTTTCCCTTCG
ACGGCCTTTTTGTCTTCCCAGGCGGACCCTCCAGCTCCCTCAACGCTGAT
TCCACCCTCGCACCCTTCCAATCCTTCGTCCTCCTCCGCCACGCTTGGCC
CGTACAGAAGCTTGAATTTGCGGCGGCGAGCCCGGATTTCTACCATCGGG
TGGCTGGCATGTATTTCACCATCGCCTTCTCCCTGAGCACCCTCTACCTA
AACGCCTATTGCATGTACCATCGGATTTCCCGCCGACGGACCGAGAACCG
CTTCTCTCTGTCGCAGATCATGGGGAGGGAAATCCTCCTCCTCCTCTTCC
TCGTCTCCTCGTGCGAGGCCTCCGCCCTCCTCCACCGCTTCCTCCTCCAC
TGCATCTTCTCGGTCCTGGCCTCTGTCCCCGCCGCCTGGTCCGCCGTCCT
CTGCCCCAGCCTGCTGACGACGGCGAAGGAGGTCGGTCTGGGCTTTTACA
GGCTGGGTATCGAACTCATGCTGTTCTCGAGCCTTTTGTTGGGCCCGGCC
TTGGGGCCGCAGGACCTCGGCATTTTGGGCACCGGGCATCTGGGGGGAAG
GGAGGGCGGGGAAGGGGGAGCGGCGTGGGAGAACCGGTTGCAGGCGATGG
CCTTGACGCGCTTCAGCCTCTGTGCGGTCCCGAGGGGCCTCTTGGAGCTT
CTGTGAGTGGAGGGAGGGACGGAGGGAAGGGGGGCGAGAAATAAAATTGA
GCGGCGTGACGGCCAGGGGTCCGGGGCCAGTGTTTGTGTGGAAGAGAAGA
AAAGGAAAGAAGGTTAAGGGTGTAACATTGTTCAGGC

protein sequence of rna4731

>rna4731-protein ID=rna4731-protein|Name=rna4731|organism=Nannochloropsis gaditana|type=polypeptide|length=246bp
MSGRDSQYDHHITIFSPQGRLYQIEYAFKAANSEGLTSVAVRGKECVAVV
TQKKVPDRLIDPSSVSNIYQITDKVGAVMTGMTTDSRAQVTRLRQEAHEF
RFKYGYDIPVHVLAKRIADIAQVYTQQASMRALATVCMLVGVDDERGPQL
YKVDPAGHFFPFKATAAGVKQDEATNWLEKKVGDLGGLGTEETVELAIMA
LQSVLSTDFKGSEIEVGVVEGVGGFFHTLTEGEIDHHLTAITEKDA

mRNA from alignment at CM002464.1:201306..202971+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4731 ID=rna4731|Name=rna4731|organism=Nannochloropsis gaditana|type=mRNA|length=1666bp|location=Sequence derived from alignment at CM002464.1:201306..202971+ (Nannochloropsis gaditana)
TGtacttctttcctccccttttggCGCAAACCATACGAAAGACACGCATA
TTAGCGGATGGGAACAAAATCGGATGCAACCAGCTTTTTATGCGCGTAGC
GCGCGTCTGATCTTCCTGAGCGCTGACTCCGGAGCGTGCGGCCACGCATA
AACGCCAGCTTAtatcgccctcctcttcacttCCTTCATCCTAGTACCCC
CTAGGTACTGCCTGCCCCTTTTCATCATGTCAGGAAGAGACTCCCAATAC
GACCACCACATAACCATCTTCTCGCCTCAAGGCCGCTTGTACCAAATCGA
ATACGCCTTCAAAGCCGCCAACAGTGAGGGACTAACTTCAGTCGCCGTtc
gagggaaggaatgcgTCGCTGTCGTCACTCAAAAGAAGGTGCCAGACCGT
CTCATTGGTGAGTCTTGTCATGTGCATGCTTGCCTTTGTTTTTTAAACAA
CAAATTATGCTTTCAAAGTCATATAAGCGCCCTATGGAGGCGGACACTAA
CGAGGAAAAAATAAATGAAAAAGGGCTTTCTCTGCTCACCTATGCTATCG
ACTCGCCACCCTCCGCACAGATCCCTCTTCCGTGTCCAACATCTATCAAA
TCACGGACAAAGTGGGCGCAGTGATGACAGGGATGACCACAGATAGCCGC
GCCCAGGTGACCCGTTTGCGGCAGGAGGCGCACGAATTTCGGTTTAAATA
CGGGTATGACATCCCTGTGCACGTTCTTGCCAAACGCATCGCCGACATCG
CACAGGTAGAGAGGGGGGACGACAGGCAGCGAAACACACGGAAAAGCGTG
GGAGATGAGAGCACGGcgggatttttttccttgttgACATTTCATGGCTC
ATAATCCTTCggcatcccttcctccccccctcccatctttccctcctccc
ttccaccttttccccctAGGTTTATACGCAGCAAGCGTCCATGCGCGCCT
TGGCGACAGTGTGTATGCTGGTGGGTGTGGACGACGAACGGGGCCCTCAG
CTCTACAAAGTAGACCCTGCCGGtcacttcttccccttcaaggtgcagag
ggcgggaaggaggggggaggcaaagggCTCGCCCTCAGATCGAGGGACCA
TAAAGACTTCTTCGATATCATCTCCCTTCAACCAacccgccttccttttc
ttttccccttcatcTTTATTGCACGTGGTCAGGCCACCGCTGCCGGCGTG
AAGCAGGACGAGGCGACCAATTGGCTCGAAAAAAAAGTCGGGGATTTGGG
GGGTctcgggacggaggagacggtggaaCTCGCGATCATGGCCCTCCAGT
CGGTGCTATCCACGGACTTCAAGGGCTCGGAAATCGAAGTGGGCGTGGTG
GAAGGTGTAGGTGGGTTTTTCCACACATTGACAGAAGGAGAAATCGACCA
TCATTTGACGGCAATTACAGAGAAAGATGCATGAGGTAGAATTGATGTAA
TCAGGGCAGCAGTGGAGAATGAGAGAGAtgcgcgggaggagaggagggga
aggacgtgggCCTGAGAAAAGGGTGCGTAAAGTGGGCGGCACCCAAAAGA
AGTCACTTCCTGCCAAACTACTGATATTATGTCTCCTTCCACCTGGTGGC
TTGATGGCTTCGCTTCGATACCGATGACGTCTTCTTATGAAGTcatttcc
tcgtccccgtgcATCA

Coding sequence (CDS) from alignment at CM002464.1:201306..202971+

>rna4731 ID=rna4731|Name=rna4731|organism=Nannochloropsis gaditana|type=CDS|length=2964bp|location=Sequence derived from alignment at CM002464.1:201306..202971+ (Nannochloropsis gaditana)
ATGTCAGGAAGAGACTCCCAATACGACCACCACATAACCATCTTCTCGCC
TCAAGGCCGCTTGTACCAAATCGAATACGCCTTCAAAGCCGCCAACAGTG
AGGGACTAACTTCAGTCGCCGTtcgagggaaggaatgcgTCGCTGTCGTC
ACTCAAAAGAAGGTGCCAGACCGTCTCATTGATCCCTCTTCCGTGTCCAA
CATCTATCAAATCACGGACAAAGTGGGCGCAGTGATGACAGGGATGACCA
CAGATAGCCGCGCCCAGGTGACCCGTTTGCGGCAGGAGGCGCACGAATTT
CGGTTTAAATACGGGTATGACATCCCTGTGCACGTTCTTGCCAAACGCAT
CGCCGACATCGCACAGGTTTATACGCAGCAAGCGTCCATGCGCGCCTTGG
CGACAGTGTGTATGCTGGTGGGTGTGGACGACGAACGGGGCCCTCAGCTC
TACAAAGTAGACCCTGCCGGtcacttcttccccttcaagGCCACCGCTGC
CGGCGTGAAGCAGGACGAGGCGACCAATTGGCTCGAAAAAAAAGTCGGGG
ATTTGGGGGGTctcgggacggaggagacggtggaaCTCGCGATCATGGCC
CTCCAGTCGGTGCTATCCACGGACTTCAAGGGCTCGGAAATCGAAGTGGG
CGTGGTGGAAGGTGTAGGTGGGTTTTTCCACACATTGACAGAAGGAGAAA
TCGACCATCATTTGACGGCAATTACAGAGAAAGATGCATGAATGTCAGGA
AGAGACTCCCAATACGACCACCACATAACCATCTTCTCGCCTCAAGGCCG
CTTGTACCAAATCGAATACGCCTTCAAAGCCGCCAACAGTGAGGGACTAA
CTTCAGTCGCCGTtcgagggaaggaatgcgTCGCTGTCGTCACTCAAAAG
AAGGTGCCAGACCGTCTCATTGATCCCTCTTCCGTGTCCAACATCTATCA
AATCACGGACAAAGTGGGCGCAGTGATGACAGGGATGACCACAGATAGCC
GCGCCCAGGTGACCCGTTTGCGGCAGGAGGCGCACGAATTTCGGTTTAAA
TACGGGTATGACATCCCTGTGCACGTTCTTGCCAAACGCATCGCCGACAT
CGCACAGGTTTATACGCAGCAAGCGTCCATGCGCGCCTTGGCGACAGTGT
GTATGCTGGTGGGTGTGGACGACGAACGGGGCCCTCAGCTCTACAAAGTA
GACCCTGCCGGtcacttcttccccttcaagGCCACCGCTGCCGGCGTGAA
GCAGGACGAGGCGACCAATTGGCTCGAAAAAAAAGTCGGGGATTTGGGGG
GTctcgggacggaggagacggtggaaCTCGCGATCATGGCCCTCCAGTCG
GTGCTATCCACGGACTTCAAGGGCTCGGAAATCGAAGTGGGCGTGGTGGA
AGGTGTAGGTGGGTTTTTCCACACATTGACAGAAGGAGAAATCGACCATC
ATTTGACGGCAATTACAGAGAAAGATGCATGAATGTCAGGAAGAGACTCC
CAATACGACCACCACATAACCATCTTCTCGCCTCAAGGCCGCTTGTACCA
AATCGAATACGCCTTCAAAGCCGCCAACAGTGAGGGACTAACTTCAGTCG
CCGTtcgagggaaggaatgcgTCGCTGTCGTCACTCAAAAGAAGGTGCCA
GACCGTCTCATTGATCCCTCTTCCGTGTCCAACATCTATCAAATCACGGA
CAAAGTGGGCGCAGTGATGACAGGGATGACCACAGATAGCCGCGCCCAGG
TGACCCGTTTGCGGCAGGAGGCGCACGAATTTCGGTTTAAATACGGGTAT
GACATCCCTGTGCACGTTCTTGCCAAACGCATCGCCGACATCGCACAGGT
TTATACGCAGCAAGCGTCCATGCGCGCCTTGGCGACAGTGTGTATGCTGG
TGGGTGTGGACGACGAACGGGGCCCTCAGCTCTACAAAGTAGACCCTGCC
GGtcacttcttccccttcaagGCCACCGCTGCCGGCGTGAAGCAGGACGA
GGCGACCAATTGGCTCGAAAAAAAAGTCGGGGATTTGGGGGGTctcggga
cggaggagacggtggaaCTCGCGATCATGGCCCTCCAGTCGGTGCTATCC
ACGGACTTCAAGGGCTCGGAAATCGAAGTGGGCGTGGTGGAAGGTGTAGG
TGGGTTTTTCCACACATTGACAGAAGGAGAAATCGACCATCATTTGACGG
CAATTACAGAGAAAGATGCATGAATGTCAGGAAGAGACTCCCAATACGAC
CACCACATAACCATCTTCTCGCCTCAAGGCCGCTTGTACCAAATCGAATA
CGCCTTCAAAGCCGCCAACAGTGAGGGACTAACTTCAGTCGCCGTtcgag
ggaaggaatgcgTCGCTGTCGTCACTCAAAAGAAGGTGCCAGACCGTCTC
ATTGATCCCTCTTCCGTGTCCAACATCTATCAAATCACGGACAAAGTGGG
CGCAGTGATGACAGGGATGACCACAGATAGCCGCGCCCAGGTGACCCGTT
TGCGGCAGGAGGCGCACGAATTTCGGTTTAAATACGGGTATGACATCCCT
GTGCACGTTCTTGCCAAACGCATCGCCGACATCGCACAGGTTTATACGCA
GCAAGCGTCCATGCGCGCCTTGGCGACAGTGTGTATGCTGGTGGGTGTGG
ACGACGAACGGGGCCCTCAGCTCTACAAAGTAGACCCTGCCGGtcacttc
ttccccttcaagGCCACCGCTGCCGGCGTGAAGCAGGACGAGGCGACCAA
TTGGCTCGAAAAAAAAGTCGGGGATTTGGGGGGTctcgggacggaggaga
cggtggaaCTCGCGATCATGGCCCTCCAGTCGGTGCTATCCACGGACTTC
AAGGGCTCGGAAATCGAAGTGGGCGTGGTGGAAGGTGTAGGTGGGTTTTT
CCACACATTGACAGAAGGAGAAATCGACCATCATTTGACGGCAATTACAG
AGAAAGATGCATGA

Synonyms

Publications