rna4729, rna4729 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4729
Unique Name	rna4729
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2367
Alignment location	CM002464.1:195796..196782 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100400g2.8597.mrna
Orig protein id	gnl\|cribi\|Naga_100400g2.8597
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:195796..196782 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100400g2	gene4566	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4729	rna4729-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25960.1	cds4717	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:195796..196782+
coding sequence from alignment at CM002464.1:195796..196782+

mRNA sequence

>rna4729 ID=rna4729|Name=rna4729|organism=Nannochloropsis gaditana|type=mRNA|length=2367bp
ATGGAGCCGTACAACCGTAACACAGGAGCTATTAGCAAGAAAGCTTCGCC
ACCTGAATCTTCTTCACAGTCTACATGCTTTGTGAAGAAGCTCTTTACCA
TGGTGGCAGTCGAGGATCCTTCCATTCTCTCATTCACTCCAGATGGCAAG
AGTTTTGAGGTTAAAAACCCGAAGCGCCTCGAGAGTGAAATCCTGCCTCG
ATACTATCGACACGGCCACTTCACCTCCTTTGTGCGCCAGCTGAACTTCT
ACAATTTCAAGAAAGTTTCCAAAGAAAGGAACATTTGGATCTACCGGCAC
GAATGCTTCCAGCGCGGCCGCCCCCAGCTCTTAGACATGCTCAAAAGGAA
AACGAGCAATGCCCACCACCCCCACCACCCTTACAACATCCAGCATACCA
TGGGGGGGGGGAGGGCGGGGGAAGGAAATGGCGGCGGAGAGGGAGGGCAG
GGGATGCCTGGGAACGAGCATGCGACGAAGATGGCGTTGGCGAAGATGAC
GTCCAAGGAAGCAGGGCGCCATGGCGGGAGGGCCCCTTCTGGGGGAAGGA
GGAGCAAGCCCTCCCCTGAATTCACGTACCAGCCCGGCTTTTTTTCCCCG
CTTTCCCCGGCCCCTCTTCCCCCTTCCCCGTACGCACACCCGCAGCACCA
CCCCCACATGCAATGCCAGCCTATGGACCTTCCCTTTCAGCCGCACGGCG
GCCCCCGGGAGGCGAGCCCTTCGGCCCACGGCGGCCCGACTCTCCCCCTC
AAGCATGGCCACGCGTCCTTACCCCGCAATGCGAGCGGAGACACCTTCTC
CTCCACCTCCACGTCGGACGAGTCTTCCTACGCTGCCTGCGGGCATCCCC
CTCCCCACCATCCACAGCACCCCACGCACTCCCAGCCACAGCCACAACAC
AGCCCAGACCTTCAAAGCTACGGCTGGGCGAAAGGAAGGCTTGGAATGGA
CGGGACCCCTCGGTGTACCCTCCCTCCCTCCCTCCCTCCCCCTCCCTCCA
CCCCGTACTCCACCCTGTCCCGGCCCTGCCCCTCCCCCCCCGAGCCCGGC
GCCCGGCAGCCTCCACAATGTGCCCTCCCCCCCTCCCAAGGCCCCCACAT
CACGTACCAAAGACTGGAGACTCATGTTCCTCCCTCAGGGCGACCCCGAC
CCCTGAGCTCCGCCGGAGGGGCCCAGGGCACTGAGGCCTATGCCCCCGTG
CCGGGCCCGCTCTCGGAGACAGGTAGCGGCGGGCACACCACCCGGGAGAA
CAGTTTGGACGACTCCGTCTGCAGTTTCCACCGGGGGGAGGGAGGTGCGC
GGGGCGGGCGGGGCCCTAGGTCGGAGCACGTCCACCCACCACACCCGTCG
CGACCGCTCTACTACGTCTCCGCCGAGGGGGAGGGAGGGAGCACCACCCC
TCCCTCCTTCCCGCCCTCGCAGGCACGCGGGCAGGGGAAGATGTCTTCGT
TGCCCCGTTTCTTGGACCAGGGGGTGGCTGGAAGAGAGGGGCGAGGCCCC
AGCAGTCCTCAGTTTACCATGGCCGTGGGACGGACACAGGGCCCTCCCTC
CCTCCTCGATGCGCGCGTGTCGAAGGGGGGGAAGCAGGGTGTCGCCCTCC
CTCCCTCCCTTCCTGCGTCGGTGGGGACGTACAACCATTGGGCGCCTGGG
ACGCGGGTAGTGGGCTCGTCCACACTCCCTTCCTCTTTCCCTTCCTCCCA
CCCCTCCTCGCACGGGGCAGATGGATCCAGGGCCCTCTCTTCCCACCCCG
GGGCTGGTCTTTGCAAAAGCCACCGGGGTGAGCGGGAAGCGGGGCATTTG
ATCCAACTTCCCCATGCCTTCCGGTCCACGCCGGCAAGCCAACGCTTGTA
CCCTCCCTCGCCCCAACACCGGGGCGGGAGGGGGAAAGAGGAGGAGGAGA
GCGGGGGGGAGGAAGAGGAAGGGAGCCAGAGCAGCTTGGTGTCGAGTCTG
TCGTCCGAGGATGAATTCGACTCCGGCGACCTCTGCCACGACCACAGGCA
GGGGTCTTGCTCCCAGCAGCAGCAGGCGTTCCTGGAGCACGTGGGGCGCC
GGCAGCGACACCACCACCACCACCACCACCACCACCACCACCACAGTCAT
CCCCGCCACGGCGGGGAGGGCGGTCGGCTTGGAAAACGCGCGGCACACTA
CGGACTCGGGCCTATCCCCAGGCCGCAGGAGGCGCGGCGCAAGCCACGGT
CCTCCCATTCCCAAACTGCCCGGCCGGCCGCACCCGAGAAGCCGCAAGAC
GTGAGTGTGGACGAGGAGGAAGCGGCGATGCAGATGGCGAGCTTTCGACT
GGGGCGGTTTTGGGGCGGGGCGATGGGGGGGAGAGGGGAAGGGTTAAAAA
AGACGTTGGAAGTGTGA

protein sequence of rna4729

>rna4729-protein ID=rna4729-protein|Name=rna4729|organism=Nannochloropsis gaditana|type=polypeptide|length=251bp
MKEGRKADGWESGGWEGMHYLLVKLQYPYNWGLIDLITHVWYLQTLFSNL
CMHVCTCVFRGGKICEKRVFRGPHWPSRDRVKEKPPPRRGVTPVRCTDKA
GGMEFACLLSLMDRSRSHLTWQRTKKAKTAAIDSDCRRTYNTERGRPLTK
PDSVRGRWWAKESCSGGEMEAISVWVAPPYAFLIIPQVPACDESPQRIYP
PLIKGKEKEKKNERSAKMREAEKVKRQRMWYFLVLPLSLSRTTRPLLGSG
I

mRNA from alignment at CM002464.1:195796..196782+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4729 ID=rna4729|Name=rna4729|organism=Nannochloropsis gaditana|type=mRNA|length=987bp|location=Sequence derived from alignment at CM002464.1:195796..196782+ (Nannochloropsis gaditana)
atgaaggagggaaggaaggcggacgggtgggagagcgggggcTGGGAAGG
GATGCATTATTTGTTGGTGAAGCTCCAGTATCCCTATAATTGGGGCTTGA
TCGATTTGATCACGCATGTGTGGTACCTACAAACTTTATTTTCCAATTTA
TGTATGCATGTGTGTACGTGCGTATTCCGAGGAGGGAAGATATGCGAGAA
GAGAGTGTTCAGGGGGCCGCATTGGCCCTCCGTTCGTTCGCGAGCCGGAG
GATGATGTGGGACAGTGcccatggagaaggaagaagaaggcgacaAGGTA
GAGAGATCGAGTGAAAGAGAAACCTCCCCCTAGGAGGGGCGTGACACCCG
TGCGGTGTACCGACAAGGCCGGAGGAATGGAGTTTGCATGCCTGCTTTCC
CTGATGGATCGCTCAAGATCGCATCTTACATGGCAACGGAGTGTGATTTA
CGGCGATGCTTAAAAATTATGACCAGAATGTGGGCCCACGGGAAAGAGCG
AAGAAGGCGAAAACGGCGGCAATAGACAGCGACTGTAGACGGACATATAA
CACAGAGAGGGGGCGACCACTGACAAAACCAGACTCCGTAAGAGGAAGAT
GGTGGGCGAAGGAGTCCTGCGTTCGAATCGTTTGGGCACGGCCTTTTCAA
AACAAATAAAAGAGCGGCGGTGAAATGGAAGCAATTTCGGTTTGGGTCGC
CCCTCCTTATGCCTTCCTCATAATCGTAACTTAAAAAGACGATGAGAGCC
GCGGACGTCATCATTTAATTCAGCATGTAAGAAAAGCCACAGGTACCAGC
GTGCGACGAGTCCCCACAAAGAATATATCCCCCTCTTataaaagggaagg
aaaaagagaaaaaaaatgagCGAAGCGCCAAGATGCGAGAGGCCGAGAAG
GTAAAACGGCAGAGGATGTGGTACTTCCTTGttttgcccctctccctttc
gcGGACTACGCGGCCCTTACTTGGGAGCGGAATATAA

Coding sequence (CDS) from alignment at CM002464.1:195796..196782+

>rna4729 ID=rna4729|Name=rna4729|organism=Nannochloropsis gaditana|type=CDS|length=3780bp|location=Sequence derived from alignment at CM002464.1:195796..196782+ (Nannochloropsis gaditana)
atgaaggagggaaggaaggcggacgggtgggagagcgggggcTGGGAAGG
GATGCATTATTTGTTGGTGAAGCTCCAGTATCCCTATAATTGGGGCTTGA
TCGATTTGATCACGCATGTGTGGTACCTACAAACTTTATTTTCCAATTTA
TGTATGCATGTGTGTACGTGCGTATTCCGAGGAGGGAAGATATGCGAGAA
GAGAGTGTTCAGGGGGCCGCATTGGCCCTCCAGAGATCGAGTGAAAGAGA
AACCTCCCCCTAGGAGGGGCGTGACACCCGTGCGGTGTACCGACAAGGCC
GGAGGAATGGAGTTTGCATGCCTGCTTTCCCTGATGGATCGCTCAAGATC
GCATCTTACATGGCAACGGACGAAGAAGGCGAAAACGGCGGCAATAGACA
GCGACTGTAGACGGACATATAACACAGAGAGGGGGCGACCACTGACAAAA
CCAGACTCCGTAAGAGGAAGATGGTGGGCGAAGGAGTCCTGCAGCGGCGG
TGAAATGGAAGCAATTTCGGTTTGGGTCGCCCCTCCTTATGCCTTCCTCA
TAATCCCACAGGTACCAGCGTGCGACGAGTCCCCACAAAGAATATATCCC
CCTCTTataaaagggaaggaaaaagagaaaaaaaatgagCGAAGCGCCAA
GATGCGAGAGGCCGAGAAGGTAAAACGGCAGAGGATGTGGTACTTCCTTG
ttttgcccctctccctttcgcGGACTACGCGGCCCTTACTTGGGAGCGGA
ATATAAatgaaggagggaaggaaggcggacgggtgggagagcgggggcTG
GGAAGGGATGCATTATTTGTTGGTGAAGCTCCAGTATCCCTATAATTGGG
GCTTGATCGATTTGATCACGCATGTGTGGTACCTACAAACTTTATTTTCC
AATTTATGTATGCATGTGTGTACGTGCGTATTCCGAGGAGGGAAGATATG
CGAGAAGAGAGTGTTCAGGGGGCCGCATTGGCCCTCCAGAGATCGAGTGA
AAGAGAAACCTCCCCCTAGGAGGGGCGTGACACCCGTGCGGTGTACCGAC
AAGGCCGGAGGAATGGAGTTTGCATGCCTGCTTTCCCTGATGGATCGCTC
AAGATCGCATCTTACATGGCAACGGACGAAGAAGGCGAAAACGGCGGCAA
TAGACAGCGACTGTAGACGGACATATAACACAGAGAGGGGGCGACCACTG
ACAAAACCAGACTCCGTAAGAGGAAGATGGTGGGCGAAGGAGTCCTGCAG
CGGCGGTGAAATGGAAGCAATTTCGGTTTGGGTCGCCCCTCCTTATGCCT
TCCTCATAATCCCACAGGTACCAGCGTGCGACGAGTCCCCACAAAGAATA
TATCCCCCTCTTataaaagggaaggaaaaagagaaaaaaaatgagCGAAG
CGCCAAGATGCGAGAGGCCGAGAAGGTAAAACGGCAGAGGATGTGGTACT
TCCTTGttttgcccctctccctttcgcGGACTACGCGGCCCTTACTTGGG
AGCGGAATATAAatgaaggagggaaggaaggcggacgggtgggagagcgg
gggcTGGGAAGGGATGCATTATTTGTTGGTGAAGCTCCAGTATCCCTATA
ATTGGGGCTTGATCGATTTGATCACGCATGTGTGGTACCTACAAACTTTA
TTTTCCAATTTATGTATGCATGTGTGTACGTGCGTATTCCGAGGAGGGAA
GATATGCGAGAAGAGAGTGTTCAGGGGGCCGCATTGGCCCTCCAGAGATC
GAGTGAAAGAGAAACCTCCCCCTAGGAGGGGCGTGACACCCGTGCGGTGT
ACCGACAAGGCCGGAGGAATGGAGTTTGCATGCCTGCTTTCCCTGATGGA
TCGCTCAAGATCGCATCTTACATGGCAACGGACGAAGAAGGCGAAAACGG
CGGCAATAGACAGCGACTGTAGACGGACATATAACACAGAGAGGGGGCGA
CCACTGACAAAACCAGACTCCGTAAGAGGAAGATGGTGGGCGAAGGAGTC
CTGCAGCGGCGGTGAAATGGAAGCAATTTCGGTTTGGGTCGCCCCTCCTT
ATGCCTTCCTCATAATCCCACAGGTACCAGCGTGCGACGAGTCCCCACAA
AGAATATATCCCCCTCTTataaaagggaaggaaaaagagaaaaaaaatga
gCGAAGCGCCAAGATGCGAGAGGCCGAGAAGGTAAAACGGCAGAGGATGT
GGTACTTCCTTGttttgcccctctccctttcgcGGACTACGCGGCCCTTA
CTTGGGAGCGGAATATAAatgaaggagggaaggaaggcggacgggtggga
gagcgggggcTGGGAAGGGATGCATTATTTGTTGGTGAAGCTCCAGTATC
CCTATAATTGGGGCTTGATCGATTTGATCACGCATGTGTGGTACCTACAA
ACTTTATTTTCCAATTTATGTATGCATGTGTGTACGTGCGTATTCCGAGG
AGGGAAGATATGCGAGAAGAGAGTGTTCAGGGGGCCGCATTGGCCCTCCA
GAGATCGAGTGAAAGAGAAACCTCCCCCTAGGAGGGGCGTGACACCCGTG
CGGTGTACCGACAAGGCCGGAGGAATGGAGTTTGCATGCCTGCTTTCCCT
GATGGATCGCTCAAGATCGCATCTTACATGGCAACGGACGAAGAAGGCGA
AAACGGCGGCAATAGACAGCGACTGTAGACGGACATATAACACAGAGAGG
GGGCGACCACTGACAAAACCAGACTCCGTAAGAGGAAGATGGTGGGCGAA
GGAGTCCTGCAGCGGCGGTGAAATGGAAGCAATTTCGGTTTGGGTCGCCC
CTCCTTATGCCTTCCTCATAATCCCACAGGTACCAGCGTGCGACGAGTCC
CCACAAAGAATATATCCCCCTCTTataaaagggaaggaaaaagagaaaaa
aaatgagCGAAGCGCCAAGATGCGAGAGGCCGAGAAGGTAAAACGGCAGA
GGATGTGGTACTTCCTTGttttgcccctctccctttcgcGGACTACGCGG
CCCTTACTTGGGAGCGGAATATAAatgaaggagggaaggaaggcggacgg
gtgggagagcgggggcTGGGAAGGGATGCATTATTTGTTGGTGAAGCTCC
AGTATCCCTATAATTGGGGCTTGATCGATTTGATCACGCATGTGTGGTAC
CTACAAACTTTATTTTCCAATTTATGTATGCATGTGTGTACGTGCGTATT
CCGAGGAGGGAAGATATGCGAGAAGAGAGTGTTCAGGGGGCCGCATTGGC
CCTCCAGAGATCGAGTGAAAGAGAAACCTCCCCCTAGGAGGGGCGTGACA
CCCGTGCGGTGTACCGACAAGGCCGGAGGAATGGAGTTTGCATGCCTGCT
TTCCCTGATGGATCGCTCAAGATCGCATCTTACATGGCAACGGACGAAGA
AGGCGAAAACGGCGGCAATAGACAGCGACTGTAGACGGACATATAACACA
GAGAGGGGGCGACCACTGACAAAACCAGACTCCGTAAGAGGAAGATGGTG
GGCGAAGGAGTCCTGCAGCGGCGGTGAAATGGAAGCAATTTCGGTTTGGG
TCGCCCCTCCTTATGCCTTCCTCATAATCCCACAGGTACCAGCGTGCGAC
GAGTCCCCACAAAGAATATATCCCCCTCTTataaaagggaaggaaaaaga
gaaaaaaaatgagCGAAGCGCCAAGATGCGAGAGGCCGAGAAGGTAAAAC
GGCAGAGGATGTGGTACTTCCTTGttttgcccctctccctttcgcGGACT
ACGCGGCCCTTACTTGGGAGCGGAATATAA

Synonyms

Publications