rna4726, rna4726 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4726
Unique Name	rna4726
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3257
Alignment location	CM002464.1:190926..191354 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100400g5.8594.mrna
Orig protein id	gnl\|cribi\|Naga_100400g5.8594
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:190926..191354 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100400g5	gene4563	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4726	rna4726-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25957.1	cds4714	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:190926..191354-
coding sequence from alignment at CM002464.1:190926..191354-

mRNA sequence

>rna4726 ID=rna4726|Name=rna4726|organism=Nannochloropsis gaditana|type=mRNA|length=3257bp
GAGGAACGATTCGATGCCAGCGGGCAAGCCCATAGCCTAAGGTCAAAAGC
TGGATAACGCGAATGGACCCAACAAAAACACCAGAATATCATAAAATGAT
TGCCAGTGGCGTACGGCAATCTTGGCAATGGAAAATACAGGTTTCACATG
GTTTTCGGACGTCTATGGGCTTCCGCTGATGGTTTCCATTTCACTCACTT
CAGCCCACAGGAGGCGCCTGAAGCATCCTGTGCTGCCCTTTTCCCGACGA
CTTTCTCTCCACTCTAGTTGGTAGAGTGTCGGGCTCTAGCGCCTTCAATA
TTGTCTTTTTGTTGGATGTCTTATTCTGCTACCATCCAAGGAACAGGAGT
AGAACCGCGAACGTGCTCTGCCGATGGTGAGTCGGCCACCCTGTTGAAGG
ACGCGATGACCCCCGAAAGCCAGAGCCCATCGTCGACCGCGGAAGTCCAA
GACACCGCATGCAAAGATGCTTCGAATGCCACGGCGGGCACGATGGGTGA
TTTTGCGACTGTGTTCAAGAAATGTTTTGCGAAAACCTGCTTCGTGCACC
CCTTGATGGTCCTGGTCCAGGTCATCTTCTCGGGCTATCACGTTCTCACG
TCGAGCGCATTGAAGACAAAAGGCGTGAATCCGCTGGTATTCGCCTTGTA
CCGCGAGCTGAGTGCGTCCCTTTTCATGGCCTTGTACGCTTGCGTGGCGG
TGTGGAGGGGAAAACACAGATGGCAGCTGGAAACAAGACACATCCCTCGT
TTCCTGGCATTGGGCCTTTTTTCCGCCGGGAACGTGCTTGGGGCCGTGCA
AGCCTTGACCCTAATAACCCCCACCAACTTTTCCGTCCTCCAACCCTCCA
TCCCCGTCTTCACCATGCTCCTCTCCGTGCTCTTCCGGATGGAACGCCTC
ACCCCCTTGAAGGCATTGGGTCTCTTAGCGGCGGTAGCGGGCGCAGTGGT
GGTGGAAGTTGTCCACCCGGCGGGTATTTCCGGCCAAGAAGGAGGAGAGA
GCGAGGGAGGGGATGGCAGCAGCAGCCGCGCAGATTTCATCTCGGGCAAT
GTCATTGTCCTTCTCCAATGCCTCTCCATGGCCTCCCTCCTCGTCTTTCA
AAAAACGGCGCTCACGCACTACCACCCCACCGTCGTGACCGCCTGGTACT
ACTCGATCGGATCCGTCCTGACCCTCATCATTTGCGTGAGTCAGTCCCTC
CCTTCCTCCGCCTATGCCCTGTCTACCTCCCCGGCGCCTTGGCTGGCACT
TGCCTACGCCGCCTTGCTGGGCACGGCCTTCAACTACAACGCGTACAGCT
GGGCAGGTACCGTTGTGGCTCCCGGCATCATCTCCATCTACTCCACCCTT
CAACCTGTGGGGACAGCGCTATTGTCCGTCCTCTTCCTGCACGCAACCAT
CACGGGCGGGGAGATGGGGGGGGGGGGTATTGGTCATTCTGGGCTTGGTA
GGAACGGTGTGGGGACGAGCGATGGAGAAGAGGGAGTTGGAGAAGCGAGA
GAAGCGGGAGAGGGAGGAGGGGGGGGGTTCGGAGGGCCTGGAGAAAGGGG
AGGGAATGGCCGTGATGGGATTGGAAGGGGGGAAGGCGCCAGTTTCTTAC
GGACTTACGGGCGAGAGGGACAGTAAATCCGTGCCGTTGGTCGGGGTCGA
GGAGGATGAAGGGGTCCGGGAAAGCGACGAGGTGAGGGTCCTTTGATGGT
GGTCCCGGGGCCTAGCCCATTTCATGCGCCGCAAGGGGGTGATGAGGAGG
GAGGGTCGTGGACCCTACTCACTAAAGCGCGTCGTAAAGCGTCAGGACTG
CGAGTTGATGGTGTAAACAGCTTGTACGATAGATAAGATCGGACGAATGT
AGGGATTGTGGCGGGGATGGGCCTGTTGGCGTGTCGTACGTCATAGAACG
GATCCAACTGTTCATCTCTCTGATGACATTCCTGCACGAGACCTGGGGTG
AAATTACGCAAGATACTGGACGGTGTGACACAAATGTAATTATTTGTATA
AGTGGCGGATAAAGCATGAAACTGGGTAGTCTTAGCCTTCGTCCTCCCGG
AGCAATAATACCGGGGCCTGCGAGCTTAGCAGAAAATTAGCAATAACATG
GAACGGCATGCCACTTACTTGTTTCTTGGATCCAATACCTTCCCCTGGTA
CTCATAATAGTACTATGAAAGGTTTACACAGTGGCTTGAGATGTATCAAA
GCCTAACCCAGCTTGTTTTCGGATGCTGCTTTGGGACTGAGTAGAAAGAG
GACGACATGGGGGACAGGACCTCGGCAGTTTTCCTTTCCAGATCCACATC
TCATCGGTGCAAGCAAAAAGAAGTTGACAGAAAACACAGGCTTTCGACGG
AATATACTACCTCTTTTCGCTATTGCGACATGAAAGGACCGAACACGTAG
ACGCCAATAACAAAATTCAGCAACCTCCCCCACCGGGTATCTTCGTCGGC
CCATAAGACTTCAAGAGCCGTCCGCTTCCCTCCAATCTTCTCCCCCAGGT
TTCCATTCCTTATTGATTTTCGTGGCATCTAAGAAACACTCTTTCACGTA
CACATACATTTCAGATTAAAATAGGACTCGCTCTACTAATGGGTTCCGCT
CAATCGAACGCCCGCGCTGCGGAAAAAAGGGCTTACGGTGCAGAATTCGT
GAGTGCTCTTACCGTCCCTCCCTTGTCCTTCCATTTTCTTCTGGAGCTTT
TTTAAGGGCAAGCCACTTGATTCGCCCATTCAAGATTCAAAATTCATCTA
TAATATTGGACAACAGAGAGAGCGCAGGGCAGCCCGCCAAGAAAACAAAC
TCAAGCTCGAAACCAAGTACGTGTCAGCGTGCCCCTTGCTGCATCCTCGT
ATCACAAGTTACCCCTCTTACTCTGCTGACCGATCAAAGTATTCCGCATC
TTTTACGATAGATGGAAAGCAAGTATGGCAGGCAATCCAATTACGGCCAT
CTCTCCACTAAAGCCCAAGATGGAAGCAAAACCTGAACCTGTTCCTCCTG
CTCCGCTGCAAACCAATAGACAGCGAGTGAAAGAGCTTTTGTCTAGAAAC
CAGAAATAGATTGATATCAATAATTGCGTATCATTGTTATAAAAAGCGAA
ATACTGCTAGGAAAAGAAAAAATGCCTTGGGCGAAACCGCGTCCGGCCCA
GGATCCTCTTAAGGTCCATATGGGCTAACAGCAGTCTCTCTCTATGGCTG
ACTCGCGAATTTGAATCCATCTTTTGAGCCTTTGGTGCAACGTGACAGAC
ATGTAAC

protein sequence of rna4726

>rna4726-protein ID=rna4726-protein|Name=rna4726|organism=Nannochloropsis gaditana|type=polypeptide|length=88bp
MDSESELEEYSGQTGEIWIQICLWMKEIEPRATQHLDYLNLARDSGIEES
SSDAHTSLTFFPEIAHNQIVFFPLFYRDEGEMNATVQK

mRNA from alignment at CM002464.1:190926..191354-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4726 ID=rna4726|Name=rna4726|organism=Nannochloropsis gaditana|type=mRNA|length=429bp|location=Sequence derived from alignment at CM002464.1:190926..191354- (Nannochloropsis gaditana)
ATGGATTCAGAATCAGAATTAGAAGAATACTCTGGTCAAACAGGAGAAAT
ATGGATTCAGATTTGCCTGTGGATGAAAGAAATTGAACCACGCGCAACAC
AACATCTTGATTACCTCAACTTAGCTAGAGACAGTGGAATTGAGGAGTCG
TCCTCGGATGCCCACACCTCGTTGACTTTTTTTCCGTGATGATGTACACT
ACCTGCTCATAGTCGGTCGCAAAATTCATACGAGTGATTGATTGAAAGTG
CAAGATAAGCTGATAAGCTACCTTGAATCATGATACCTATTTTTCCTTTC
ACCACGTTGGTGATTTTTACTTGTAAAGCCTACTTATTGGCCCTTAGAGA
AATAGCACATAATCAAATCGTATTCTTCCCTTTGTTTTATCGTGACGAGG
GAGAAATGAATGCCACGGTTCAAAAGTGA

Coding sequence (CDS) from alignment at CM002464.1:190926..191354-

>rna4726 ID=rna4726|Name=rna4726|organism=Nannochloropsis gaditana|type=CDS|length=534bp|location=Sequence derived from alignment at CM002464.1:190926..191354- (Nannochloropsis gaditana)
AGAAATAGCACATAATCAAATCGTATTCTTCCCTTTGTTTTATCGTGACG
AGGGAGAAATGAATGCCACGGTTCAAAAGTGAATGGATTCAGAATCAGAA
TTAGAAGAATACTCTGGTCAAACAGGAGAAATATGGATTCAGATTTGCCT
GTGGATGAAAGAAATTGAACCACGCGCAACACAACATCTTGATTACCTCA
ACTTAGCTAGAGACAGTGGAATTGAGGAGTCGTCCTCGGATGCCCACACC
TCGTTGACTTTTTTTCCAGAAATAGCACATAATCAAATCGTATTCTTCCC
TTTGTTTTATCGTGACGAGGGAGAAATGAATGCCACGGTTCAAAAGTGAA
TGGATTCAGAATCAGAATTAGAAGAATACTCTGGTCAAACAGGAGAAATA
TGGATTCAGATTTGCCTGTGGATGAAAGAAATTGAACCACGCGCAACACA
ACATCTTGATTACCTCAACTTAGCTAGAGACAGTGGAATTGAGGAGTCGT
CCTCGGATGCCCACACCTCGTTGACTTTTTTTCC

Synonyms

Publications