rna4725, rna4725 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4725
Unique Name	rna4725
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	252
Alignment location	CM002464.1:186889..190403 -

Link to JBrowse

Properties


Property Name	Value
Product	nodulin 21 -like transporter family protein
Orig transcript id	gnl\|cribi\|Naga_100400g6.8598.mrna
Orig protein id	gnl\|cribi\|Naga_100400g6.8598
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:186889..190403 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100400g6	gene4562	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4725	rna4725-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25961.1	cds4713	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:186889..190403-
coding sequence from alignment at CM002464.1:186889..190403-

mRNA sequence

>rna4725 ID=rna4725|Name=rna4725|organism=Nannochloropsis gaditana|type=mRNA|length=252bp
ATGGAAGTGGAATGGAAAGGGGAAAAAGGTTCTGTTAACGAAGTAGGCTA
CAACAAGGCCGATCCCGAGCATGTCCTTGTGAAGATTGATCCCCAGTACT
TCCGCCCCACCGAAGTCGAGCTCCTCCTCGGGAACCCGGCTAAAGCCAAG
AAGCACATAGGGTGGGAGCCAGAAGTCTCGTTCGACGACCTGGTCAAGGA
GATGGTTGAGGCGGATATTGCCCTGGTAGAGAAGGGAGACCTCACCTCCT
AG

protein sequence of rna4725

>rna4725-protein ID=rna4725-protein|Name=rna4725|organism=Nannochloropsis gaditana|type=polypeptide|length=436bp
MSYSATIQGTGVEPRTCSADGESATLLKDAMTPESQSPSSTAEVQDTACK
DASNATAGTMGDFATVFKKCFAKTCFVHPLMVLVQVIFSGYHVLTSSALK
TKGVNPLVFALYRELSASLFMALYACVAVWRGKHRWQLETRHIPRFLALG
LFSAGNVLGAVQALTLITPTNFSVLQPSIPVFTMLLSVLFRMERLTPLKA
LGLLAAVAGAVVVEVVHPAGISGQEGGESEGGDGSSSRADFISGNVIVLL
QCLSMASLLVFQKTALTHYHPTVVTAWYYSIGSVLTLIICVSQSLPSSAY
ALSTSPAPWLALAYAALLGTAFNYNAYSWAGTVVAPGIISIYSTLQPVGT
ALLSVLFLHATITGGEMGGGGIGHSGLGRNGVGTSDGEEGVGEAREAGEG
GGGGFGGPGERGGNGRDGIGRGEGASFLRTYGREGQ

mRNA from alignment at CM002464.1:186889..190403-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4725 ID=rna4725|Name=rna4725|organism=Nannochloropsis gaditana|type=mRNA|length=3515bp|location=Sequence derived from alignment at CM002464.1:186889..190403- (Nannochloropsis gaditana)
GAGGAACGATTCGATGCCAGCGGGCAAGCCCATAGCCTAAGGTCAAAAGC
TGGATAACGCGAATGGACCCAACAAAAACACCAGAATATCATAAAATGAT
TGCCAGTGGCGTACGGCAATCTTGGCAATGGAAAATACAGGTTTCACATG
GTTTTCGGACGTCTATGGGCTTCCGCTGATGGTTTCCATTTCACTCACTT
CAGCCCACAGGAGGCGCCTGAAGCATCCTGTGCTGCCCTTTTCCCGACGA
CTTTCTCTCCACTCTAGTTGGTAGAGTGTCGGGCTCTAGCGCCTTCAATA
TTGTCTTTTTGTTGGATGTCTTATTCTGCTACCATCCAAGGAACAGGAGT
AGAACCGCGAACGTGCTCTGCCGATGGTGAGTCGGCCACCCTGTTGAAGG
ACGCGATGACCCCCGAAAGCCAGAGCCCATCGTCGACCGCGGAAGTCCAA
GACACCGCATGCAAAGATGCTTCGAATGCCACGGCGGGCACGATGGGTGA
TTTTGCGACTGTGTTCAAGAAATGTTTTGCGAAAACCTGCTTCGTGCACC
CCTTGATGGTCCTGGTCCAGGTCATCTTCTCGGGCTATCACGTTCTCACG
TCGAGCGCATTGAAGACAAAAGGCGTGAATCCGCTGGTATTCGCCTTGTA
CCGCGAGCTGAGTGCGTCCCTTTTCATGGCCTTGTACGCTTGCGTGGCGG
TGTGGAGGGGAAAACACAGGTACGTGGAGTCAACCCTGGGCCCCCTCCCG
GCCGGTGCCATCGTTGTTCAATTTTTTAAGAAAAAGGCAATAGCGTAGTC
GGTCAGCCCTAAACCTTTAGTCGGGCGGGTCACGTTCTTAATACACCATG
ATCAGCCATGTGCGGTCTTTCACGGTGCTTGCAACCTTTCCCCCCGACCC
CGCATCGCCCACGCCTGTGCTCCCATCTCGGTCCCCAGGCCTGTCCTCTG
ATCCTCCGCTTCCATTTCCCTCTGTAGATGGCAGCTGGAAACAAGACACA
TCCCTCGTTTCCTGGCATTGGGCCTTTTTTCCGCCGGGAACGTGCTTGGG
GCCGTGCAAGCCTTGACCCTAATAACCCCCACCAACTTTTCCGTCCTCCA
ACCCTCCATCCCCGTCTTCACCATGCTCCTCTCCGTGCTCTTCCGGATGG
AACGCCTCACCCCCTTGAAGGCATTGGGTCTCTTAGCGGCGGTAGCGGGC
GCAGTGGTGGTGGAAGTTGTCCACCCGGCGGGTATTTCCGGCCAAGAAGG
AGGAGAGAGCGAGGGAGGGGATGGCAGCAGCAGCCGCGCAGATTTCATCT
CGGGCAATGTCATTGTCCTTCTCCAATGCCTCTCCATGGCCTCCCTCCTC
GTCTTTCAAAAAACGGCGCTCACGCACTACCACCCCACCGTCGTGACCGC
CTGGTACTACTCGATCGGATCCGTCCTGACCCTCATCATTTGCGTGAGTC
AGTCCCTCCCTTCCTCCGCCTATGCCCTGTCTACCTCCCCGGCGCCTTGG
CTGGCACTTGCCTACGCCGCCTTGCTGGGCACGGCCTTCAACTACAACGC
GTACAGCTGGGCAGGTACCGTTGTGGCTCCCGGCATCATCTCCATCTACT
CCACCCTTCAACCTGTGGGGACAGCGCTATTGTCCGTCCTCTTCCTGCAC
GCAACCATCACGGGCGGGGAGATGGGGGGGGGGGGTATTGGTCATTCTGG
GCTTGGTAGGAACGGTGTGGGGACGAGCGATGGAGAAGAGGGAGTTGGAG
AAGCGAGAGAAGCGGGAGAGGGAGGAGGGGGGGGGTTCGGAGGGCCTGGA
GAAAGGGGAGGGAATGGCCGTGATGGGATTGGAAGGGGGGAAGGCGCCAG
TTTCTTACGGACTTACGGGCGAGAGGGACAGTAAATCCGTGCCGTTGGTC
GGGGTCGAGGAGGATGAAGGGGTCCGGGAAAGCGACGAGGTGAGGGTCCT
TTGATGGTGGTCCCGGGGCCTAGCCCATTTCATGCGCCGCAAGGGGGTGA
TGAGGAGGGAGGGTCGTGGACCCTACTCACTAAAGCGCGTCGTAAAGCGT
CAGGACTGCGAGTTGATGGTGTAAACAGCTTGTACGATAGATAAGATCGG
ACGAATGTAGGGATTGTGGCGGGGATGGGCCTGTTGGCGTGTCGTACGTC
ATAGAACGGATCCAACTGTTCATCTCTCTGATGACATTCCTGCACGAGAC
CTGGGGTGAAATTACGCAAGATACTGGACGGTGTGACACAAATGTAATTA
TTTGTATAAGTGGCGGATAAAGCATGAAACTGGGTAGTCTTAGCCTTCGT
CCTCCCGGAGCAATAATACCGGGGCCTGCGAGCTTAGCAGAAAATTAGCA
ATAACATGGAACGGCATGCCACTTACTTGTTTCTTGGATCCAATACCTTC
CCCTGGTACTCATAATAGTACTATGAAAGGTTTACACAGTGGCTTGAGAT
GTATCAAAGCCTAACCCAGCTTGTTTTCGGATGCTGCTTTGGGACTGAGT
AGAAAGAGGACGACATGGGGGACAGGACCTCGGCAGTTTTCCTTTCCAGA
TCCACATCTCATCGGTGCAAGCAAAAAGAAGTTGACAGAAAACACAGGCT
TTCGACGGAATATACTACCTCTTTTCGCTATTGCGACATGAAAGGACCGA
ACACGTAGACGCCAATAACAAAATTCAGCAACCTCCCCCACCGGGTATCT
TCGTCGGCCCATAAGACTTCAAGAGCCGTCCGCTTCCCTCCAATCTTCTC
CCCCAGGTTTCCATTCCTTATTGATTTTCGTGGCATCTAAGAAACACTCT
TTCACGTACACATACATTTCAGATTAAAATAGGACTCGCTCTACTAATGG
GTTCCGCTCAATCGAACGCCCGCGCTGCGGAAAAAAGGGCTTACGGTGCA
GAATTCGTGAGTGCTCTTACCGTCCCTCCCTTGTCCTTCCATTTTCTTCT
GGAGCTTTTTTAAGGGCAAGCCACTTGATTCGCCCATTCAAGATTCAAAA
TTCATCTATAATATTGGACAACAGAGAGAGCGCAGGGCAGCCCGCCAAGA
AAACAAACTCAAGCTCGAAACCAAGTACGTGTCAGCGTGCCCCTTGCTGC
ATCCTCGTATCACAAGTTACCCCTCTTACTCTGCTGACCGATCAAAGTAT
TCCGCATCTTTTACGATAGATGGAAAGCAAGTATGGCAGGCAATCCAATT
ACGGCCATCTCTCCACTAAAGCCCAAGATGGAAGCAAAACCTGAACCTGT
TCCTCCTGCTCCGCTGCAAACCAATAGACAGCGAGTGAAAGAGCTTTTGT
CTAGAAACCAGAAATAGATTGATATCAATAATTGCGTATCATTGTTATAA
AAAGCGAAATACTGCTAGGAAAAGAAAAAATGCCTTGGGCGAAACCGCGT
CCGGCCCAGGATCCTCTTAAGGTCCATATGGGCTAACAGCAGTCTCTCTC
TATGGCTGACTCGCGAATTTGAATCCATCTTTTGAGCCTTTGGTGCAACG
TGACAGACATGTAAC

Coding sequence (CDS) from alignment at CM002464.1:186889..190403-

>rna4725 ID=rna4725|Name=rna4725|organism=Nannochloropsis gaditana|type=CDS|length=2622bp|location=Sequence derived from alignment at CM002464.1:186889..190403- (Nannochloropsis gaditana)
ATGGCAGCTGGAAACAAGACACATCCCTCGTTTCCTGGCATTGGGCCTTT
TTTCCGCCGGGAACGTGCTTGGGGCCGTGCAAGCCTTGACCCTAATAACC
CCCACCAACTTTTCCGTCCTCCAACCCTCCATCCCCGTCTTCACCATGCT
CCTCTCCGTGCTCTTCCGGATGGAACGCCTCACCCCCTTGAAGGCATTGG
GTCTCTTAGCGGCGGTAGCGGGCGCAGTGGTGGTGGAAGTTGTCCACCCG
GCGGGTATTTCCGGCCAAGAAGGAGGAGAGAGCGAGGGAGGGGATGGCAG
CAGCAGCCGCGCAGATTTCATCTCGGGCAATGTCATTGTCCTTCTCCAAT
GCCTCTCCATGGCCTCCCTCCTCGTCTTTCAAAAAACGGCGCTCACGCAC
TACCACCCCACCGTCGTGACCGCCTGGTACTACTCGATCGGATCCGTCCT
GACCCTCATCATTTGCGTGAGTCAGTCCCTCCCTTCCTCCGCCTATGCCC
TGTCTACCTCCCCGGCGCCTTGGCTGGCACTTGCCTACGCCGCCTTGCTG
GGCACGGCCTTCAACTACAACGCGTACAGCTGGGCAGGTACCGTTGTGGC
TCCCGGCATCATCTCCATCTACTCCACCCTTCAACCTGTGGGGACAGCGC
TATTGTCCGTCCTCTTCCTGCACGCAACCATCACGGGCGGGGAGATGGGG
GGGGGGGGTATTGGTCATTCTGGGCTTGGTAGGAACGGTGTGGGGACGAG
CGATGGAGAAGAGGGAGTTGGAGAAGCGAGAGAAGCGGGAGAGGGAGGAG
GGGGGGGGTTCGGAGGGCCTGGAGAAAGGGGAGGGAATGGCCGTGATGGG
ATTGGAAGGGGGGAAGGCGCCAGTTTCTTACGGACTTACGGGCGAGAGGG
ACAGTAAATGTCTTATTCTGCTACCATCCAAGGAACAGGAGTAGAACCGC
GAACGTGCTCTGCCGATGGTGAGTCGGCCACCCTGTTGAAGGACGCGATG
ACCCCCGAAAGCCAGAGCCCATCGTCGACCGCGGAAGTCCAAGACACCGC
ATGCAAAGATGCTTCGAATGCCACGGCGGGCACGATGGGTGATTTTGCGA
CTGTGTTCAAGAAATGTTTTGCGAAAACCTGCTTCGTGCACCCCTTGATG
GTCCTGGTCCAGGTCATCTTCTCGGGCTATCACGTTCTCACGTCGAGCGC
ATTGAAGACAAAAGGCGTGAATCCGCTGGTATTCGCCTTGTACCGCGAGC
TGAGTGCGTCCCTTTTCATGGCCTTGTACGCTTGCGTGGCGGTGTGGAGG
GGAAAACACAGATGGCAGCTGGAAACAAGACACATCCCTCGTTTCCTGGC
ATTGGGCCTTTTTTCCGCCGGGAACGTGCTTGGGGCCGTGCAAGCCTTGA
CCCTAATAACCCCCACCAACTTTTCCGTCCTCCAACCCTCCATCCCCGTC
TTCACCATGCTCCTCTCCGTGCTCTTCCGGATGGAACGCCTCACCCCCTT
GAAGGCATTGGGTCTCTTAGCGGCGGTAGCGGGCGCAGTGGTGGTGGAAG
TTGTCCACCCGGCGGGTATTTCCGGCCAAGAAGGAGGAGAGAGCGAGGGA
GGGGATGGCAGCAGCAGCCGCGCAGATTTCATCTCGGGCAATGTCATTGT
CCTTCTCCAATGCCTCTCCATGGCCTCCCTCCTCGTCTTTCAAAAAACGG
CGCTCACGCACTACCACCCCACCGTCGTGACCGCCTGGTACTACTCGATC
GGATCCGTCCTGACCCTCATCATTTGCGTGAGTCAGTCCCTCCCTTCCTC
CGCCTATGCCCTGTCTACCTCCCCGGCGCCTTGGCTGGCACTTGCCTACG
CCGCCTTGCTGGGCACGGCCTTCAACTACAACGCGTACAGCTGGGCAGGT
ACCGTTGTGGCTCCCGGCATCATCTCCATCTACTCCACCCTTCAACCTGT
GGGGACAGCGCTATTGTCCGTCCTCTTCCTGCACGCAACCATCACGGGCG
GGGAGATGGGGGGGGGGGGTATTGGTCATTCTGGGCTTGGTAGGAACGGT
GTGGGGACGAGCGATGGAGAAGAGGGAGTTGGAGAAGCGAGAGAAGCGGG
AGAGGGAGGAGGGGGGGGGTTCGGAGGGCCTGGAGAAAGGGGAGGGAATG
GCCGTGATGGGATTGGAAGGGGGGAAGGCGCCAGTTTCTTACGGACTTAC
GGGCGAGAGGGACAGTAAATGTCTTATTCTGCTACCATCCAAGGAACAGG
AGTAGAACCGCGAACGTGCTCTGCCGATGGTGAGTCGGCCACCCTGTTGA
AGGACGCGATGACCCCCGAAAGCCAGAGCCCATCGTCGACCGCGGAAGTC
CAAGACACCGCATGCAAAGATGCTTCGAATGCCACGGCGGGCACGATGGG
TGATTTTGCGACTGTGTTCAAGAAATGTTTTGCGAAAACCTGCTTCGTGC
ACCCCTTGATGGTCCTGGTCCAGGTCATCTTCTCGGGCTATCACGTTCTC
ACGTCGAGCGCATTGAAGACAAAAGGCGTGAATCCGCTGGTATTCGCCTT
GTACCGCGAGCTGAGTGCGTCCCTTTTCATGGCCTTGTACGCTTGCGTGG
CGGTGTGGAGGGGAAAACACAG

Synonyms

Publications