rna4721, rna4721 (mRNA) Nannochloropsis gaditana

Overview
Namerna4721
Unique Namerna4721
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1615
Alignment locationCM002464.1:178970..179842 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100691g1.2996.mrna
Orig protein idgnl|cribi|Naga_100691g1.2996
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:178970..179842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100691g1gene4558Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25962.1cds4709Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4721rna4721-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4721 ID=rna4721|Name=rna4721|organism=Nannochloropsis gaditana|type=mRNA|length=1615bp
ACCCATAGCTACTCACAGAGCCCTCCACGAGTATGCCAGCAGCCAAGTCT
AGAAGGTCGCGGCTTTCCTACCGATGTCTGGGAGCCTTCTTCGCTTTGGC
CCCCGCCCCCGGGGCCGCCTTCGCCCCTCTCTCCATGCCCTCCCCTTTCC
TGCAAAGTAGAAGACACGTCCCTTCCGCCTTCTTTCCCAACCCATCGACT
CTTCCCACTCCTTTCGCCTCTGTTTTCCCTCTTCATGCCGCAGCTGAGGA
GCAGGAATCCGGGCAAGGAAAATCCTCGTCGGGACCGAAAGGTTTTGGGA
GAAAGACGCCGGCCCAGGAGCCATCACCCTCTTCCTCCCCCGCCTCAACC
TCTTCCTCAGAGCCAGATGGCCCTTCAAACCCACTGTCAGCCTCGCAGGC
TTCCCTTCAGGAACTTGACCGTTTGAATGCTCGGCAAAAGAAAACGTATT
GGGAAATTCAGAAAGAAATGGAGCGGGAAATGGACATGCGGGAGATCGAC
GAGTACAAGGAAACCCAGCGTTTGCTTGACGAAGGAGTGGTGGGGTACCT
GCCAGAACGCATCTCCAACCGTATGCTCAAACGCCTGTTGCCTTTTATTC
TCTTCCCTGTCCTGGGTGGGATCGGTCTTTTCGGGTTTTATTTGTACTTG
GCGAAAAACACCGAGATCGACGTCCCTCCAGCATTTGTGGCTTTTTCCAC
ACAAGTGCCTTTCCTGGCCGCGTTAGTCGGCATCACGTATTCGATCATGT
CGACGAGTTGGGAGCCAGAGGTGGAAGGCTCATTCTGGGGGTTTACGGAG
TTCAAAGCAAACGTGTTGAATCTTCTAGATTCGTTGCAGAAGACCAAGAG
GGAAGAGAGCGCCAAGGAAAAGATGGAAAAGTACTCGGGTTCCAGAGGAC
CCAACCGGGCCAAGCGGCGCGAGCTCGATCGCCTCTCCAAGTAAAGCCAG
AGCGCAAAGCGAGCATGCTGGTGCAGTCAGAGGAGTCGCGTGGTTTAGAG
AAAGGAGATGGTCGTGCATTGTGAGAGCCGTGGAGAGTTTACTTCCAAGA
GGCAAGGTTGACTTTAGCTTTACAGCTACTTCAGGGAAGATTCTGGCAGA
TTTTAAGATTCTAAGATTCTGGCAGGAAAGTGTATTTCATGCCTAAGTTG
AGTGGAATTTAGCATTTTGAATGTTGTAAAGGGCTCGTCAACACGAGCAT
AGCCCTGATTACGCCCGTCTCATTTTTCTGCTCCCGTCCTTCCCGAGTAC
ATTCTCCACAACCTCTTCCTTCTTCCCCTCGCTGCAGAATGCAAGGAAGT
CAAGGCACACATGATAATTTAATGGCAGAGCGCCATGAGGGTTGCACATC
GAAAATCGATTAATTCAGCATCCTGCAGGAGGAAACTGTAAGGAGATAAT
TAAGATGTCCGGATGTAGTCAACTTTTCTCTGCTGTATCGCACATTTTTT
TTACGAGAGAGCGTCAGTGTCAACCTCTACCTGAGAAAGGGTCACATTAT
TAAGTGTGCTTTAGACCTTCACATTCAAAACTTGCATTCGTGAGAAAGCT
ACCGCTGTAGAAAAAAAGCATGGGCCGAAGTTAACCTCCCCTCCCCTTGA
CCTTGCTGCATTCTT
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protein sequence of rna4721

>rna4721-protein ID=rna4721-protein|Name=rna4721|organism=Nannochloropsis gaditana|type=polypeptide|length=274bp
MHLMPGKRGIGSRHRNDSRCRHRFCLQKDLPGSILLLHLLLCLTTTSLPM
LVHAFPFHPASASRLFQRATLRARYWAPWSASTRPLTPAFSFPPGGYAGR
GGAKGRAGGNDKGKDGGKGGREGGYAYSGRAPRGGGREDGHEAGNGGRRE
GGRSERGREKGGYEGGRNAEFGGRGGRGGGRGGGKEASWGSGRGQKWEGG
KKEGVRGGRYQERDWPKGGGRGREGRMEGGGRKGGYSSSLEWSYDAPGPG
DGAGEEDWEDGREGGREGGRVGGG
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mRNA from alignment at CM002464.1:178970..179842-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4721 ID=rna4721|Name=rna4721|organism=Nannochloropsis gaditana|type=mRNA|length=873bp|location=Sequence derived from alignment at CM002464.1:178970..179842- (Nannochloropsis gaditana)
ATCAACCAACGCACTTTCGCACCTCTTATTAACCATACGTGTATCCGTAG
ATGCATTTAATGCCCGGTAAGCGTGGCATCGGCAGCCGCCACCGCAACGA
CAGCCGTTGTCGGCATCGCTTTTGCCTTCAAAAGGACCTTCCTGGCTCCA
TCCTCCTCCTTCACCTCCTCTTGTGCCTCACCACCACCTCATTGCCCATG
CTCGTTCACGCCTTCCCCTTCCATCCTGCGTCTGCTTCACGTCTTTTCCA
GCGAGCAACCTTACGGGCGCGGTACTGGGCGCCTTGGTCCGCATCGACCC
GTCCATTGACCCCAGCTTTTTCTTTTCCCCCTGGGGGTTACGCAGGACGA
GGTGGGGCAAAAGGACGGGCAGGAGGCAACGACAAGGGAAAAGACGGGGG
GAAAGGGGGAAGAGAAGGAGGATATGCCTATTCTGGACGAGCACCGAGGG
GTGGTGGGCGGGAGGATGGACACGAGGCGGGAAACGGCGGACGCCGGGAG
GGAGGAAGGTCTGAACGGGGGAGAGAGAAGGGGGGATATGAAGGGGGGAG
AAACGCAGAGTTCGGAGGTCGAGGAGGAAGGGGAGGAGGAAGAGGAGGAG
GGAAGGAGGCAAGCTGGGGCTCAGGCCGGGGCCAGAAGTGGGAGGGGGGA
AAGAAGGAGGGGGTCCGGGGTGGGAGGTATCAGGAGAGGGATTGGCCGAA
GGGGGGGGGGAGGGGGCGAGAAGGAAGGATGGAGGGAGGGGGACGGAAGG
GAGGATATTCGTCCTCACTGGAATGGTCTTACGATGCCCCTGGTCCAGGG
GATGGGGCAGGGGAGGAGGATTGGGAAGACGGCAGGGAGGGAGGGAGGGA
GGGAGGGAGGGTAGGAGGAGGGA
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Coding sequence (CDS) from alignment at CM002464.1:178970..179842-

>rna4721 ID=rna4721|Name=rna4721|organism=Nannochloropsis gaditana|type=CDS|length=823bp|location=Sequence derived from alignment at CM002464.1:178970..179842- (Nannochloropsis gaditana)
ATGCATTTAATGCCCGGTAAGCGTGGCATCGGCAGCCGCCACCGCAACGA
CAGCCGTTGTCGGCATCGCTTTTGCCTTCAAAAGGACCTTCCTGGCTCCA
TCCTCCTCCTTCACCTCCTCTTGTGCCTCACCACCACCTCATTGCCCATG
CTCGTTCACGCCTTCCCCTTCCATCCTGCGTCTGCTTCACGTCTTTTCCA
GCGAGCAACCTTACGGGCGCGGTACTGGGCGCCTTGGTCCGCATCGACCC
GTCCATTGACCCCAGCTTTTTCTTTTCCCCCTGGGGGTTACGCAGGACGA
GGTGGGGCAAAAGGACGGGCAGGAGGCAACGACAAGGGAAAAGACGGGGG
GAAAGGGGGAAGAGAAGGAGGATATGCCTATTCTGGACGAGCACCGAGGG
GTGGTGGGCGGGAGGATGGACACGAGGCGGGAAACGGCGGACGCCGGGAG
GGAGGAAGGTCTGAACGGGGGAGAGAGAAGGGGGGATATGAAGGGGGGAG
AAACGCAGAGTTCGGAGGTCGAGGAGGAAGGGGAGGAGGAAGAGGAGGAG
GGAAGGAGGCAAGCTGGGGCTCAGGCCGGGGCCAGAAGTGGGAGGGGGGA
AAGAAGGAGGGGGTCCGGGGTGGGAGGTATCAGGAGAGGGATTGGCCGAA
GGGGGGGGGGAGGGGGCGAGAAGGAAGGATGGAGGGAGGGGGACGGAAGG
GAGGATATTCGTCCTCACTGGAATGGTCTTACGATGCCCCTGGTCCAGGG
GATGGGGCAGGGGAGGAGGATTGGGAAGACGGCAGGGAGGGAGGGAGGGA
GGGAGGGAGGGTAGGAGGAGGGA
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Synonyms
Publications