rna471, rna471 (mRNA) Nannochloropsis gaditana

Overview
Namerna471
Unique Namerna471
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2611
Alignment locationCM002455.1:1177388..1178326 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100003g1.1719.mrna
Orig protein idgnl|cribi|Naga_100003g1.1719
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1177388..1178326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100003g1gene454Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30202.1cds471Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna471rna471-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna471 ID=rna471|Name=rna471|organism=Nannochloropsis gaditana|type=mRNA|length=2611bp
AACACGAGCACGAGCACGAGCCCTGGGTGACCTGGTTGCGACTAGATTGT
GTCTATAATTTTTCCCTGCGAAACGGGGTATTCTTCCAGATAAAGAGCGT
CTTTTAAATTTCAATCAGCGTGGCAAAGATCAAGATACTTGCAGCTACGC
TGTATGGTATTTTTGCATTGTAAAACCTGCGCTTTTTCACATCAAATGCC
TGTTCCCCAATTCAGACAGGACTGTTGACCGTGCAAGACAAGTAAGAATA
AAGAGCTGCGACACAACGAAAGGAAAGGATGACTGTCGATTTGCAAAACA
TGACCGTCCCTGAGGACGTTATGGCGGAACTAGGAGCCAAGATCGCGCAA
CACCCTACCCTAAGCCACCATTCTTCTCCCGCCGTGCTCTCCCGAATGCT
ACTCGCAAGGCACTTGCATGTAGATGACGCCTATGTGCTATGGGAAGGAT
GGGCCGCCTGGCGCGAGGATGAGAAACCAGAATTGATCGACGAAGCAAGC
GTCGCCCCTCAGCTTGCGGTACAGACCGTCTCCGTCACCGGAATGGACAA
GAGCGGACGCACATGCGTCATTTTACGCACACGCAACCATGTTCCAGGCC
AGTTTCCTTTCGAGGATATGTTGCGTTTGACGATATGGGTACTGGAGACA
TCTACCTCCCGGTCCGTGAAGACCTCGGGGACTGGCTACATTACCGCCAT
ATGGGACTGTAAAGGGCAAGGTTTCCGCAATTTAGACACCGCGTTAGCCA
CACACAAGCCGGGTATAATTCATATCATGAAGGAGTACTATCCAGAGTGC
TTGCAGACCCTTCTCATCGTCAACAGCAACTGGGTCTTCCGGGTGTTTTG
GACGGTCATTTACCCCTTCATCGACGAGCGGACTAAGCACAAGGTGCACG
TGCTCAAGGACGAAGCGGCCCTCCTCGAGTACTTCCACCCGCAGGACCTC
CCATCGGACTTCGCCCACCTGGCCAAGTAGGATGTATCGCGGGAGAGCGA
CGGGAAGGATTTTGGCGCGGATCGTGGGGTAGGGCGTGGAAGGGAAGGAC
AAAGAGCCCAGACAGCGAGGACGGGGTAAGGAACGGAGGGTTGAGAGGGT
GGCGGCGGAGTGACGTGACTGCTGAGGGAAGACTCACAAACATTTAAATG
AGCGTGTGCTCGAAATTATCTTTGTATGTAAATGACGCGGGGGCGCCGGG
GGAATGTGGCGCTGTCACTGCTGTCCATTTCGCGAGCGTAAGAAAAGCGA
AAACTCTAGATGGCAGACATAGCACCATTGGTAAAGGATGGGGCAAAGAG
GGTTAGGCATGTAAGAAAGCGCGAAGGTCGCGGAAGGGGGGGAAGACAAA
GGCCCTCCAAATGAGGCAATGGGCAATGGATCTGCGGGCGTGGTTAAGGA
AGGACGGCGACAAGGGGAGTCGTGGACGTCTCGGGGAGCTGAGAGGAGGT
GACTTGATAATCGGAGGAGAGAAAGGCGCGCGACTGGTGAAAGGCTTGCG
CAGGAAGAAAAAACGGAGAAGGAAGAGGTAAACGGGTTTGGAAGTGTGGA
TGTACATTTCTGGTGCATTGAAGTTCGGACAGTACTTCGATGGTGAAGTG
AAATCGGGCGACGGCAATCGTGCGTCTCGTTTTTTGCGTTCAAAGGTACG
TTCGATGCACAGAAATTCTTTCTTTATCTCCGTCAGATGCTTGGTCCAGG
GACCTCATTCATATCTGCGCATATTCGTGAATATCGCCAGATGGGCTGTA
CCCGTACATCTGCATTCACACACCAACATCTGGCCAAATTTCGCCTTTTC
AATTGTCCGCGTTGATCACTTCGCAACACTCGTCTGTGTACATATACTGA
TTCACAACCCCAATGTCCAAATCGGCGAAATACGGCACTGAAGGTGAATC
ACTTCGCCCTGGCACCTCACTATTGAGGCATGTCTGCGGCCTTCGAGCCC
ATCGGTCTGTGATCGTCTCGTATGAATGCAGCGGCGGCGTACTCATTAGA
TTCAATGCCACGTACACAATGCTGGAGAGCGCGTAGGAGACGCACAGGAA
AGCTGGTAATGAGAGGGCCCACTCCTTGTGCGGGTAATAGGTGACGCCCA
TTGCATGAAGCCAGGCCTCCGGAATGTAAACCCACATGAGAAAGAGCCCT
GTTCATGTGCATGGACAAAGATGTTGGCCCAAACGTCAAAAATAACGCTG
CAGATAACTATGGGGACCTGACCCCAGGCAACGGGGTGTGTGATCTAGGC
AGGAAGGGAGATGCAGGTCGATAACGCGAAAAAATGTCATCAAGACGTAC
CAGAAACCACAAATGTGCCAATCCACCCCGCAAAGCCATATGCTTCCACT
TTTCTCATCCTGAGATGTTGGTAGCTGTTTTCAGATCAATTATTCTCCTT
CGATGCGTGGGCCGTACCGTTGGGGGACCGACGCATCGCGGCCTCCCTTT
TGTTGTATTCCGTCGTGACACGCGTCCTGCCAAAGTGATATTTTGAAAGA
AGTTCGCGTAAAGGTCAGTAAATCTTTATTTGCATCATTCCAGACACAAT
TATCAAAGTGGAAAGCGCTCACAAAGTAACAAACAGTGTGCAGTAAAAAA
TTCGTCGACTA
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protein sequence of rna471

>rna471-protein ID=rna471-protein|Name=rna471|organism=Nannochloropsis gaditana|type=polypeptide|length=270bp
MEEREGGGRGGRERGGGETGDEGGEREEGGEEGGEEGGEARPRSALPGLG
EAPGSGLSRGDRSGGTNGTGAVARPKKKSAQPRATGPSGWAKALAAAGGG
SSGGRVVQGRRPGGITLVRFKSTEGEHGRQARGAAAFAPSGQPEASTAPR
AAGIDAGSFPGPRGDGVDRGGLPSPPLTHVAFPREAPPGLGLPVVATRTD
DNFPALSGASESASGGSHGPRGGWIGKVARDAEEEETPYANGGNTTVGKK
KKKQQAKKKNELQLAAFNFG
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mRNA from alignment at CM002455.1:1177388..1178326-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna471 ID=rna471|Name=rna471|organism=Nannochloropsis gaditana|type=mRNA|length=939bp|location=Sequence derived from alignment at CM002455.1:1177388..1178326- (Nannochloropsis gaditana)
ATGGAGGAGAGGGAGGGGGGGGGGAGAGGAGGGAGGGAGAGGGGGGGCGG
GGAGACGGGGGACGAGGGAGGGGAAAGGGAGGAAGGGGGGGAGGAAGGGG
GGGAGGAAGGGGGGGAGGCGAGGCCCCGGTCCGCGCTCCCTGGGCTAGGG
GAGGCCCCCGGATCTGGCCTCTCCAGAGGCGACCGAAGCGGCGGGACGAA
CGGGACAGGCGCGGTGGCGAGGCCCAAAAAAAAGAGCGCGCAGCCTAGAG
CGACGGGGCCGAGCGGGTGGGCCAAGGCCCTGGCGGCCGCCGGAGGGGGT
TCAAGCGGGGGCAGGGTGGTGCAGGGTCGGAGGCCTGGGGGCATCACGCT
GGTGCGTTTCAAATCGACAGAGGGGGAACATGGAAGGCAGGCGCGTGGGG
CCGCTGCTTTCGCTCCGTCGGGACAGCCTGAGGCCTCGACGGCCCCCCGG
GCGGCGGGAATAGACGCGGGTTCATTCCCTGGTCCTCGGGGAGACGGAGT
GGACAGAGGCGGCCTTCCTTCACCGCCATTAACGCATGTTGCCTTCCCGC
GAGAAGCGCCGCCCGGCCTGGGCCTCCCTGTCGTTGCGACGCGGACAGAC
GATAATTTCCCCGCCTTGTCGGGCGCTAGTGAGAGCGCTAGCGGGGGATC
GCACGGACCCCGCGGGGGCTGGATTGGCAAAGTGGCTCGGGACGCCGAGG
AGGAGGAGACCCCGTACGCGAACGGCGGCAACACGACCGTGGGAAAGAAG
AAGAAGAAACAGCAGGCGAAGAAGAAAAATGAGCTTCAGCTAGCGGCCTT
CAATTTTGGATGAAAGTAGACGTAGGATTCCACGTTGAAGTGGACGGGGG
AAATGTTTCACAAATTCGCGAAGATCAAGTGCCACGGCACATGTAAATCA
AGCAAAATAATTTATAGGAATTATGGTTCACATTTCAGG
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Coding sequence (CDS) from alignment at CM002455.1:1177388..1178326-

>rna471 ID=rna471|Name=rna471|organism=Nannochloropsis gaditana|type=CDS|length=813bp|location=Sequence derived from alignment at CM002455.1:1177388..1178326- (Nannochloropsis gaditana)
ATGGAGGAGAGGGAGGGGGGGGGGAGAGGAGGGAGGGAGAGGGGGGGCGG
GGAGACGGGGGACGAGGGAGGGGAAAGGGAGGAAGGGGGGGAGGAAGGGG
GGGAGGAAGGGGGGGAGGCGAGGCCCCGGTCCGCGCTCCCTGGGCTAGGG
GAGGCCCCCGGATCTGGCCTCTCCAGAGGCGACCGAAGCGGCGGGACGAA
CGGGACAGGCGCGGTGGCGAGGCCCAAAAAAAAGAGCGCGCAGCCTAGAG
CGACGGGGCCGAGCGGGTGGGCCAAGGCCCTGGCGGCCGCCGGAGGGGGT
TCAAGCGGGGGCAGGGTGGTGCAGGGTCGGAGGCCTGGGGGCATCACGCT
GGTGCGTTTCAAATCGACAGAGGGGGAACATGGAAGGCAGGCGCGTGGGG
CCGCTGCTTTCGCTCCGTCGGGACAGCCTGAGGCCTCGACGGCCCCCCGG
GCGGCGGGAATAGACGCGGGTTCATTCCCTGGTCCTCGGGGAGACGGAGT
GGACAGAGGCGGCCTTCCTTCACCGCCATTAACGCATGTTGCCTTCCCGC
GAGAAGCGCCGCCCGGCCTGGGCCTCCCTGTCGTTGCGACGCGGACAGAC
GATAATTTCCCCGCCTTGTCGGGCGCTAGTGAGAGCGCTAGCGGGGGATC
GCACGGACCCCGCGGGGGCTGGATTGGCAAAGTGGCTCGGGACGCCGAGG
AGGAGGAGACCCCGTACGCGAACGGCGGCAACACGACCGTGGGAAAGAAG
AAGAAGAAACAGCAGGCGAAGAAGAAAAATGAGCTTCAGCTAGCGGCCTT
CAATTTTGGATGA
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Synonyms
Publications