rna4689, rna4689 (mRNA) Nannochloropsis gaditana

Overview
Namerna4689
Unique Namerna4689
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1111
Alignment locationCM002464.1:65880..66221 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100897g2.3248.mrna
Orig protein idgnl|cribi|Naga_100897g2.3248
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:65880..66221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100897g2gene4527Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4689rna4689-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25997.1cds4677Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4689 ID=rna4689|Name=rna4689|organism=Nannochloropsis gaditana|type=mRNA|length=1111bp
TGATACTAATATGCAGGCATAAAACAGCCCGACGATATCGTAAGATCTCT
CGAGTGAACCAGCGTACTATATGGATTGGGAACAGATGGAGCTAGGTTGG
GGTGTTTAGATATTATGTGGCGAATAGCATCAAAAAATGTAGTGAGGCAT
GTGGTTGAATCTTTTTGCTCTGCCTTGCTGTCCTTCATGTTCTGTTTGCT
GTCGCCCCACTTCTTGGCTTACGATCTCGTTTTTCCTGACTCACGACGAA
TCCCTTCTGCACATTTTTAGCCAATGTTATCATCGTGTGCCTCGGTATCA
TCTCGCATTGGTTATGCAGCGGCGGCATGTTCATTCAGGCCAGGATCGGT
GCACGTCAGCAAAAGGCTCTTCTCGCCTCGCGTGGCTTCTTCGTCCTTCG
CAACCCACGCATACCCCACTTCGTCTGCCTTTTCATTGCCCACGCATGAT
TCATCGAAACAGTCGCGTGCTCATGATCTGCGCCGACGTCCTCACCGCAT
GATGAGCACTACGACTCCGCCGCCCCCGGGACAGGCGACCCAACAATCAT
TTTTCAATTCTCCGGCGACGGCGTCCTCGTTTTCCAGCACCGACAAGCCC
ACTCCTTTCCGAGATGCCTTGGAACAGTTGCAGGCTTTTCCGGAGATCAA
GGATGCTGCTAAGCTACGCGAGGAGCACCATTTTGTCCGAGCTCTCCCTT
TGATGCAGCGCGCCATCGAAGTTCTCGACACGAATATGGGCAAGGGGACT
CTCCTCGCTGAAGCGGCACGCTATCAGCTGGCGCTCTATCACATCGAAGC
CGGGGAGTTCAAGCAAGCACATGCCTTGCTCCAGGCCCTGCTGGAGGATG
TCCAGCCGAGCAAAAACGCAGTGCACGATATCTTCACAGTCCATCTCCTG
CTAGCGGGCTCGGCGCTCTTACAGGATCAGTTGCCCAGCGCTGGATCGGC
CGCAGAGGAAGCTTTGGCATTTGTCGAGGTACGGCCAAGGCTTACGTAGA
AGGCGGTCGACAAGGGCAATGTCTGTCGTCTTGGGGGGGCTGGAGGGTAT
CGCCGGGGGAGGGAGGGGGCGAGCGAAAAACTGGGGGAGTCCCCATCTCA
CCCTCCCTCCC
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protein sequence of rna4689

>rna4689-protein ID=rna4689-protein|Name=rna4689|organism=Nannochloropsis gaditana|type=polypeptide|length=70bp
MLPISIELYRQPELQGFLEDMCLLRLEIKSISGRSDWKKGCAVYLIYTRT
TLGHMSVVAPLTSFLWYLGF
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mRNA from alignment at CM002464.1:65880..66221+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4689 ID=rna4689|Name=rna4689|organism=Nannochloropsis gaditana|type=mRNA|length=342bp|location=Sequence derived from alignment at CM002464.1:65880..66221+ (Nannochloropsis gaditana)
ATGTTGCCGATCTCCATTGAATTATATCGTCAACCCGAGCTTCAGGGATT
CTTGGAGGATATGTGTCTATTAAGGTTGTTCATCTCGAAATAAGGAGGAC
CGGGAAACAAGCAGTTCCATTAACTTGTTCAAGACATGAATGTTGCttga
ggagaggatgagatTCATAATATTGTGACGGGGTGGTCTTTTCACGTTGT
CTTAAGGGAGATAAAATCCATTTCGGGCCGGTCGGATTGGAAAAAAGGCT
GTGCTGTCTACCTGATCTATACTCGCACAACTCTTGGTCACATGTCAGTC
GTTGCGCCATTGACTTCCTTTTTGTGGTATTTGGGCTTCTAG
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Coding sequence (CDS) from alignment at CM002464.1:65880..66221+

>rna4689 ID=rna4689|Name=rna4689|organism=Nannochloropsis gaditana|type=CDS|length=426bp|location=Sequence derived from alignment at CM002464.1:65880..66221+ (Nannochloropsis gaditana)
ATGTTGCCGATCTCCATTGAATTATATCGTCAACCCGAGCTTCAGGGATT
CTTGGAGGATATGTGTCTATTAAGGTTGGAGATAAAATCCATTTCGGGCC
GGTCGGATTGGAAAAAAGGCTGTGCTGTCTACCTGATCTATACTCGCACA
ACTCTTGGTCACATGTCAGTCGTTGCGCCATTGACTTCCTTTTTGTGGTA
TTTGGGCTTCTAGATGTTGCCGATCTCCATTGAATTATATCGTCAACCCG
AGCTTCAGGGATTCTTGGAGGATATGTGTCTATTAAGGTTGGAGATAAAA
TCCATTTCGGGCCGGTCGGATTGGAAAAAAGGCTGTGCTGTCTACCTGAT
CTATACTCGCACAACTCTTGGTCACATGTCAGTCGTTGCGCCATTGACTT
CCTTTTTGTGGTATTTGGGCTTCTAG
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Synonyms
Publications