rna4687, rna4687 (mRNA) Nannochloropsis gaditana

Overview
Namerna4687
Unique Namerna4687
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length312
Alignment locationCM002464.1:62047..63796 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101167g1.3646.mrna
Orig protein idgnl|cribi|Naga_101167g1.3646
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:62047..63796 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101167g1gene4525Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4687rna4687-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25999.1cds4675Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4687 ID=rna4687|Name=rna4687|organism=Nannochloropsis gaditana|type=mRNA|length=312bp
ATGCCAGCAGTGGATGCCATCTTCACGAGCGGGGGAACCAGCTTCGCCCC
TAGAGACCTGACGCCAGAGGCTGTTCGTCCTCTGATCGACAAGGAAGCTC
CTGGGATGGTGTGGAGGATCATGGAGGTGGGGACGAAGCACACGCCCTTC
GCGGTGCTCTCTCGCCCCGTGGCCGGGGTGCGCGGTGGGACCTTCATTGT
CACCTTGCCGGGGAGTCCGAAGGCAGTAAAGGAGAACCTCGACACGCTCC
TGCCCCTCCTTCCCAAGGTCTTCGGTCTCCTGAAGACGGCTACGTGTGAT
CACAAGGCATAG
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protein sequence of rna4687

>rna4687-protein ID=rna4687-protein|Name=rna4687|organism=Nannochloropsis gaditana|type=polypeptide|length=128bp
MDENLSKALKLYEKYLSPSDPRMGQVLVAIGQHRHMIGQAVSAEGLFRSV
IDLLSTPSGLASPQLRYSLYRAYYGYGNLLADWEGRERDAAHMREKASQV
KVLRLNPYVPLSPMVFVEGQDPGEVDYF
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mRNA from alignment at CM002464.1:62047..63796-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4687 ID=rna4687|Name=rna4687|organism=Nannochloropsis gaditana|type=mRNA|length=1750bp|location=Sequence derived from alignment at CM002464.1:62047..63796- (Nannochloropsis gaditana)
CCCTCCTCCCCTCCCACTTTTTCTCCCTCCTGACCTCCCTTTTCCCTCCC
TTTGTATGCCCTGTCCTCTCCTCTTCTCCTCTCCTTTACTTGTTGTTTTG
TGGCCTGATTGCACACTGTACATTCATATATCTTGTCGTCCTTGCCCCCC
CTTCTCCCTCCCATTTTTTCTTAGGTCTATTTGGGGGATAAAGGTGGCGA
AGAGGGAGCTAAGCTCAAAGATCTGACCAAAATGGACGAAAACTTGTCCA
AGTGAGATTTCTGTCTTGGCTTTCTTCTTCCGCCCTCCCTCCCTTCCTCC
CTCCCTTCCTTTCCCTTGTCTCTCCTCCAACAAGCGTCGCACTCACGTCT
CGATGATTCCTGCGCTTTATATTCTCCCCCTCGCCCCTGCTAACCAGGGC
TCTGAAGCTCTACGAAAAGTATCTCTCCCCTTCGGATCCTCGTATGGGCC
AAGTGCTCGTGGTACGTGTCAGGAAATTTCCTCCCCCCCCCCTCTCCCTC
CTTATGTCTCCTCCCTTTGCTCGTCCCGACCCGAATGGCATCACATCGGG
TCCTAGAACTCTCCTCAGGCCTCCGGGGGTCCCTCTCACAACCCTCCCTC
CCTCCCTCCTCCAGGCCATCGGGCAGCACCGGCACATGATTGGGCAAGCT
GTTTCCGCGGAGGGCCTTTTCCGCTCCGTCATCGACCTCCTATCGACGCC
TTCCGGCCTGGCCTCCCCACAACTGCGCTACTCGCTCTACAGGTGGGCCG
CACGGGTGGAAGGAGGGGAAGAGGGGGGGTTGTGAGAGGCGATGGGAACG
GAAGGGGGCGAGTCAAACGGGAGGGGCGGCATGGGGACTATTTGGAAAAT
GGTTTAAGGCAGAGAAGTTTTTATCAATGCGATGGACCTCTGGCATCCAC
AGGGCTTACTACGGCTACGGAAACCTGCTGGCGGATTGGGAAGGACGGGA
GAGGTAGGCCATGAAGGCTTCTAGGCGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGAGAGGGAGGGAGGCATATGCGATGGTTTGAAGGGCGGACGGC
GTTTGCTTCTCGAGTCTCTGTGACGTGTATGGGCGTTGGAAGCGCCTTAC
CCAGGGTCCTTCTGTCGCCTGAGGGCCTCCCTCTCCTCCCAATCCTCTTT
CCCGCCCATTTCTCCACAGGGACGCAGCCCACATGCGTGAAAAAGCGTCG
CAGGTGAAGGTCCTCCGGCTCAATCCCTACGTACCCCTGTCGCCCATGGT
CTTTGTGGAGGGACAGGATCCGGGCGAAGTGGACTATTTCTAGGGAAAGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAATTATGGGGGCGG
GGTTTGAGAAGGAGGTGTTGTAAGTGTGTAGGTGAGGAGGGGTCAGGATC
GGGTGGGGGGTCAATAGGAAAATCAGATGAGACTTGAGGGACGATGTGTA
GTGATTTCAACAGAAGCGGGAGGAAATGACAGAAGACGAGCCTGTGTATG
AAGCAGGAAGGAAGGAGGATGGAAAGAAGGGAGGGAGGAGGGCAAAAAGA
GATGAAGAAAGCCATGGAGTGGCGACTGGAAAGATCAAGAAATCAAGAGA
AAACTAAAATCGAAGCGTCGGCTGTATAAATCTCTGTTTTAAAAGAGTAC
GGGACGTATCAAAAAAGCGCTGTTTGAGGTATTCTGGTCTGAGAGAGTTT
TGGATGTCTCCTTGCATCCTGGCACGTCTACTCCACGAGCGCTGCCCCCC
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Coding sequence (CDS) from alignment at CM002464.1:62047..63796-

>rna4687 ID=rna4687|Name=rna4687|organism=Nannochloropsis gaditana|type=CDS|length=1935bp|location=Sequence derived from alignment at CM002464.1:62047..63796- (Nannochloropsis gaditana)
GGACGCAGCCCACATGCGTGAAAAAGCGTCGCAGGTGAAGGTCCTCCGGC
TCAATCCCTACGTACCCCTGTCGCCCATGGTCTTTGTGGAGGGACAGGAT
CCGGGCGAAGTGGACTATTTCTAGGGCTTACTACGGCTACGGAAACCTGC
TGGCGGATTGGGAAGGACGGGAGAGGCCATCGGGCAGCACCGGCACATGA
TTGGGCAAGCTGTTTCCGCGGAGGGCCTTTTCCGCTCCGTCATCGACCTC
CTATCGACGCCTTCCGGCCTGGCCTCCCCACAACTGCGCTACTCGCTCTA
CAGGGCTCTGAAGCTCTACGAAAAGTATCTCTCCCCTTCGGATCCTCGTA
TGGGCCAAGTGCTCGTGATGGACGAAAACTTGTCCAAGGACGCAGCCCAC
ATGCGTGAAAAAGCGTCGCAGGTGAAGGTCCTCCGGCTCAATCCCTACGT
ACCCCTGTCGCCCATGGTCTTTGTGGAGGGACAGGATCCGGGCGAAGTGG
ACTATTTCTAGGGCTTACTACGGCTACGGAAACCTGCTGGCGGATTGGGA
AGGACGGGAGAGGCCATCGGGCAGCACCGGCACATGATTGGGCAAGCTGT
TTCCGCGGAGGGCCTTTTCCGCTCCGTCATCGACCTCCTATCGACGCCTT
CCGGCCTGGCCTCCCCACAACTGCGCTACTCGCTCTACAGGGCTCTGAAG
CTCTACGAAAAGTATCTCTCCCCTTCGGATCCTCGTATGGGCCAAGTGCT
CGTGATGGACGAAAACTTGTCCAAGGACGCAGCCCACATGCGTGAAAAAG
CGTCGCAGGTGAAGGTCCTCCGGCTCAATCCCTACGTACCCCTGTCGCCC
ATGGTCTTTGTGGAGGGACAGGATCCGGGCGAAGTGGACTATTTCTAGGG
CTTACTACGGCTACGGAAACCTGCTGGCGGATTGGGAAGGACGGGAGAGG
CCATCGGGCAGCACCGGCACATGATTGGGCAAGCTGTTTCCGCGGAGGGC
CTTTTCCGCTCCGTCATCGACCTCCTATCGACGCCTTCCGGCCTGGCCTC
CCCACAACTGCGCTACTCGCTCTACAGGGCTCTGAAGCTCTACGAAAAGT
ATCTCTCCCCTTCGGATCCTCGTATGGGCCAAGTGCTCGTGATGGACGAA
AACTTGTCCAAGGACGCAGCCCACATGCGTGAAAAAGCGTCGCAGGTGAA
GGTCCTCCGGCTCAATCCCTACGTACCCCTGTCGCCCATGGTCTTTGTGG
AGGGACAGGATCCGGGCGAAGTGGACTATTTCTAGGGCTTACTACGGCTA
CGGAAACCTGCTGGCGGATTGGGAAGGACGGGAGAGGCCATCGGGCAGCA
CCGGCACATGATTGGGCAAGCTGTTTCCGCGGAGGGCCTTTTCCGCTCCG
TCATCGACCTCCTATCGACGCCTTCCGGCCTGGCCTCCCCACAACTGCGC
TACTCGCTCTACAGGGCTCTGAAGCTCTACGAAAAGTATCTCTCCCCTTC
GGATCCTCGTATGGGCCAAGTGCTCGTGATGGACGAAAACTTGTCCAAGG
ACGCAGCCCACATGCGTGAAAAAGCGTCGCAGGTGAAGGTCCTCCGGCTC
AATCCCTACGTACCCCTGTCGCCCATGGTCTTTGTGGAGGGACAGGATCC
GGGCGAAGTGGACTATTTCTAGGGCTTACTACGGCTACGGAAACCTGCTG
GCGGATTGGGAAGGACGGGAGAGGCCATCGGGCAGCACCGGCACATGATT
GGGCAAGCTGTTTCCGCGGAGGGCCTTTTCCGCTCCGTCATCGACCTCCT
ATCGACGCCTTCCGGCCTGGCCTCCCCACAACTGCGCTACTCGCTCTACA
GGGCTCTGAAGCTCTACGAAAAGTATCTCTCCCCTTCGGATCCTCGTATG
GGCCAAGTGCTCGTGATGGACGAAAACTTGTCCAA
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Synonyms
Publications