rna4681, rna4681 (mRNA) Nannochloropsis gaditana

Overview
Namerna4681
Unique Namerna4681
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1426
Alignment locationCM002464.1:52873..53676 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100499g2.1687.mrna
Orig protein idgnl|cribi|Naga_100499g2.1687
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:52873..53676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100499g2gene4519Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26004.1cds4669Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4681rna4681-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4681 ID=rna4681|Name=rna4681|organism=Nannochloropsis gaditana|type=mRNA|length=1426bp
AGCACCACCATAATGTCCGAATTAGGCACGTGTACTGAATTTACCCTTTT
TTCGCAGAGTGCCAAGATAGGGGGCAATTTTAGATGAGGAATCTCTGCCC
TCGGGAACGAGGACGGAGAAGAACGCGCGGAATTGTACTGGTGGTGGTAT
CCGCCATCGTCGCCTCAACGTCAAGCGTGCTACAAGCCCAAGCACTACGA
CATGATCACATCACCAGCTCGGCCACCCAGAATAAAAAATTTCTCAGCTG
TAGCTTTGTTAGCTCTCTCATGCTGCCTTTTGAGCCCGGACGTGCCCTCG
GAAAGAGTTGCACTTTCTTGGTAAAGGCCCACCCCGGGGGTGGTCAAAGA
ACTAGCAAAGAGAAAGGTCGAAGACGAGGTCGTAATGGGGACCTGTCCAC
AACGTCGTCGCTGTCGTTTCCGTCTCCCACTAGGGCTGCTCGTGAGGTTT
TCCCACCCTACGGTGAAGAGCACATTCAAGTGGAGGAGCGTTTAAAGAAG
AAACCAGCACACTGGCCAAGTGAGGTACTCTTCTCACAAAAGTTGAAGTG
GGCCGCTTCCTCAGCCGGCCAGGACGTGAAGGAAGTCTTCCGTCGCCGTC
TACTTCCGGGTATCGAGGTCCGGCGCATCACCGAGCCGTCCCACGTCCTG
CACGGGCAGTATGGAGTGTACGCCACGCGGGCCTTCGCGCCTTTCGACGT
GGTTGGCGAGTACGTCGGCCGCGTCGTCCCCCCGGCGGTGTGCGGGGACT
ACGTGGCAAGCATCGACCAGGACGACGGGCGCTTGCCCCACGGGTCTTCT
CCCTGGGGTGTCGATTCGGCCTTGTACGGGAACGAAGTCCGGATGATCAA
CCATTTTCACCAGATCGGTCCCGTGCCCAACGTCAAGTTTGTCACCGCCT
ACATCGCAGAGCTCCCGCACATCCTGGTTGTGGTGCTGCGACCCATCGCC
GAGGGGGCAGAGATCCTCATCGACTACGGGTGAGTCCCTGAGACTGGCCT
AACCTTTTGGGGACGATTGCATCCGTGCCAATGGGATGCGTTTCTCTTCC
CTTTCCTACTTCCAGGGCGGACTACTGGTGTGGGCGGGACCATCCCCCCC
CCCCCGAGCCCCGTGGGATCGACGACGGTCTCGACGCGGACGTCCTGGTG
GATGGCTGATATCGCGTTGAAGGGGCGCTGGTGAATGGGTGGGAGTGATT
CGATGGATGGTCGATCGGTGAATGTGTGGCCGGTCTTTTTCGGCTTTCGG
AGTTCGCGGACGCGCATCCTCTAGGGGACTGTTTGCGTTCTTAAGGGACG
AGCACATGAGGGTGCTCCGTCTCTGCTGGGCTCTCTCACGAGTTCGTCTA
GGGATGAACGTTGGTCGAATATATACCCGTTCTGGGACGGCAAAGAACAC
AACCACAAGGCCTCGCTCGACCTTTT
back to top

protein sequence of rna4681

>rna4681-protein ID=rna4681-protein|Name=rna4681|organism=Nannochloropsis gaditana|type=polypeptide|length=135bp
METHLSDTDTFARSKPSYASSRAGTSERNFNSLPLPMSFVDLTPSSPCRS
RSRTSFPSLSMQRAAILRPPSMRPTIPFLGTLSAIHRLSRHGRRGGPIKA
YQRAFLVASGQGPCMICWRQSRHRRRNPMKNGSRT
back to top

mRNA from alignment at CM002464.1:52873..53676-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4681 ID=rna4681|Name=rna4681|organism=Nannochloropsis gaditana|type=mRNA|length=804bp|location=Sequence derived from alignment at CM002464.1:52873..53676- (Nannochloropsis gaditana)
GGTTACCGCGGGATTTCATGGAGCAATGCGTGTCGAGTGTCAAGTTGTGT
CATCGTCGCAAGCTTTTATCCGCTCAAATAGCATACTGTGTCCGAAAAGG
CGTCAAAATCCGTTCTCTTCATGAAAAGTACGGGGGCAACGAGGGCACAA
CAATGCAGCACAGCGGGAGCAACAGGGTTCAAAATAGCAGCAATTTCTCA
GAATGGCTGCAGCAATGCTATTATATGAGTCTACCGTACGCAGGCTCGGC
TATAGAGCTACAAGTGGTTTTGTATGCAGGGTCGGGGGAAGACGAGGAGA
GCGACGAGGACGATGAGGAGATCCCGGTGAGAGAGAGGGTGCAAGGAAAA
AGTGAGAACCATGGAAACGCACTTGTCAGACACGGACACATTTGCTAGAT
CAAAGCCTTCCTACGCATCCTCCCGTGCCGGCACCTCTGAACGTAATTTT
AATTCTCTACCCCTTCCAATGTCCTTCGTGGACCTTACCCCCAGCAGCCC
CTGCCGCTCCCGCTCCCGGACATCATTCCCCTCTCTCTCGATGCAGAGAG
CTGCAATTCTTCGTCCACCCTCCATGAGGCCTACAATTCCCTTCCTTGGG
ACGCTCTCTGCCATTCACCGGCTTTCCAGGCATGGGCGGAGGGGGGGGCC
TATAAAGGCATATCAGAGGGCCTTCCTCGTAGCTTCCGGGCAGGGGCCTT
GTATGATCTGCTGGAGGCAATCAAGACACAGGCGAAGAAATCCCATGAAA
AACGGCTCAAGGACTTGATTTTGACGGAAGACGTGCGCTTGGAGGTGGAG
ACAC
back to top

Coding sequence (CDS) from alignment at CM002464.1:52873..53676-

>rna4681 ID=rna4681|Name=rna4681|organism=Nannochloropsis gaditana|type=CDS|length=408bp|location=Sequence derived from alignment at CM002464.1:52873..53676- (Nannochloropsis gaditana)
ATGGAAACGCACTTGTCAGACACGGACACATTTGCTAGATCAAAGCCTTC
CTACGCATCCTCCCGTGCCGGCACCTCTGAACGTAATTTTAATTCTCTAC
CCCTTCCAATGTCCTTCGTGGACCTTACCCCCAGCAGCCCCTGCCGCTCC
CGCTCCCGGACATCATTCCCCTCTCTCTCGATGCAGAGAGCTGCAATTCT
TCGTCCACCCTCCATGAGGCCTACAATTCCCTTCCTTGGGACGCTCTCTG
CCATTCACCGGCTTTCCAGGCATGGGCGGAGGGGGGGGCCTATAAAGGCA
TATCAGAGGGCCTTCCTCGTAGCTTCCGGGCAGGGGCCTTGTATGATCTG
CTGGAGGCAATCAAGACACAGGCGAAGAAATCCCATGAAAAACGGCTCAA
GGACTTGA
back to top
Synonyms
Publications