|
|
Properties
| Property Name | Value |
|---|
| Product | Autophagy-related protein 1010 family protein |
| Orig transcript id | gnl|cribi|Naga_100150g12.10686.mrna |
| Orig protein id | gnl|cribi|Naga_100150g12.10686 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002464.1 | supercontig | CM002464.1:33548..35944 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4675 ID=rna4675|Name=rna4675|organism=Nannochloropsis gaditana|type=mRNA|length=2377bp
TTCTTCATTCAAATCGGGCGAATGGCGTGCGGACCACTCCCAAGAGGAGT
CCAATGAACTTCTTGTCCCGCTTACATATAGACACTTATATAGTAGGGGA
AAAACATGTCCGACGATGAAGGAGAAGTATACGCGTACAGCGACGACGAG
GGCAGCGACGTGGATTACGCATACGGAAGCGACGAGGATCAAGATGAGCA
AGACCACGAGATTGTCAATTCGTACTACGAAGGGGAAGAGTTCATGCAGC
AAAACCAGCTGCCAGAGGCGCTCGAGAAGATGGAGCGGGTGGTAGGGGTC
GCGGCGGAGCGAGGCGGAGACGACCTACGATGGTGCTTCAAAGGGCTGGA
GTGCATCGTTATGCTCCTCTTTAAGCTAGGGGAACACGAGAAAATGCTGG
CAGCCTACGAAAGACTCCTCTCTTACACAAGTGCTGTGACTCGGAATGAG
AGCACGGACGCGATAAACTCGGTGCTGGATACCATCTCGGGCGCCACGGG
GAGCATCGTCGCACAGACGTACGCCAAGACGCTGGCCTCCACCGAGGGAA
ACGAGCGCCTTCATTTCACCACCATGATACGACAAGCGAAAGCCTACCTC
GCCCAAGGGGACTTGAAGGAGGTGGGCCGTGTCATAGAGCGCCTGCACCA
GCTCTGTCGGAACCCCGACGGGTCAGACGATGAGTCCAAGGCTACGTACC
TCATGGAAGTCTATGCCCTGGAAATTTCCTACTGCACGCACACCTGTGAC
ATGGCCCGCATGAAGGAAATCTTGCCTAGGACGCTCAAACTCAACGCCGC
AGTCTCCGACCCGCGCATTATGGGCATCATCCGAGAGGAAGGCGGTAAAC
TCCACATGCGCCAATGTCAGTGGTCGGACGCGTACTCGGAGTTCAACGAA
GGCTTTCGGGCTTATCAGGAGGCAGGAAACAGTCGAGCGAAGCAATGTCT
CAAGTACGCGGCCCTGTCCAACATCCTGGCGAACAGCAGCATCAACCCCT
TTGCAGCCACGGAGGCCAAAGTATACCAGGATGACCGCGAGGTGATGGCC
ATGATGGAGCTTCGCATTGCCTACGACGCCAACGACCTGCCGCGCTTTGA
GAGGACCCTGGAGCACAAACCCAATCACATCCTGGACGATTCCTTCATGG
CCGTTTATATCGAGGAACTGCGGCGGAGGATGCGTGAGCAGGTGCTACTC
AGCATTACACAGCCATACTCGAAAATGACCCTTGCACACGTGGCTAAGGA
GCTCCGGCTGAGTCGTGAGGAGATCGAGTCCCTGTTGGTGGACCTCATAT
TGGACAAGCGCATCAAAGGGCAAATCGATCAGATCGGTGGGTTCGTGCTG
CTAAGGCCCGAGGGACGCTCTTCCTCAGGAAAGCATGCCGCCCTTGCCCG
GTGGGCGGATGCGCTGCAGGCAGGGACAGGGAGCGGGAAATGTGATGAAG
GTGACGATGGGTGGGCGCACTGAACTTTAATAGAAACTCCGTGCAGCCCC
AGCCCTCCCGCCGGCTCGCGTAATTCCGATGTGCTCATATTCCATTTCTT
GTCGGGGCAGGCGAAGAGTTCTTGGCCGCAATTTCTTCCTCCTTGTTTGC
ACCGTTTATGAGTACGACCGCTGTTTCATAGTTTGTTAGGGGGGGAGACA
CCACAGAGAGGCGATGAAAGTCTACTTTGTTACAGCCCTCATGTTTATAA
CTGGATAGATCGACATAAGTAACCCTACTGTTTCCAAAGGAAAATTACTA
GAGTAAAATGCAAAAATGCTTTGAAGTCTGCATTTTTCGAAACAGAGGTG
TATATTTGAACGTTCCTTTGGGTCTGGTTTGGGATGTAAAATACTTGATA
GGCTCACAACGAGGATGGAAGGCATCACATCTGTCTATGATTAGACCGTC
CCAGGAAGGGAGCAAGTGTTGCGCTGCCTCCTAGACGTAGCACCGAGGAC
ACATCAAGCGAGCGACCGATCAAATCAAATGTTTGGAAAGGGTAAGCAAC
CATGTGCATAAGTTATTCTTTACAGCCTGTCTACATGATCCCAGCGCTAA
AGTGGTTGCCCTTTGTATTGTACATCCACGACCGCGCCGATGCTGTGCAT
ATTCACAAGCTGTTGTTGATAAGAGCGGGGCTATTTCTGATTTTGGTCGC
CAAGTCTTGCGCTCGATCCCTAGACGCTGCGCCGTGAGAGATCTGGATCA
AGGTTAGGAAGAGGGTCATCAGCGTTCAGACAGTGGACATAAGGACGGGT
ACTGAAACAAACGATCGACGCCATCACAAGGTAGTACAGTACTAACATTT
GCACAAAATCCAAAGATATACCCATGCAATTGTATCACGAAGCAAGCCCA
CATTTTCAAGTAGTTGAAACTTTTGGA back to topprotein sequence of rna4675 >rna4675-protein ID=rna4675-protein|Name=rna4675|organism=Nannochloropsis gaditana|type=polypeptide|length=260bp
MNHKEHVLGELELRPLHTKEALQCLLHSIIFLRAPNIVRPREVHCRHLRL
SYPKVERPTSSSSSSSPFSVARIDEVVDSALDACLRNLTPAGPNLSRGHL
VLTFYERRQTLSFFRLIQNEERVVFEEWIIPFLVDSMGSTSTLASSLSAS
DDGFVGVHDGELYTEPSSHSSMSTLPPASLYGGGGEDPAIAVEQQRAQAR
TEALLRSRLQDIYTLVNGSIDHIPPVSYLFQISHGAASRDRAQDLATKIR
NSPALINNSL back to topmRNA from alignment at CM002464.1:33548..35944- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4675 ID=rna4675|Name=rna4675|organism=Nannochloropsis gaditana|type=mRNA|length=2397bp|location=Sequence derived from alignment at CM002464.1:33548..35944- (Nannochloropsis gaditana)
AAAAGAGCGCGGGACCTCGCCTCCTGCCGTCGTGCCAGTTTAATCTTGTG
ATTTACAAGGACACATCCCCATTCAGACCAACGAATCGTCGTCCATCCCC
ACGTCTAGATTTGCACGCACGCACAGCACGCAGTCACGTAGTGGACGTCT
GTTGTCAAGCTTGCCTGCGGGTGAGCCGGGCCTGGCGCAAGCCTCTTGCT
GTAGAGGGAGGACTGAAGACACATGAACCACAAGGAGCATGTGTTGGGGG
AGCTAGAACTTCGCCCCCTTCATACCAAAGAGGCGTTACAATGTCTACTG
CATTCAATTATATTCCTACGTGCACCAAATATAGTGCGGCCACGCGAGGT
AGTGTTGACGTGGTGGGAGAATCTAAGTTACGAAGGCGGGGCAAGGGGGG
AGAGTGCGCGTATCGTGTATTGCCAGGCGTGGAGAAGCGCGCCTGCCTGC
TCCATATGATGATTCGCGCCGGCAACTTTTGGAACTAAGTACAGGCAACG
CAGGGATGAAATGGCTTATAAATATTCGACCAATCGATCACCTTAATTGA
ACCTTTCGGGATGCAGTTGATATGAGTTTTGCGTCTACCCTTTGACATGC
ACCACGTGTGACGTTGTAACGACTCTTTTCGACCCTATTCCAGGTACACT
GCCGGCACCTTCGACTGTCCTACCCTAAGGTGGAGCGTCCTACCTCCTCC
TCCTCCTCGTCGTCCCCCTTCTCCGTTGCACGCATCGATGAGGTTGTGGA
CAGCGCCCTTGACGCATGCCTTCGAAATTTGACCCCGGCAGGGCCCAATT
TGAGCAGAGGTGCGGACATGGAAAAATAGCCTGTTAGGGTTAAAAAAATA
GCCGTGCCGTACGCGATGTAGATGTTTTTCGTGGTCTCTTTCTCAGAGAA
GCTCACTGACATTTGTTCGGGGGTTTTCTCCCTCTGACAGGCCACCTTGT
CCTCACCTTTTACGAGCGTCGCCAGACCCTTTCTTTCTTCCGGCTGATCC
AGAACGAAGAGCGGGTCGTCTTTGAAGAGTGGATCATACCTTTCCTCGTG
GACAGCATGGGTAAGTGTGGAGATGGGTAGGGTCTCGGAACGTATCTCGA
GGTCTGGCGTCATGCTACTCGCATCTCTTCCTATCGGCCGTTCCCTTTCA
CGCTCAACAAGACGACTCGACGCCCGAAGACACTTGTACCCTCTCAATCC
TTACGTCATGCTCTTGTCGTGGATCAAATCTCTCATCTTCTCAGGATCCA
CCAGCACCCTCGCCTCCTCCCTCTCCGCCTCGGACGACGGCTTTGTGGGC
GTCCATGACGGCGAGCTTTACACCGAGCCTTCCTCCCACAGCTCCATGTC
TACGCTCCCTCCCGCATCCCTGTATGGCGGGGGAGGGGAGGATCCCGCAA
TAGGTAAGATAATCTGATTCTTCGTGTCACTCCCCTCTGTGGGGCGGGAA
GGCACGAATTTCTGTTGACCATACCTCTCCTGGGGCTTTTCTATGTCCCT
CTCTGCACCTCTTTCTTACTCTCTCCCTCCTGACCTCCCTTCTCTTCCAC
ACCTGGCCTGCCAGCGGTCGAACAGCAGCGGGCCCAAGCGCGCACGGAGG
CCCTTCTCCGCTCTCGCCTGCAGGATATATACACCCTCGTGAATGGAAGC
ATCGATCACATCCCTCCAGTCAGTTATTTGTTTCAGGTTTGAAGGAGGGG
GGGGAAGCGGTAAAAAAAAGGGTGGCCTTCAGCGGCAAATGGAATGGAAG
TGTACTCTGAACCAGAACTGAAGTGAAAAGAAATGAGCAGTGCTGCTTTT
TTCCAAAAGTTTCAACTACTTGAAAATGTGGGCTTGCTTCGTGATACAAT
TGCATGGGTATATCTTTGGATTTTGTGCAAATGTTAGTACTGTACTACCT
TGTGATGGCGTCGATCGTTTGTTTCAGTACCCGTCCTTATGTCCACTGTC
TGAACGCTGATGACCCTCTTCCTAACCTTGATCCAGATCTCTCACGGCGC
AGCGTCTAGGGATCGAGCGCAAGACTTGGCGACCAAAATCAGAAATAGCC
CCGCTCTTATCAACAACAGCTTGTGAATATGCACAGCATCGGCGCGGTCG
TGGATGTACAATACAAAGGGCAACCACTTTAGCGCTGGGATCATGTAGAC
AGGCTGTAAAGAATAACTTATGCACATGGTTGCTTACCCTTTCCAAACAT
TTGATTTGATCGGTCGCTCGCTTGATGTGTCCTCGGTGCTACGTCTAGGA
GGCAGCGCAACACTTGCTCCCTTCCTGGGACGGTCTAATCATAGACAGAT
GTGATGCCTTCCATCCTCGTTGTGAGCCTATCAAGTATTTTACATCCCAA
ACCAGACCCAAAGGAACGTTCAAATATACACCTCTGTTTCGAAAAAT back to topCoding sequence (CDS) from alignment at CM002464.1:33548..35944- >rna4675 ID=rna4675|Name=rna4675|organism=Nannochloropsis gaditana|type=CDS|length=4698bp|location=Sequence derived from alignment at CM002464.1:33548..35944- (Nannochloropsis gaditana)
ATCTCTCACGGCGCAGCGTCTAGGGATCGAGCGCAAGACTTGGCGACCAA
AATCAGAAATAGCCCCGCTCTTATCAACAACAGCTTGTGACGGTCGAACA
GCAGCGGGCCCAAGCGCGCACGGAGGCCCTTCTCCGCTCTCGCCTGCAGG
ATATATACACCCTCGTGAATGGAAGCATCGATCACATCCCTCCAGTCAGT
TATTTGTTTCAGGATCCACCAGCACCCTCGCCTCCTCCCTCTCCGCCTCG
GACGACGGCTTTGTGGGCGTCCATGACGGCGAGCTTTACACCGAGCCTTC
CTCCCACAGCTCCATGTCTACGCTCCCTCCCGCATCCCTGTATGGCGGGG
GAGGGGAGGATCCCGCAATAGGCCACCTTGTCCTCACCTTTTACGAGCGT
CGCCAGACCCTTTCTTTCTTCCGGCTGATCCAGAACGAAGAGCGGGTCGT
CTTTGAAGAGTGGATCATACCTTTCCTCGTGGACAGCATGGGTACACTGC
CGGCACCTTCGACTGTCCTACCCTAAGGTGGAGCGTCCTACCTCCTCCTC
CTCCTCGTCGTCCCCCTTCTCCGTTGCACGCATCGATGAGGTTGTGGACA
GCGCCCTTGACGCATGCCTTCGAAATTTGACCCCGGCAGGGCCCAATTTG
AGCAGAGATGAACCACAAGGAGCATGTGTTGGGGGAGCTAGAACTTCGCC
CCCTTCATACCAAAGAGGCGTTACAATGTCTACTGCATTCAATTATATTC
CTACGTGCACCAAATATAGTGCGGCCACGCGAGATCTCTCACGGCGCAGC
GTCTAGGGATCGAGCGCAAGACTTGGCGACCAAAATCAGAAATAGCCCCG
CTCTTATCAACAACAGCTTGTGACGGTCGAACAGCAGCGGGCCCAAGCGC
GCACGGAGGCCCTTCTCCGCTCTCGCCTGCAGGATATATACACCCTCGTG
AATGGAAGCATCGATCACATCCCTCCAGTCAGTTATTTGTTTCAGGATCC
ACCAGCACCCTCGCCTCCTCCCTCTCCGCCTCGGACGACGGCTTTGTGGG
CGTCCATGACGGCGAGCTTTACACCGAGCCTTCCTCCCACAGCTCCATGT
CTACGCTCCCTCCCGCATCCCTGTATGGCGGGGGAGGGGAGGATCCCGCA
ATAGGCCACCTTGTCCTCACCTTTTACGAGCGTCGCCAGACCCTTTCTTT
CTTCCGGCTGATCCAGAACGAAGAGCGGGTCGTCTTTGAAGAGTGGATCA
TACCTTTCCTCGTGGACAGCATGGGTACACTGCCGGCACCTTCGACTGTC
CTACCCTAAGGTGGAGCGTCCTACCTCCTCCTCCTCCTCGTCGTCCCCCT
TCTCCGTTGCACGCATCGATGAGGTTGTGGACAGCGCCCTTGACGCATGC
CTTCGAAATTTGACCCCGGCAGGGCCCAATTTGAGCAGAGATGAACCACA
AGGAGCATGTGTTGGGGGAGCTAGAACTTCGCCCCCTTCATACCAAAGAG
GCGTTACAATGTCTACTGCATTCAATTATATTCCTACGTGCACCAAATAT
AGTGCGGCCACGCGAGATCTCTCACGGCGCAGCGTCTAGGGATCGAGCGC
AAGACTTGGCGACCAAAATCAGAAATAGCCCCGCTCTTATCAACAACAGC
TTGTGACGGTCGAACAGCAGCGGGCCCAAGCGCGCACGGAGGCCCTTCTC
CGCTCTCGCCTGCAGGATATATACACCCTCGTGAATGGAAGCATCGATCA
CATCCCTCCAGTCAGTTATTTGTTTCAGGATCCACCAGCACCCTCGCCTC
CTCCCTCTCCGCCTCGGACGACGGCTTTGTGGGCGTCCATGACGGCGAGC
TTTACACCGAGCCTTCCTCCCACAGCTCCATGTCTACGCTCCCTCCCGCA
TCCCTGTATGGCGGGGGAGGGGAGGATCCCGCAATAGGCCACCTTGTCCT
CACCTTTTACGAGCGTCGCCAGACCCTTTCTTTCTTCCGGCTGATCCAGA
ACGAAGAGCGGGTCGTCTTTGAAGAGTGGATCATACCTTTCCTCGTGGAC
AGCATGGGTACACTGCCGGCACCTTCGACTGTCCTACCCTAAGGTGGAGC
GTCCTACCTCCTCCTCCTCCTCGTCGTCCCCCTTCTCCGTTGCACGCATC
GATGAGGTTGTGGACAGCGCCCTTGACGCATGCCTTCGAAATTTGACCCC
GGCAGGGCCCAATTTGAGCAGAGATGAACCACAAGGAGCATGTGTTGGGG
GAGCTAGAACTTCGCCCCCTTCATACCAAAGAGGCGTTACAATGTCTACT
GCATTCAATTATATTCCTACGTGCACCAAATATAGTGCGGCCACGCGAGA
TCTCTCACGGCGCAGCGTCTAGGGATCGAGCGCAAGACTTGGCGACCAAA
ATCAGAAATAGCCCCGCTCTTATCAACAACAGCTTGTGACGGTCGAACAG
CAGCGGGCCCAAGCGCGCACGGAGGCCCTTCTCCGCTCTCGCCTGCAGGA
TATATACACCCTCGTGAATGGAAGCATCGATCACATCCCTCCAGTCAGTT
ATTTGTTTCAGGATCCACCAGCACCCTCGCCTCCTCCCTCTCCGCCTCGG
ACGACGGCTTTGTGGGCGTCCATGACGGCGAGCTTTACACCGAGCCTTCC
TCCCACAGCTCCATGTCTACGCTCCCTCCCGCATCCCTGTATGGCGGGGG
AGGGGAGGATCCCGCAATAGGCCACCTTGTCCTCACCTTTTACGAGCGTC
GCCAGACCCTTTCTTTCTTCCGGCTGATCCAGAACGAAGAGCGGGTCGTC
TTTGAAGAGTGGATCATACCTTTCCTCGTGGACAGCATGGGTACACTGCC
GGCACCTTCGACTGTCCTACCCTAAGGTGGAGCGTCCTACCTCCTCCTCC
TCCTCGTCGTCCCCCTTCTCCGTTGCACGCATCGATGAGGTTGTGGACAG
CGCCCTTGACGCATGCCTTCGAAATTTGACCCCGGCAGGGCCCAATTTGA
GCAGAGATGAACCACAAGGAGCATGTGTTGGGGGAGCTAGAACTTCGCCC
CCTTCATACCAAAGAGGCGTTACAATGTCTACTGCATTCAATTATATTCC
TACGTGCACCAAATATAGTGCGGCCACGCGAGATCTCTCACGGCGCAGCG
TCTAGGGATCGAGCGCAAGACTTGGCGACCAAAATCAGAAATAGCCCCGC
TCTTATCAACAACAGCTTGTGACGGTCGAACAGCAGCGGGCCCAAGCGCG
CACGGAGGCCCTTCTCCGCTCTCGCCTGCAGGATATATACACCCTCGTGA
ATGGAAGCATCGATCACATCCCTCCAGTCAGTTATTTGTTTCAGGATCCA
CCAGCACCCTCGCCTCCTCCCTCTCCGCCTCGGACGACGGCTTTGTGGGC
GTCCATGACGGCGAGCTTTACACCGAGCCTTCCTCCCACAGCTCCATGTC
TACGCTCCCTCCCGCATCCCTGTATGGCGGGGGAGGGGAGGATCCCGCAA
TAGGCCACCTTGTCCTCACCTTTTACGAGCGTCGCCAGACCCTTTCTTTC
TTCCGGCTGATCCAGAACGAAGAGCGGGTCGTCTTTGAAGAGTGGATCAT
ACCTTTCCTCGTGGACAGCATGGGTACACTGCCGGCACCTTCGACTGTCC
TACCCTAAGGTGGAGCGTCCTACCTCCTCCTCCTCCTCGTCGTCCCCCTT
CTCCGTTGCACGCATCGATGAGGTTGTGGACAGCGCCCTTGACGCATGCC
TTCGAAATTTGACCCCGGCAGGGCCCAATTTGAGCAGAGATGAACCACAA
GGAGCATGTGTTGGGGGAGCTAGAACTTCGCCCCCTTCATACCAAAGAGG
CGTTACAATGTCTACTGCATTCAATTATATTCCTACGTGCACCAAATATA
GTGCGGCCACGCGAGATCTCTCACGGCGCAGCGTCTAGGGATCGAGCGCA
AGACTTGGCGACCAAAATCAGAAATAGCCCCGCTCTTATCAACAACAGCT
TGTGACGGTCGAACAGCAGCGGGCCCAAGCGCGCACGGAGGCCCTTCTCC
GCTCTCGCCTGCAGGATATATACACCCTCGTGAATGGAAGCATCGATCAC
ATCCCTCCAGTCAGTTATTTGTTTCAGGATCCACCAGCACCCTCGCCTCC
TCCCTCTCCGCCTCGGACGACGGCTTTGTGGGCGTCCATGACGGCGAGCT
TTACACCGAGCCTTCCTCCCACAGCTCCATGTCTACGCTCCCTCCCGCAT
CCCTGTATGGCGGGGGAGGGGAGGATCCCGCAATAGGCCACCTTGTCCTC
ACCTTTTACGAGCGTCGCCAGACCCTTTCTTTCTTCCGGCTGATCCAGAA
CGAAGAGCGGGTCGTCTTTGAAGAGTGGATCATACCTTTCCTCGTGGACA
GCATGGGTACACTGCCGGCACCTTCGACTGTCCTACCCTAAGGTGGAGCG
TCCTACCTCCTCCTCCTCCTCGTCGTCCCCCTTCTCCGTTGCACGCATCG
ATGAGGTTGTGGACAGCGCCCTTGACGCATGCCTTCGAAATTTGACCCCG
GCAGGGCCCAATTTGAGCAGAGATGAACCACAAGGAGCATGTGTTGGGGG
AGCTAGAACTTCGCCCCCTTCATACCAAAGAGGCGTTACAATGTCTACTG
CATTCAATTATATTCCTACGTGCACCAAATATAGTGCGGCCACGCGAG back to top
|