|
|
Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100150g5.10694.mrna |
| Orig protein id | gnl|cribi|Naga_100150g5.10694 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002464.1 | supercontig | CM002464.1:14433..15426 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4668 ID=rna4668|Name=rna4668|organism=Nannochloropsis gaditana|type=mRNA|length=597bp
ATGTGCGGCGGATTCTTCTCGTTGTCGTGCGGCGCCCTGTCCTTGAAGGT
TGTCACGACGCTCTTATGGGCTATATGTCGCTTCCATGCGTGTGACAGGG
GAAGCAACCAACTAGAGCTGTCGGACACAGCAACAATAGAAAGGAGCGGC
AGAAGAAATGCTCGATGCTATTTCATATCTCGTCTGGGGGTTAATATACA
TCATAGCAGGATTCGGGATTCTTGCCGTGGGGTCAATAATTCTTGTCATG
GTCCGGGCTTGTATCTCTTCCGGGAAGCTTCTATTTCTCGGACCCCCCCT
GCGTTTCGGGAAAATGGAGGCGGCCAAAACCACCGAAAGGGCCTGGTGCG
GCTTTCTCACGAGGCGAATGGGCGGGCGAGGGCAGGAGAGGGCTCGAATC
GTGTGCGTAAAGGGAAATTTTTACGAAAAATTAGGGATACACATAGAAAT
GTACAGCTAAAAATGCAACAGGGTGTGATTATTGACGACCAAGCTTGTAG
CGAGCATGTAAGAGGCGAACGGGAGTGGAGAGTGTCAGTAGGGTCGGGAC
TAAGAGCAGAGGGAGGTCATATATGGGACAAATGCCCCGAAAAGTAA back to topprotein sequence of rna4668 >rna4668-protein ID=rna4668-protein|Name=rna4668|organism=Nannochloropsis gaditana|type=polypeptide|length=194bp
MQQIMPRRTAFIGTSVPKPVAVMKRGRNSKGIASLIGKYPGALAMGLLSL
AFCWIVSFWRPLSSEQFARQWFENGGFLPQCNQALTFAKAASELRCYAKN
ILADGSVNRGLFGFNSKNSSHISDACAYDCACSFRALSSLANNRQDRKTL
SRYMNSTGINLGSVIGDAGPPCNAVAEALILEGWSMLQIQGAWE back to topmRNA from alignment at CM002464.1:14433..15426+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4668 ID=rna4668|Name=rna4668|organism=Nannochloropsis gaditana|type=mRNA|length=994bp|location=Sequence derived from alignment at CM002464.1:14433..15426+ (Nannochloropsis gaditana)
GACCGTCGCCAAAAACCTCAACATAGACGAAAGGCAAAAGCTCACACCTG
CCGACTCTGCACGTATGCAGCAGATCATGCCACGCCGGACAGCATTCATA
GGTACAAGCGTCCCAAAGCCAGTCGCCGTGatgaaaagggggagaaatAG
CAAGGGCATCGCCTCTCTTATAGGCAAGTACCCCGGCGCTCTGGCGATgg
gccttctttcccttgctTTTTGTTGGATTGTTTCCTTCTGGCGGCCGCTG
AGCTCCGAGCAATTTGCCAGACAATGGTGAGTTGGCGTCAATCAGGAGGG
CTGATATGTGAAATGAAATGGAAACTGTACTCACAGCCCAAGCACATATA
ACTTCTTTTTTGTTTTCTTCGCAACCCTTCCACAATTTTAATATCGTCAG
GTTTGAGAACGGTGGTTTTTTGCCTCAGTGCAACCAGGCTTTAACATTTG
CCAAAGCTGCCTCAGAACTCCGGTGTTATGCAAAGAACATTTTGGCGGAT
GGAAGTGTGAATCGAGGTGAGGGCAATTACTATGAAAGGACATAATTTGT
ACGGGAAAGAGATGTaactttttttttctccaaaCAGGGCTGTTCGGATT
TAATAGTAAAAATTCTAGCCACATAAGTGACGCATGTGCATGTAAGTTTG
TGTATCCACGCatggctttctccctcctctcaatGACTTCTCATCTCTCC
TTActgtcttcccccttcctgtcttgCAGATGATTGCGCTTGTTCGTTTC
GCGCTCTCTCCTCGCTGGCGAATAACAGACAGGATCGAAAGACATTGTCT
CGCTATATGAATAGCACGGGCATTAATCTAGGGAGCGTTATCGGAGATGC
GGGTCCACCTTGTAATGCCGTGGCCGAGGCTCTGATCCTAGAAGGCTGGA
GCATGCTGCAAATCCAAGGGGCGTGGGAATAGTAATTCCTCATCATAACA
ACAAATGTGCAGGACgacaggagaaagaaagactACAGATTTGA back to topCoding sequence (CDS) from alignment at CM002464.1:14433..15426+ >rna4668 ID=rna4668|Name=rna4668|organism=Nannochloropsis gaditana|type=CDS|length=2340bp|location=Sequence derived from alignment at CM002464.1:14433..15426+ (Nannochloropsis gaditana)
ATGCAGCAGATCATGCCACGCCGGACAGCATTCATAGGTACAAGCGTCCC
AAAGCCAGTCGCCGTGatgaaaagggggagaaatAGCAAGGGCATCGCCT
CTCTTATAGGCAAGTACCCCGGCGCTCTGGCGATgggccttctttccctt
gctTTTTGTTGGATTGTTTCCTTCTGGCGGCCGCTGAGCTCCGAGCAATT
TGCCAGACAATGGTTTGAGAACGGTGGTTTTTTGCCTCAGTGCAACCAGG
CTTTAACATTTGCCAAAGCTGCCTCAGAACTCCGGTGTTATGCAAAGAAC
ATTTTGGCGGATGGAAGTGTGAATCGAGGGCTGTTCGGATTTAATAGTAA
AAATTCTAGCCACATAAGTGACGCATGTGCATATGATTGCGCTTGTTCGT
TTCGCGCTCTCTCCTCGCTGGCGAATAACAGACAGGATCGAAAGACATTG
TCTCGCTATATGAATAGCACGGGCATTAATCTAGGGAGCGTTATCGGAGA
TGCGGGTCCACCTTGTAATGCCGTGGCCGAGGCTCTGATCCTAGAAGGCT
GGAGCATGCTGCAAATCCAAGGGGCGTGGGAATAGATGCAGCAGATCATG
CCACGCCGGACAGCATTCATAGGTACAAGCGTCCCAAAGCCAGTCGCCGT
GatgaaaagggggagaaatAGCAAGGGCATCGCCTCTCTTATAGGCAAGT
ACCCCGGCGCTCTGGCGATgggccttctttcccttgctTTTTGTTGGATT
GTTTCCTTCTGGCGGCCGCTGAGCTCCGAGCAATTTGCCAGACAATGGTT
TGAGAACGGTGGTTTTTTGCCTCAGTGCAACCAGGCTTTAACATTTGCCA
AAGCTGCCTCAGAACTCCGGTGTTATGCAAAGAACATTTTGGCGGATGGA
AGTGTGAATCGAGGGCTGTTCGGATTTAATAGTAAAAATTCTAGCCACAT
AAGTGACGCATGTGCATATGATTGCGCTTGTTCGTTTCGCGCTCTCTCCT
CGCTGGCGAATAACAGACAGGATCGAAAGACATTGTCTCGCTATATGAAT
AGCACGGGCATTAATCTAGGGAGCGTTATCGGAGATGCGGGTCCACCTTG
TAATGCCGTGGCCGAGGCTCTGATCCTAGAAGGCTGGAGCATGCTGCAAA
TCCAAGGGGCGTGGGAATAGATGCAGCAGATCATGCCACGCCGGACAGCA
TTCATAGGTACAAGCGTCCCAAAGCCAGTCGCCGTGatgaaaagggggag
aaatAGCAAGGGCATCGCCTCTCTTATAGGCAAGTACCCCGGCGCTCTGG
CGATgggccttctttcccttgctTTTTGTTGGATTGTTTCCTTCTGGCGG
CCGCTGAGCTCCGAGCAATTTGCCAGACAATGGTTTGAGAACGGTGGTTT
TTTGCCTCAGTGCAACCAGGCTTTAACATTTGCCAAAGCTGCCTCAGAAC
TCCGGTGTTATGCAAAGAACATTTTGGCGGATGGAAGTGTGAATCGAGGG
CTGTTCGGATTTAATAGTAAAAATTCTAGCCACATAAGTGACGCATGTGC
ATATGATTGCGCTTGTTCGTTTCGCGCTCTCTCCTCGCTGGCGAATAACA
GACAGGATCGAAAGACATTGTCTCGCTATATGAATAGCACGGGCATTAAT
CTAGGGAGCGTTATCGGAGATGCGGGTCCACCTTGTAATGCCGTGGCCGA
GGCTCTGATCCTAGAAGGCTGGAGCATGCTGCAAATCCAAGGGGCGTGGG
AATAGATGCAGCAGATCATGCCACGCCGGACAGCATTCATAGGTACAAGC
GTCCCAAAGCCAGTCGCCGTGatgaaaagggggagaaatAGCAAGGGCAT
CGCCTCTCTTATAGGCAAGTACCCCGGCGCTCTGGCGATgggccttcttt
cccttgctTTTTGTTGGATTGTTTCCTTCTGGCGGCCGCTGAGCTCCGAG
CAATTTGCCAGACAATGGTTTGAGAACGGTGGTTTTTTGCCTCAGTGCAA
CCAGGCTTTAACATTTGCCAAAGCTGCCTCAGAACTCCGGTGTTATGCAA
AGAACATTTTGGCGGATGGAAGTGTGAATCGAGGGCTGTTCGGATTTAAT
AGTAAAAATTCTAGCCACATAAGTGACGCATGTGCATATGATTGCGCTTG
TTCGTTTCGCGCTCTCTCCTCGCTGGCGAATAACAGACAGGATCGAAAGA
CATTGTCTCGCTATATGAATAGCACGGGCATTAATCTAGGGAGCGTTATC
GGAGATGCGGGTCCACCTTGTAATGCCGTGGCCGAGGCTCTGATCCTAGA
AGGCTGGAGCATGCTGCAAATCCAAGGGGCGTGGGAATAG back to top
|