rna4652, rna4652 (mRNA) Nannochloropsis gaditana

Overview
Namerna4652
Unique Namerna4652
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length330
Alignment locationCM002463.1:1153475..1153862 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_103849g1.3109.mrna
Orig protein idgnl|cribi|Naga_103849g1.3109
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:1153475..1153862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_103849g1gene4489Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26033.1cds4640Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4652rna4652-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4652 ID=rna4652|Name=rna4652|organism=Nannochloropsis gaditana|type=mRNA|length=330bp
ATGCTCTGGAAGAGAGCAGTCGAGGAAGCCCTCTCTTCATTCGCTACCCT
CCCTTCCTTCCTTTCCTCCTCCCTCCCCCACCTCTTCCCCCCTTTGCCCT
CTCCACAGGCTGTCCTCGAGCATCAAACGCTTCCCCTCGCCCTCTCCCTC
CCCCTCCTTAAGCACATTCTCGGCACTCCCCTCACCTTCTCGGACCTGGA
GCTGCTCGACCCCGACCTCTACCGTTCCCTTGCCTACATCCAGCGTTGCT
CGCCCGAGGAGGTGGAGGCTCTCCACCTCGACTTTACCGTCACCTTCGAG
GCTGTGGGCCGTCAAGAGGTAGGTCCGTGA
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protein sequence of rna4652

>rna4652-protein ID=rna4652-protein|Name=rna4652|organism=Nannochloropsis gaditana|type=polypeptide|length=125bp
LPPSLPPSLPSDSFLPSFLNSLSCLRGRRLDEEREGREGVSSLYTPLLGL
LPSLRPARPPSPSSDLSEEERARQARAEVFRNSLMEEGGREGGREGGREG
GREGGRPGGKGEAEWICVVCAFENR
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mRNA from alignment at CM002463.1:1153475..1153862-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4652 ID=rna4652|Name=rna4652|organism=Nannochloropsis gaditana|type=mRNA|length=388bp|location=Sequence derived from alignment at CM002463.1:1153475..1153862- (Nannochloropsis gaditana)
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCTGACTCCTTCCTTCCCTC
CTTTCTGAACTCCCTCAGTTGTTTACGCGGCCGACGCCTGGATGAGGAAA
GGGAAGGGAGGGAGGGCGTCTCCTCCCTCTACACCCCTCTCCTAGGTCTC
CTCCCCTCCCTCCGCCCCGCCCGCCCTCCCTCCCCCTCCTCCGACCTGAG
TGAGGAGGAACGGGCGCGGCAGGCGCGGGCAGAGGTCTTTCGGAACAGCC
TGATGGAGGAGGGGGGGCGGGAAGGAGGGCGGGAAGGAGGGCGGGAGGGA
GGGCGGGAGGGAGGGCGCCCCGGGGGTAAAGGGGAAGCGGAATGGATATG
TGTGGTTTGTGCATTCGAGAACCGGTGAGGGAGGAGGG
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Coding sequence (CDS) from alignment at CM002463.1:1153475..1153862-

>rna4652 ID=rna4652|Name=rna4652|organism=Nannochloropsis gaditana|type=CDS|length=378bp|location=Sequence derived from alignment at CM002463.1:1153475..1153862- (Nannochloropsis gaditana)
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCTGACTCCTTCCTTCCCTC
CTTTCTGAACTCCCTCAGTTGTTTACGCGGCCGACGCCTGGATGAGGAAA
GGGAAGGGAGGGAGGGCGTCTCCTCCCTCTACACCCCTCTCCTAGGTCTC
CTCCCCTCCCTCCGCCCCGCCCGCCCTCCCTCCCCCTCCTCCGACCTGAG
TGAGGAGGAACGGGCGCGGCAGGCGCGGGCAGAGGTCTTTCGGAACAGCC
TGATGGAGGAGGGGGGGCGGGAAGGAGGGCGGGAAGGAGGGCGGGAGGGA
GGGCGGGAGGGAGGGCGCCCCGGGGGTAAAGGGGAAGCGGAATGGATATG
TGTGGTTTGTGCATTCGAGAACCGGTGA
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Synonyms
Publications