rna4646, rna4646 (mRNA) Nannochloropsis gaditana

Overview
Namerna4646
Unique Namerna4646
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length334
Alignment locationCM002463.1:1135542..1136570 +

Link to JBrowse

Properties
Property NameValue
Productsplicing factor prp8
Orig transcript idgnl|cribi|Naga_102178g1.10365.mrna
Orig protein idgnl|cribi|Naga_102178g1.10365
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:1135542..1136570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102178g1gene4483Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4646rna4646-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26039.1cds4634Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4646 ID=rna4646|Name=rna4646|organism=Nannochloropsis gaditana|type=mRNA|length=334bp
TCAGGGGATCAACAACCTGCAAGACATCTGGGATACCAGCCAAGGGGAGT
GCGTCGTCATGCTCGAGACGCAGTTGGAGAATATCTACGAGAAAATAGAT
CTCACCCTGCTGAACCGCCTCTTGCGCCTGGTGGTGGAGCACTCGCTCGC
CGACTACATGACGAACAAGAACAACGTCGTCATCGCCTACAAGGATATGC
AACATACCAACTCCTACGGCATCCTTCGCGGCTTGCAATTCGCCTCCTTC
CTCGTCCAGTACTACGGCCTCATCTTGGACCTCCTGGTGCTGGGATTGAA
GAGGGCGAGCGAGATGGCGGGCCTCCGCAGGTAG
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protein sequence of rna4646

>rna4646-protein ID=rna4646-protein|Name=rna4646|organism=Nannochloropsis gaditana|type=polypeptide|length=136bp
MTAKPPTLLAATSLPFFLPPSFPPLTFSFPPFIFHFLGSNQIIWFVDDTN
VYRVTIHKTFEGNLTTKPINGAIFIFNPRSGQLFLKIIHTSVWAGQKRLS
QLAKWKTAEEVAALIRSLHVTEQPNQVGLSLALPPS
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mRNA from alignment at CM002463.1:1135542..1136570+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4646 ID=rna4646|Name=rna4646|organism=Nannochloropsis gaditana|type=mRNA|length=1029bp|location=Sequence derived from alignment at CM002463.1:1135542..1136570+ (Nannochloropsis gaditana)
CGTCGCTGGCTGTGCTTCGGTTTTCGATTGCTTCTTCTACGGGTGGGCGT
GTTTCTGGGtactcttctttccttttcaagtccttttctttccatgtCTG
TATGCATCTGTCTCTGTACTTGATTGCCAATGACAGCAAAACCACCTACC
CTCTTGGcggccacctccctcccgttcttcctgcctccctccttcccccc
tctcacattctcttttcctccttttattttccatttcctggGCAGCAATC
AAATTATCTGGTTCGTGGACGACACCAACGTGTACCGCGTCACGATCCAC
AAGACCTttgaaggtgggaaggagggagggagggagggagggaaaggcac
gAAATTTCCGTGGCTGCACTTCACAAGTACCAATTGGGATGCTCTTAGTA
CCTCCAGGATCCTTTATGCTTTGCGTTAACTTTCTCTCCTCTGACGGAAT
TTTGCTCACCTTCACTCCAGCTCAGCTCTAAGCTTTTTCatctcaccttc
cttcctcctccttcccaccctcctttcctcccttctttgtgCAGGCAACC
TCACGACCAAGCCCATCAACGGTGCCATTTTCATCTTCAATCCCCGGTCG
GGCCAGCTCTTCCTCAAGATCATTCATACCTCGGTGTGGGCGGGACAAAA
GCGTCTTTCCCAGGTCCGTAACCCTACTTCAAACCCTAAAAacaacccta
accctaaccctataccctgcctctcccttccttctcctctcgcTTGACAC
GAGTTCTTTGTATCGATCCTCCCACCTATGCGCTAACTCCGCTCTCTGAT
CTGTTCGTGTCCCGCGATTTGACCTTAAGTACTCGTGGCGTATGTTTATG
TATTTATCATAGTAATGTTCTTACATGCTttatctccctctcctctcgct
tctttctttccttgctCATTGCAGCTGGCGAAATGGAAGACTGCGGAAGA
AGTGGCTGCGCTGattcgctccctccacgtcaCTGAACAACCGAACCAGG
TCGGTCtctctcttgccctccctccttcc
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Coding sequence (CDS) from alignment at CM002463.1:1135542..1136570+

>rna4646 ID=rna4646|Name=rna4646|organism=Nannochloropsis gaditana|type=CDS|length=1224bp|location=Sequence derived from alignment at CM002463.1:1135542..1136570+ (Nannochloropsis gaditana)
ATGACAGCAAAACCACCTACCCTCTTGGcggccacctccctcccgttctt
cctgcctccctccttcccccctctcacattctcttttcctccttttattt
tccatttcctggGCAGCAATCAAATTATCTGGTTCGTGGACGACACCAAC
GTGTACCGCGTCACGATCCACAAGACCTttgaagGCAACCTCACGACCAA
GCCCATCAACGGTGCCATTTTCATCTTCAATCCCCGGTCGGGCCAGCTCT
TCCTCAAGATCATTCATACCTCGGTGTGGGCGGGACAAAAGCGTCTTTCC
CAGCTGGCGAAATGGAAGACTGCGGAAGAAGTGGCTGCGCTGattcgctc
cctccacgtcaCTGAACAACCGAACCAGGTCGGTCtctctcttgccctcc
ctccttccATGACAGCAAAACCACCTACCCTCTTGGcggccacctccctc
ccgttcttcctgcctccctccttcccccctctcacattctcttttcctcc
ttttattttccatttcctggGCAGCAATCAAATTATCTGGTTCGTGGACG
ACACCAACGTGTACCGCGTCACGATCCACAAGACCTttgaagGCAACCTC
ACGACCAAGCCCATCAACGGTGCCATTTTCATCTTCAATCCCCGGTCGGG
CCAGCTCTTCCTCAAGATCATTCATACCTCGGTGTGGGCGGGACAAAAGC
GTCTTTCCCAGCTGGCGAAATGGAAGACTGCGGAAGAAGTGGCTGCGCTG
attcgctccctccacgtcaCTGAACAACCGAACCAGGTCGGTCtctctct
tgccctccctccttccATGACAGCAAAACCACCTACCCTCTTGGcggcca
cctccctcccgttcttcctgcctccctccttcccccctctcacattctct
tttcctccttttattttccatttcctggGCAGCAATCAAATTATCTGGTT
CGTGGACGACACCAACGTGTACCGCGTCACGATCCACAAGACCTttgaag
GCAACCTCACGACCAAGCCCATCAACGGTGCCATTTTCATCTTCAATCCC
CGGTCGGGCCAGCTCTTCCTCAAGATCATTCATACCTCGGTGTGGGCGGG
ACAAAAGCGTCTTTCCCAGCTGGCGAAATGGAAGACTGCGGAAGAAGTGG
CTGCGCTGattcgctccctccacgtcaCTGAACAACCGAACCAGGTCGGT
Ctctctcttgccctccctccttcc
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Synonyms
Publications