rna4639, rna4639 (mRNA) Nannochloropsis gaditana

Overview
Namerna4639
Unique Namerna4639
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length271
Alignment locationCM002463.1:1115604..1116149 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101267g1.5210.mrna
Orig protein idgnl|cribi|Naga_101267g1.5210
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:1115604..1116149 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101267g1gene4475Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4639rna4639-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26046.1cds4627Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4639 ID=rna4639|Name=rna4639|organism=Nannochloropsis gaditana|type=mRNA|length=271bp
ATGTGGAGGCAAGTGATTGACGACCCAGCGGCTTATTTAGAGTCCTCAGA
GCCTCCCTCCTTCTTCATTCAGGAGAAGATCCAAGGGAAGCACCTCATAT
TCCCTCCCTCCCACCGTCTCTCTCGCTTGGTTTCGGCGGGAATGAAGGAG
CAGCCGCAGGTTAAGGTGTGGCAGCTGTCGACGGCAGATTACGAGTTGGA
AATCCTCGCACATTATCAGGAGGGAACGTTATCCCTTGGAATACTCATCC
CTCTTCTCCCTCCCATTGCCC
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protein sequence of rna4639

>rna4639-protein ID=rna4639-protein|Name=rna4639|organism=Nannochloropsis gaditana|type=polypeptide|length=103bp
MYVHFTTAFFVVLPFIFLSTLWSHSSLGFPHSTPKLSQSHVAIHYCSGRK
TVPVSADCSPILASRKGFEHPETRGAFLPSQSCNSSFGLTRPPSRLMSRR
VPR
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mRNA from alignment at CM002463.1:1115604..1116149-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4639 ID=rna4639|Name=rna4639|organism=Nannochloropsis gaditana|type=mRNA|length=546bp|location=Sequence derived from alignment at CM002463.1:1115604..1116149- (Nannochloropsis gaditana)
ATGTATGTGCATTTTACGACCGCGTTTTTTGTTGTGCTCCCTTTCATCTT
CCTTTCAACCCTGTGGAGCCACTCTTCTCTGGGTTTCCCACACAGCACCC
CAAAACTCTCTCAATCTCACGTTGCGATCCACTATTGCTCAGGGAGAAAG
ACTGTACCTGTTTCTGCTGACTGTTCGCCTATTCTTGCCTCAAGAAAAGG
TCAGTAAATTCCAAGTCACCAGGGAGGGGAAACAGCAAGTCCTGAGCTCC
GCCATCGCGATGAGATGTCGCAGGGGACGACATCGTCTTGGTGTGAACTA
TGTACACTTTGATATCTACGCGTTGCCTTAAAATACTTGTCCTACCCAAT
CGGTGGACGCGGCCCCAGGGTCATGATACTGATTCATACCGCGCTTTTTC
TTTCGCCCCGGTCCCTTTCCTTCCCTGCCACAGGCTTTGAGCATCCAGAA
ACCCGTGGTGCTTTCCTTCCTAGCCAATCATGCAACTCTTCATTCGGTCT
AACAAGGCCACCTTCACGCTTAATGTCGCGCAGGGTGCCACGGTAG
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Coding sequence (CDS) from alignment at CM002463.1:1115604..1116149-

>rna4639 ID=rna4639|Name=rna4639|organism=Nannochloropsis gaditana|type=CDS|length=624bp|location=Sequence derived from alignment at CM002463.1:1115604..1116149- (Nannochloropsis gaditana)
GCTTTGAGCATCCAGAAACCCGTGGTGCTTTCCTTCCTAGCCAATCATGC
AACTCTTCATTCGGTCTAACAAGGCCACCTTCACGCTTAATGTCGCGCAG
GGTGCCACGGTAGATGTATGTGCATTTTACGACCGCGTTTTTTGTTGTGC
TCCCTTTCATCTTCCTTTCAACCCTGTGGAGCCACTCTTCTCTGGGTTTC
CCACACAGCACCCCAAAACTCTCTCAATCTCACGTTGCGATCCACTATTG
CTCAGGGAGAAAGACTGTACCTGTTTCTGCTGACTGTTCGCCTATTCTTG
CCTCAAGAAAAGGCTTTGAGCATCCAGAAACCCGTGGTGCTTTCCTTCCT
AGCCAATCATGCAACTCTTCATTCGGTCTAACAAGGCCACCTTCACGCTT
AATGTCGCGCAGGGTGCCACGGTAGATGTATGTGCATTTTACGACCGCGT
TTTTTGTTGTGCTCCCTTTCATCTTCCTTTCAACCCTGTGGAGCCACTCT
TCTCTGGGTTTCCCACACAGCACCCCAAAACTCTCTCAATCTCACGTTGC
GATCCACTATTGCTCAGGGAGAAAGACTGTACCTGTTTCTGCTGACTGTT
CGCCTATTCTTGCCTCAAGAAAAG
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Synonyms
Publications