rna4628, rna4628 (mRNA) Nannochloropsis gaditana

Overview
Namerna4628
Unique Namerna4628
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1002
Alignment locationCM002463.1:1098162..1099586 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101766g1.1026.mrna
Orig protein idgnl|cribi|Naga_101766g1.1026
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:1098162..1099586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101766g1gene4464Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4628rna4628-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26057.1cds4616Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4628 ID=rna4628|Name=rna4628|organism=Nannochloropsis gaditana|type=mRNA|length=1002bp
GTGGCGGAGTAGCTGCCTGCTCCGGTGGGGAAAAAAAAAAGAGCACATGC
CACCCACTATGTCCAAACTAATCCCTCTCCCTTCGCTTGTTCGCCCTCCA
TACTGCGTCGTATCGTGTTGTTCGGACCTTTCAAGCCAGTTTTTGTGGGC
AATGAGTCAGTTTTCGGGGTTCACTTTGCGTAAAGAGGGATATATACGTA
GTACGTAGTTTGCTTTTTCCTTGCCCTTCGTATGTCTCTTTATCTTGGCT
ATATAATAATCACAAAAACCAATAACAATGCCGCTGGTATCAAATAAATC
ATACTAAAAACCAAGCATGGCACATGGACCGCGGATGAAGTCGGAAGATG
GCACATTTTTGCTCCTTTGTCCCTCAGTTTTTGCATTTGTCGATTGTCTC
GAACATTATCAAGACGCCAAGAGAGTCTTTGTCAGAGCGTCTCAACATCT
CTCCCTCGGGGCAAATGTGGAGGCATGAACATGCATAAGCGTACAACAGA
GATCCAAACGCACGCGTACATGATTTTGGGGTACCGACGGATCTGTGTCA
TCGAGTTTCAGAGTATCGAAGGGGGAGGATAGGGTCTGCTCGCCGCGTCG
ACCTTCCTCTCCACAATATTTATGTCGCATGCATGGATTTCACCGGAGGA
AACTCCCGCTTGCCATCTCCCACGCCTTCTTTACACATGATCCAACCTCT
CAGGTCATGCGCACCGCCCAACGCACTGCATTTGGTCACGTCTTCGCCTC
TGTCATCGGTATGGCAGCTCTGTTGGCCTCCACCACCCTCCTCGCTTTTC
CCAAATCCGTCACCGCCTTTGCCGTCCCTGCAGGGGCATGGGGAATGCGC
CTCGCCCCGGCTCCCGTCGCGGTCTCAGCGACGTACGTTCGACGCATGGG
GAGCATGGCCATGGTGGCACCGGAAACGGTCGTACAAGACGTCATCAAGA
AGCCCGCTGTCATTTTCAGGTGGGAAGGGAGGGAGGGGGTTGGGAGGGAG
GG
back to top

protein sequence of rna4628

>rna4628-protein ID=rna4628-protein|Name=rna4628|organism=Nannochloropsis gaditana|type=polypeptide|length=146bp
MHHTYTNMDNDPDLYHYVWFLRDHPNFPYALLHRLQIHRLYCYIVWSATT
AGLLLLEPFAMLVVGSATRGTKTRLHKKRHIFWAFMVLHLFLFPAVYFGL
PVYLLWDSDPNKYKVIMTRFGSFIYYLMGSGLLFGLFSQSLEGEAP
back to top

mRNA from alignment at CM002463.1:1098162..1099586-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4628 ID=rna4628|Name=rna4628|organism=Nannochloropsis gaditana|type=mRNA|length=1425bp|location=Sequence derived from alignment at CM002463.1:1098162..1099586- (Nannochloropsis gaditana)
ATGCACCACACCTACACAAACATGGACAACGACCCTGACCTCTATCACTA
CGTGTGGTTCCTCCGAGACCATCCGAATTTTCCCTACGCGCTCCTCCACC
GTTTGCAGGTTAGTCCCTCCTTGGGCGATATTCCACGAAGAGGGTGGCCC
CTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCATATATATATGTCTGCCTCCATCACGTTGCTTCACTC
TCGACTGTCTGTCCCCATCACGTTGCGTCATTCTCGACTGTCTGCCCCCA
TCACGTTGCTTCATTCTCGACTTTCTGCCCCCATCACGTTGCTTCATTCT
TGAGTGTCTGCCCCCATCAAGTTGCCTCATTCTTGAGTGTCTGCCCCCAT
CAAGTTGCCTCATTCTCGACTGTCTGCCCCCATCACGTTACGTCATTCTC
GACTGTCTGCCCCACTTCTCGGACTGTGCACCCAGGCCTCCTCCTCCTTC
CCCCCCTGCTGTACGGTCGATGGCGGCACGAACCCGATCGATGCTGACAT
GGCACGCATGCACACACACACACACACATATATATATATATATATACGTG
CGTGTGTGTATGTATTCTTTTGACGTGATGTCAGCATAATTATCCATCTA
TCTATCCTTATCTACCTATCCATTCATCTATATATCCATACTCACCCCCT
TCCTTGCTGCCTCCCCGCCATGCCCCCCACCAGATCCATCGCCTCTACTG
CTACATCGTCTGGAGCGCGACCACGGCCGGCCTTCTCCTTCTAGAACCTT
TCGCCATGCTCGTCGTGGGCTCCGCCACCCGCGGGACCAAGACACGTCTG
CACAAGAAACGGCACATTTTTTGGGCCTTTATGGTGCTGCATTTGTTTTT
GTTCCCGGCTGTCTACTTTGGGTTACCTGTCTACCTGCTCTGGGACTCTG
ACCCCAACAAGTACAAGGTAAGGGAGGGCGGGAGGAAGGGAGGGAAAGAC
AAAGTCGCTGCAGGTCGGCGATCCAGCAGTCAAGTGCCGTGGAGCTTGCC
CGTCGGCTCCCTCCCTGCCTGCGCGCCCCGAACCTTAAGGTGACTGCCCT
TCAACCCTTATCTTTCGCGCCATTTCCCCCCCCCCTCCGCTGCCCTGCAC
CTAAGGTAATCATGACGCGTTTCGGCTCCTTCATCTACTACTTGATGGGC
TCCGGACTGCTTTTTGGGCTCTTCTCTCAGGTACGCCCCCCCCCGGCCCC
TCGGATACCGTCGGCGTGTTCGGTTAGGGCTCAGGTTCGAATCAGGGTTC
GAATCAGGGTTCGAATCAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGG
GTTAGGGTTAGGGTTAGGGTTGGGTGCCTGCCTCTTCTACGTCGATCCAA
GAGCCTGGAGGGAGAAGCTCCGTGA
back to top

Coding sequence (CDS) from alignment at CM002463.1:1098162..1099586-

>rna4628 ID=rna4628|Name=rna4628|organism=Nannochloropsis gaditana|type=CDS|length=1764bp|location=Sequence derived from alignment at CM002463.1:1098162..1099586- (Nannochloropsis gaditana)
AGCCTGGAGGGAGAAGCTCCGTGAGTAATCATGACGCGTTTCGGCTCCTT
CATCTACTACTTGATGGGCTCCGGACTGCTTTTTGGGCTCTTCTCTCAGA
TCCATCGCCTCTACTGCTACATCGTCTGGAGCGCGACCACGGCCGGCCTT
CTCCTTCTAGAACCTTTCGCCATGCTCGTCGTGGGCTCCGCCACCCGCGG
GACCAAGACACGTCTGCACAAGAAACGGCACATTTTTTGGGCCTTTATGG
TGCTGCATTTGTTTTTGTTCCCGGCTGTCTACTTTGGGTTACCTGTCTAC
CTGCTCTGGGACTCTGACCCCAACAAGTACAAGATGCACCACACCTACAC
AAACATGGACAACGACCCTGACCTCTATCACTACGTGTGGTTCCTCCGAG
ACCATCCGAATTTTCCCTACGCGCTCCTCCACCGTTTGCAGAGCCTGGAG
GGAGAAGCTCCGTGAGTAATCATGACGCGTTTCGGCTCCTTCATCTACTA
CTTGATGGGCTCCGGACTGCTTTTTGGGCTCTTCTCTCAGATCCATCGCC
TCTACTGCTACATCGTCTGGAGCGCGACCACGGCCGGCCTTCTCCTTCTA
GAACCTTTCGCCATGCTCGTCGTGGGCTCCGCCACCCGCGGGACCAAGAC
ACGTCTGCACAAGAAACGGCACATTTTTTGGGCCTTTATGGTGCTGCATT
TGTTTTTGTTCCCGGCTGTCTACTTTGGGTTACCTGTCTACCTGCTCTGG
GACTCTGACCCCAACAAGTACAAGATGCACCACACCTACACAAACATGGA
CAACGACCCTGACCTCTATCACTACGTGTGGTTCCTCCGAGACCATCCGA
ATTTTCCCTACGCGCTCCTCCACCGTTTGCAGAGCCTGGAGGGAGAAGCT
CCGTGAGTAATCATGACGCGTTTCGGCTCCTTCATCTACTACTTGATGGG
CTCCGGACTGCTTTTTGGGCTCTTCTCTCAGATCCATCGCCTCTACTGCT
ACATCGTCTGGAGCGCGACCACGGCCGGCCTTCTCCTTCTAGAACCTTTC
GCCATGCTCGTCGTGGGCTCCGCCACCCGCGGGACCAAGACACGTCTGCA
CAAGAAACGGCACATTTTTTGGGCCTTTATGGTGCTGCATTTGTTTTTGT
TCCCGGCTGTCTACTTTGGGTTACCTGTCTACCTGCTCTGGGACTCTGAC
CCCAACAAGTACAAGATGCACCACACCTACACAAACATGGACAACGACCC
TGACCTCTATCACTACGTGTGGTTCCTCCGAGACCATCCGAATTTTCCCT
ACGCGCTCCTCCACCGTTTGCAGAGCCTGGAGGGAGAAGCTCCGTGAGTA
ATCATGACGCGTTTCGGCTCCTTCATCTACTACTTGATGGGCTCCGGACT
GCTTTTTGGGCTCTTCTCTCAGATCCATCGCCTCTACTGCTACATCGTCT
GGAGCGCGACCACGGCCGGCCTTCTCCTTCTAGAACCTTTCGCCATGCTC
GTCGTGGGCTCCGCCACCCGCGGGACCAAGACACGTCTGCACAAGAAACG
GCACATTTTTTGGGCCTTTATGGTGCTGCATTTGTTTTTGTTCCCGGCTG
TCTACTTTGGGTTACCTGTCTACCTGCTCTGGGACTCTGACCCCAACAAG
TACAAGATGCACCACACCTACACAAACATGGACAACGACCCTGACCTCTA
TCACTACGTGTGGTTCCTCCGAGACCATCCGAATTTTCCCTACGCGCTCC
TCCACCGTTTGCAG
back to top
Synonyms
Publications