rna4622, rna4622 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4622
Unique Name	rna4622
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	243
Alignment location	CM002463.1:1083039..1084391 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101562g1.2188.mrna
Orig protein id	gnl\|cribi\|Naga_101562g1.2188
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:1083039..1084391 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101562g1	gene4458	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4622	rna4622-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26063.1	cds4610	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:1083039..1084391+
coding sequence from alignment at CM002463.1:1083039..1084391+

mRNA sequence

>rna4622 ID=rna4622|Name=rna4622|organism=Nannochloropsis gaditana|type=mRNA|length=243bp
ATGCACTTGAGCCCCACTAGAAAATGGCGCGAACGCACTTTGAAACCCAA
TAAAAATGGCGCGAACGCCCACGCGAGGACTGTGGGGAGGGAATTCTTGC
TTGTTGCTAATTTTGAAAAGATATATCGCAACGCCGTTATTCCGTACAAC
CTCATCAGGGGAGAAAATTTCTCTTCCGCTTTGCATGCCTCCCGGTGTCG
CGCCCCCGCATCCGCGAAGGAAAGCAATCGGGGCTCACCCTAA

protein sequence of rna4622

>rna4622-protein ID=rna4622-protein|Name=rna4622|organism=Nannochloropsis gaditana|type=polypeptide|length=114bp
MRPSPPFPFTTPPTLSTTVTSFRPPIFGKIMRCTTEYGRACIPVHLPWRR
LDKKVSKTKLPISTTMHSSSSALLETPLHSTFFFCQSLLRNSLLKHTGIH
EEKSVLVLCLGAHE

mRNA from alignment at CM002463.1:1083039..1084391+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4622 ID=rna4622|Name=rna4622|organism=Nannochloropsis gaditana|type=mRNA|length=1353bp|location=Sequence derived from alignment at CM002463.1:1083039..1084391+ (Nannochloropsis gaditana)
CCTGAGACCCTAGTAATCCGTTCGATTTCACTGAAAACCTCAAAGCCACC
CACACATATCGACGCACACTCATGCACGTAAGAATTATGTAGAATTACAT
GGGCCGTCCACGCTTCTGACGGGCCATCGCGCGCGTTTCCCTTTATTTAT
TCGCCAATCGtggcccatcgcctcctccctatgcgtccttcccctccctt
cccatttACCACCCCACCTACACTTTCAACCACCGTGACATCGTTTCGCC
CCCCCATCTTTGGCAAAATAATGAGATGTACCACGGAATATGGGCGAGCC
TGCATTCCTGTACATCTTCCCTGGCGTCGATTGGACAAGAAAGTGTCGAA
AACCAAGCTacccatctccaccactATGCACTCGTCGTCTTCAGCATTAT
TGGAAACGCCCTTGCATTCgactttcttcttctgccaATCACTCCTAAGA
AACTCACTTCTGAAACATACAGGAATCCATGAGGAGAAGAGCGTTCTTGT
TCTTTGCTTGGGTGCTCACGAGTAGCCTAGGCTGGGGTCAGACACAGCCT
GCGGAGGACGCCGGCCCGGTGTCCTCCCAGACGCTTCAGGTAAGCAAAGC
GAAGGGACATAGAAACATTCTGGAACAAGAAGAGGCGCACGGCCACGACC
AGGAAACATGTGATGCAAGGAGTCGCGCAGGAAtagggaaggcggggctt
GCACGATCACGCGATagaccctcccttttccttttcgttttcttttcgtg
gaggaggactttgCACGGTCACGCGATAgatttttccattttccttttcg
tgttctttcccttgtgatgcctcctttttccttttctttttttttaactT
GTGCTACCTTCATCTtctgtttcttttcccctccttgtgctgcctccctt
ttctttcccttttttcctcgtgCTGGAATGAGCacgcctttccctctttt
cccgttCACGTGGTTCTTGTCCCGCTGGCCATCCTCGACTACAATTTGAC
ATCAACGTCCCCCTCCATACCGTACACTTCATTCCACAATACAGACGCAG
CAGGAGCAACAGGCGcaattcttccctccccggagacaggaggaggagga
ggaggaagagggaggaagagagggaagaaaggagcaTGGGCGTTCAAATC
CTATCCCtcaaagcagggagggggaaggtgatgaggagggaaggatggag
gaggaggaatctgagaggtagggagggagggagggagggaaggctgcGAA
CACCTCCTTGAATGACGCGGCTCCAGTGTACTCAAgcctgctctcctctt
tttctcatCCTTGAATATTGTCGGCGGCCTTTTGTTTCCCCCCTGCTCGC
TTC

Coding sequence (CDS) from alignment at CM002463.1:1083039..1084391+

>rna4622 ID=rna4622|Name=rna4622|organism=Nannochloropsis gaditana|type=CDS|length=345bp|location=Sequence derived from alignment at CM002463.1:1083039..1084391+ (Nannochloropsis gaditana)
atgcgtccttcccctcccttcccatttACCACCCCACCTACACTTTCAAC
CACCGTGACATCGTTTCGCCCCCCCATCTTTGGCAAAATAATGAGATGTA
CCACGGAATATGGGCGAGCCTGCATTCCTGTACATCTTCCCTGGCGTCGA
TTGGACAAGAAAGTGTCGAAAACCAAGCTacccatctccaccactATGCA
CTCGTCGTCTTCAGCATTATTGGAAACGCCCTTGCATTCgactttcttct
tctgccaATCACTCCTAAGAAACTCACTTCTGAAACATACAGGAATCCAT
GAGGAGAAGAGCGTTCTTGTTCTTTGCTTGGGTGCTCACGAGTAG

Synonyms

Publications