rna4621, rna4621 (mRNA) Nannochloropsis gaditana

Overview
Namerna4621
Unique Namerna4621
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length933
Alignment locationCM002463.1:1081666..1081984 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102749g1.6990.mrna
Orig protein idgnl|cribi|Naga_102749g1.6990
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:1081666..1081984 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102749g1gene4457Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4621rna4621-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26064.1cds4609Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4621 ID=rna4621|Name=rna4621|organism=Nannochloropsis gaditana|type=mRNA|length=933bp
CACTTTCCTTTTCCTTCCCCCCTCCCTCCCTTCCTCCCTCCCTCTCTCCA
TTCTCGTCACATAAACCGCAGGGGTGCGACTATCGGATCGCACCTCCCTC
CCTCCCTCCTTCCCTCCCTCCTTCTTCCCTCCCCTCCCCTCCTTCGCTTC
CTTCTTCCCTCTCATTCATGTCTTCCTTCTTCACCTCCCTCATCACCACC
ACCTCCTCCTCTTCTTCCTCCTCCTCCTCCTCCTCCCCCTCCTCCTCCCC
CCCCTCCTCCCTCCCCTCCTCCCCGCCCTCGCCCTCGTGAGACCGCGCGG
GCCGACCCCGTCATAGAAGATACCTTAAGAAATGCGATCCATTTTTCCTG
CCTCTGGGAATTGGTTTGATTGTGAAGGAAGGGACATGGGGAACGCTTTG
ATTGTAAAGGGAGGGAGGTTACGGCAGAATATGATAACAAGAGAGTTTTG
GAAGGCGATCGCCTTAATCGTAATGGCAATTTTGGGTTCATCGCATGCTT
TTGTACAGGGAAGTTGTGACTTTGGCTCCAATCTGTGAAAGGAAGGAGGG
AAGGAGGAAGGGAAGGAGGGAAGGAAGGAGGGAAGCGATGGCGGTCGGGG
CGAGACAGAGATTTTCTTGTCAATTAGAATATGTCATGGAATGAAAGGAG
GGGGAAGGTGGGCAGCAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGGAGATAAAGGATTGGCCTTGCTCCGATTTTGACGTGCTGT
ATCTTACGAGAAAGAATGTCACAAAATGAAATGAATCTTTAAGGATTCTT
GCGTGGTACCGCAGTCGTTTGAGTTCGGTAACGGCGATGTTTCTGATCAC
GTTCCTTGCCAAGAAGCGGAGGAAGGGAGGAAGGATGATGGGGAGGGAAG
GGGAGGAGGTTCTGGGAAGGGAGGAGATGAGGA
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protein sequence of rna4621

>rna4621-protein ID=rna4621-protein|Name=rna4621|organism=Nannochloropsis gaditana|type=polypeptide|length=80bp
MHLSPTRKWRERTLKPNKNGANAHARTVGREFLLVANFEKIYRNAVIPYN
LIRGENFSSALHASRCRAPASAKESNRGSP
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mRNA from alignment at CM002463.1:1081666..1081984-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4621 ID=rna4621|Name=rna4621|organism=Nannochloropsis gaditana|type=mRNA|length=319bp|location=Sequence derived from alignment at CM002463.1:1081666..1081984- (Nannochloropsis gaditana)
ATGCACTTGAGCCCCACTAGAAAATGGCGCGAACGCACTTTGAAACCCAA
TAAAAATGGCGCGAACGCCCACGCGAGGACTGTGGGGAGGGAATTCTTGC
TTGTTGCTAATTTTGAAAAGATATATCGCAACGCCGTACAATAAAGCTTT
TCGTTCCCAAAAAGTCGATTTTCAAAATTAAGAAGCTGTCATTGGATTCA
AAATGAAGCAGGTTATTCCGTACAACCTCATCAGGGGAGAAAATTTCTCT
TCCGCTTTGCATGCCTCCCGGTGTCGCGCCCCCGCATCCGCGAAGGAAAG
CAATCGGGGCTCACCCTAA
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Coding sequence (CDS) from alignment at CM002463.1:1081666..1081984-

>rna4621 ID=rna4621|Name=rna4621|organism=Nannochloropsis gaditana|type=CDS|length=486bp|location=Sequence derived from alignment at CM002463.1:1081666..1081984- (Nannochloropsis gaditana)
GTTATTCCGTACAACCTCATCAGGGGAGAAAATTTCTCTTCCGCTTTGCA
TGCCTCCCGGTGTCGCGCCCCCGCATCCGCGAAGGAAAGCAATCGGGGCT
CACCCTAAATGCACTTGAGCCCCACTAGAAAATGGCGCGAACGCACTTTG
AAACCCAATAAAAATGGCGCGAACGCCCACGCGAGGACTGTGGGGAGGGA
ATTCTTGCTTGTTGCTAATTTTGAAAAGATATATCGCAACGCCGTTATTC
CGTACAACCTCATCAGGGGAGAAAATTTCTCTTCCGCTTTGCATGCCTCC
CGGTGTCGCGCCCCCGCATCCGCGAAGGAAAGCAATCGGGGCTCACCCTA
AATGCACTTGAGCCCCACTAGAAAATGGCGCGAACGCACTTTGAAACCCA
ATAAAAATGGCGCGAACGCCCACGCGAGGACTGTGGGGAGGGAATTCTTG
CTTGTTGCTAATTTTGAAAAGATATATCGCAACGCC
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Synonyms
Publications