rna462, rna462 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna462
Unique Name	rna462
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2765
Alignment location	CM002455.1:1158783..1161368 -

Link to JBrowse

Properties


Property Name	Value
Product	an1-type zinc finger protein 5
Orig transcript id	gnl\|cribi\|Naga_100003g14.1871.mrna
Orig protein id	gnl\|cribi\|Naga_100003g14.1871
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:1158783..1161368 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g14	gene446	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30354.1	cds462	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna462	rna462-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:1158783..1161368-
coding sequence from alignment at CM002455.1:1158783..1161368-

mRNA sequence

>rna462 ID=rna462|Name=rna462|organism=Nannochloropsis gaditana|type=mRNA|length=2765bp
AGCTCCTTCGCTTCAGGGACGTGGTTACCACGACAAACATCACTCACAAG
CCACCTCATATCGCGGAACAAAAGGAAAAAGCAACCCTCCCGACGACCCA
GACCGCCGCTGGTTTTCGATAACAGAATTTCATTTACGACCTTATCACAT
CACATCGGTGCCCACGAACACTAAAATTCGGATTTCTAATGCACATTCAC
TAGCTTGATGGTCAAATTGTTGGAAAAGGCGTATTATAGCGGACGACTCG
GAGCAAGTCGCTGCTAAAGCCCGCTTTTGTCGTACATGCATGATCGGAAG
CTATGGCAAGAACAACTCAGCAGAATTCGAACGAGTCCGCGAATCTGTTA
CCTGCAAGCTCTCACACATACAATGGGAATGGGAACACGTCTTCCATCAG
CATCACACAAGCCAAAGCCCGAGGCTTGAGAAACAAGCACTTTCCCGGCC
TCGGGACTTACGATGAACACATTCATGTCGACGACGTCCAACTCTCCAAA
GCAGCGCATGCTCTGGAAAGGCAAAACCATCCGCACGAAATGCTAGGACC
ATGGATGGCTTCCTCGATTTGCGGTAATGATATTCTCAGCTCTTGCTTTT
ACTCCATTGGCCTGGTGACAAGTTACGCAGGGCAGCTTGCCCCCCTCTGT
TTTTTATTAGTGGGCCTTATCTTGTACCTTTTCCGGTCTGTGTACGGGGA
GGCCATAACGGCCATTCCTGTCAATGGTGGAACCTACACCCTCCTAATCA
ACACCACCTCAAAAGCCGTGGCTGCCGCCGCCGCTTGTCTGAGCGTGCTG
GCCTACATAGCCACCGGGGTGGTGTCGGCGGTGACGGCATGCAACTACCT
GCACGCAGTACTGCCCGACTTGATCGACGTCCCGATCGCCGCCTGTTGCC
TCCTTTCTCTGTTCGCGCTGGTGGTGGGGATGGGGCTGAAGGAGAGCGCA
GGGGTCGCGATGGTTATATGCGCCGTGCACGTCCTCACTTTCTTCGTCCT
CCTTAGCCTTGGTTTTCTGTACGTGATTTTCAACAATTTGGGCGAGCTAC
CCGCCAACCTTCTGCTGCCCTTTCCTGATGTAGCTGTCACGACCGCAAAG
AATGGAGGGGAGATCGAAGGCGCTGTGGGGGCCGTGGGCGAGGACATGCT
GCCAGGGAGCATTGGGACCGCGCTCATCTTCGGCTGTGCCGCCGGGCTCT
TGGGTGTGAGTGGTTTTGAGACATCGTCGCAGTACGTGGAGAGCCAGAAG
CCAGGAGTCTTTCTCCTTACTCTGAAGTACATGCAGCAAGCCGTCTGTGT
CTTCAACCCCCTGCTTTCCCTCCTCTCCATCGCCGTCCTGCCCGTCCCTG
TCATCACCGCCTTTTCTCAAACGGTCCTTGAAAGAGTCGCTCACACCATA
GGCGACTGGGTACAGGCCACCCTGGGGCTGGGTCCACACACCGGTCCGGG
TAGCACAGTGGATTTCGGGAAGTTTTTGCGGATATGGGTGTCCTTAGACG
CATTCGTGGTCTTAAGCGGGGCGGTTTTGACGGCCTACGTGGGCATCGAC
GGTCTACTTTACAGCATGAGCATGGATGGCTGCCTGCCCTCGTTTTTGTT
GGCCCGTAATGCTTGGCGTGGGACGGACCATTACATCATTCTCTCGTACT
TGGCGTTGGCCATCAGTCAGGTGCTCCTCACGGGAGGGGACGTGGAGGCC
CTTGCCGGAGTCTACGCCTTTTCTTTTCTAGGGGTGATGGCTCTTTTTGC
GGCCGGGTGTGCCATGCTGAAAGTCAAGCGCTCACAGCTCCCCCGCGACG
TGGTGGCGCCCTGGTCCCACGTGATCGGAGGGGGGGCGGCTGTCCTTCTT
GCCTTCCTTGTCAACCTGCAAAGCCAGTCAGAATACCTGCTGTACTTCCT
CTTGTACCTCGCAGGGGTAGGCATGCTGACTTTTCTCATGTTCCAACGCG
TGAGACTGCTCAAAGTCCTGATCTACTTCTCCCCTCCGTCCGTCGCAGCC
CTGCTTGTGGAAAAATTGCTGGCGCTGCGGTCAGACCGCGTGGTCTTCTT
CTGCAAGGACCCCAAAGACCTCTACATTCTTAACAAAGCGCTCACCTATG
TCCGAGCCAACGAAAGCACTGTCCACCACGTGACAGTGGTGCACTGCCGC
GGGGAGGGAGTGGGACAAGAGGATGGGGAGGGTAAGGCGGGTGCAAAGGC
AGTAGAGATGATCGACCGCATGTATCCAGCCATTCGGGTCAGCATGGTGC
AGGTACATCGGGCCTTCACTCCAGAGGTGGTGGAAGCGCTGTCTAAGATC
TTAGATGTGGGAAGAGAGCACATGTTCATATCATGTCCTGACGGGAAGCA
TCCGATTGACAAGCTGCGGGGTGTGCGCGTGATTACTCATTGATACCACC
ATGTACGGAGGATAACGTAAAGGCTGGAGGCACGTAGAGAGGGAATTTAG
ACTTTACCCGGCTGCGCATATTGTGTATGAAGTTCAGTATTTTGAAAGCG
GATGGCTTGTGCCATGAATGAGAGCAACAGATCTTATACGCGTTTGAGAT
GGCTGCTGGTTGCCACAAGAACTACGCTCACCCAACTTGAGCCTTGACAA
TGAGTTTCTATTTTTTGCGTTCAACAGGTGTACTTTTCGCTCCTAAGTGA
GGGCCGTAAACTCCTTTCTGCGTAGCTTGCTTTGTCCGGAAAATTGGCAT
TTCGATAAAAATAATGGCTCGGCCATTTTGAACAGTTCTTCCAAAAAAAA
AGTTACGGTTATGTA

protein sequence of rna462

>rna462-protein ID=rna462-protein|Name=rna462|organism=Nannochloropsis gaditana|type=polypeptide|length=229bp
MSDNGNTQACVDDTRPCVKGCGFYGSAQTGYMCSKCFKDTAGVTRASIES
VPVLSGTSSTAMPLLPPTLSHALSEVRQESTPSAETSSPSSTLGPSSATP
PEVPEHEQASIPQAMEVSASASSLDVPAALETAKVAAPVVQATPAAVENA
VSLPVQASPLPQKKKNRCAVCNKKVGLTGIECRCELVFCGVHRYPSQHSC
AFDHKEHDRQNLKSTLTGGGQFAKMTDQL

mRNA from alignment at CM002455.1:1158783..1161368-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna462 ID=rna462|Name=rna462|organism=Nannochloropsis gaditana|type=mRNA|length=2586bp|location=Sequence derived from alignment at CM002455.1:1158783..1161368- (Nannochloropsis gaditana)
AGCCGATGCCACGGCCGTCCCACGTGACAACCACCTGGGAGCGACCCCCG
CAATGAATGAAAACCCGGGGGGCACCTACGTGCTGGCCATGTGATGCAAG
GGCTTGGGATGCGTGTCTTGCGGGGTGGGACGGGCTTGGTGGCTGGCAGT
GGTTACCTTTCAACGCGCTGCACTTGAGGTGGACCGGGCTTGGCGTTTCG
AACGTCCCGGCAATGCCTTTCCTTGGCTCCTCTTGCCGCACACCACGCAC
AGGAATGGTTCCACACGGACGAGTTGTCGACACATGCATGCATTCTCCTA
CGCAAAGCCCTCTGGACGGGACGCGGCGGATGTGTAAGATGCGGGGTGCG
ATTTGACCACATGTTTTCGGGCGCCGGGTGCTTGGAGGTGGCGTTGCCAG
ACACCCAGTCCCCTTGCTGCCAATCGAGGGATGCCAGTCCGGCCTGTGCG
GCCTCTGCATGTTTCGGAGGATCCTGATCACGCAGAAAGGAATGAATTTT
GATTATCATAGGACACTGGGACATTCGTAAGGTTATGTTGTCCATTTTTC
CGACGGTGCCTGCCATGGAGGAAACAGCCGCGGCTCGTTTCTGTCCGCAG
GTCAGGTGCGCGCCTTGGACTCCAATGTGCGCAAGACGAATTGAATGCTT
CTTGCATTGGAATTTAGGGGGTGTGTGACTTTACGAAGTGGCTCTGAAGC
CGAAAGGAAGTGGGTGACGGTCCGCGGAGGACAGGATATCGTACGCGAAG
GATGTCGACACCTTACAGCGAGGCGCATGTCCTTATGACCTTCTGCTTTG
TGCGACGCAGACATTTTGAACGCATGCCAATTGCTGTAATCCCTTGACAA
GGGTCTTTGCGTGGTTGACCAGGTGATATTCAAGCCTCACAGAAGGCGGT
GGAGTGTTACATTCGAGGCCTGAAAAAGATCATGAAGCTGCGAACGGATT
CCTGAGCTTTCTCTCTTTTCCATTTTATCCCTGGCACAGGCAACCAGTCC
TCTTTCGCCACTATCACGTCGTCTATAATTGCTTAAGCTATGTCTGACAA
CGGAAATACACAAGCCTGCGTCGATGACACTCGCCCCTGCGTCAAGGGCT
GTGGTTTTTATGGCTCTGCCCAGACGGGATATATGTGCTCGAAATGCTTC
AAGGACACAGCAGGGGTCACACGTGCGTCCATTGAAAGTGTCCCAGTATT
GAGCGGCACCAGCAGCACCGCAATGCCGTTACTTCCTCCCACTCTGTCCC
ATGCACTTTCGGAGGTGCGACAGGAGTCTACGCCCTCGGCTGAGACGTCC
TCTCCCTCGTCCACCCTCGGCCCCTCCAGCGCCACCCCCCCTGAAGTACC
TGAGCACGAACAAGCATCTATTCCTCAAGCGATGGAGGTGTCCGCGTCGG
CGTCATCGCTAGACGTGCCAGCTGCTCTTGAAACGGCGAAAGTAGCCGCT
CCCGTGGTACAGGCCACGCCTGCGGCTGTGGAGAATGCTGTCTCCCTCCC
TGTCCAGGCATCACCCCTTCCGCAGAAGAAAAAGAACCGTTGTGCGGTGT
GTAACAAAAAAGTGGGGTTGACGGGTATTGAATGTCGGTGTGAACTAGTT
TTTTGTGGCGTGCATCGGTACCCGAGCCAACACTCTTGCGCGTTCGACCA
TAAAGAGCACGATCGCCAGAATTTGAAGAGCACCTTGACGGGGGGGGGAC
AATTTGCAAAGATGACGGATCAATTGTAATGAAGACTAGAAGAGTCACCG
CGGGGAGTGGGGGGGAGGGAAGCAGGCAAGAGGAAAGCGCTGGTGTAGGC
GATGGAGTGGGGAGGCGGGAGGCAGAGAAGGAGCCTATGTCTCCCTGTTC
GTGTTCAAATTTTTGGACTAAAGCACGTCGAAACTACGAAAAGCTAAAAG
GTGGGTCAGGCGTAGGAATCTTCATTCGGTTGTGTTTTCTCACGTGGAGC
AAGGCGAGCGATGGAGGAGGACTTTGAAGAGAGTTGCCGCGGGTTGTACT
TCCTCCAGGCGAGGATTGAACAAAGAAGAGGGAATGCGGCACGGCGGTTC
ATGCCAACACATTGTAAAGACGATTTTTAGTCTCTCTGAAAGAGGAGGGC
ATGGCGTGGAGATCAGCCCCGCTTCGGCTAGGAGTGTCGAGGGCCGGGGA
GGATGAAATAAAGCTACTGTGGTGGCTAGCTGCTCCTCGATGGTAGTTGC
ATGGTAATTTTCGCTGTTTCAATGTTGTCATGTCCGCACGAAAAGAGAGG
GGAGGGGACGGCTCGGCGCTGCGTCGCACCTGGACGTTGTCAGGAGAGGG
GATGAAATAGCTTTGGACGTAACGTGGGTGTAGAGGAAATCCTTGTCTCA
TGGCCAGTCCGAGACGTGGTCAAGCAGTTTCCAGTGAGTTACTCAGAGTG
AAGGCCGGAGAAGGAGGATCGCGAGGCTGTGTACATACTGACGGCAACGA
GGGAGCAGGCGGGAGCACGAGAGATAACTGGGAAGAGGTTAGTTTATTAC
GGCACGAAAAGAAAGAATGGAGAGACAAAATACTGGCGTCGGGCGGGTTT
TCTTCATGAAGACATCATATCAGTTGCAAGCTTTCG

Coding sequence (CDS) from alignment at CM002455.1:1158783..1161368-

>rna462 ID=rna462|Name=rna462|organism=Nannochloropsis gaditana|type=CDS|length=690bp|location=Sequence derived from alignment at CM002455.1:1158783..1161368- (Nannochloropsis gaditana)
ATGTCTGACAACGGAAATACACAAGCCTGCGTCGATGACACTCGCCCCTG
CGTCAAGGGCTGTGGTTTTTATGGCTCTGCCCAGACGGGATATATGTGCT
CGAAATGCTTCAAGGACACAGCAGGGGTCACACGTGCGTCCATTGAAAGT
GTCCCAGTATTGAGCGGCACCAGCAGCACCGCAATGCCGTTACTTCCTCC
CACTCTGTCCCATGCACTTTCGGAGGTGCGACAGGAGTCTACGCCCTCGG
CTGAGACGTCCTCTCCCTCGTCCACCCTCGGCCCCTCCAGCGCCACCCCC
CCTGAAGTACCTGAGCACGAACAAGCATCTATTCCTCAAGCGATGGAGGT
GTCCGCGTCGGCGTCATCGCTAGACGTGCCAGCTGCTCTTGAAACGGCGA
AAGTAGCCGCTCCCGTGGTACAGGCCACGCCTGCGGCTGTGGAGAATGCT
GTCTCCCTCCCTGTCCAGGCATCACCCCTTCCGCAGAAGAAAAAGAACCG
TTGTGCGGTGTGTAACAAAAAAGTGGGGTTGACGGGTATTGAATGTCGGT
GTGAACTAGTTTTTTGTGGCGTGCATCGGTACCCGAGCCAACACTCTTGC
GCGTTCGACCATAAAGAGCACGATCGCCAGAATTTGAAGAGCACCTTGAC
GGGGGGGGGACAATTTGCAAAGATGACGGATCAATTGTAA

Synonyms

Publications