rna4618, rna4618 (mRNA) Nannochloropsis gaditana

Overview
Namerna4618
Unique Namerna4618
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length342
Alignment locationCM002463.1:1065459..1067285 +

Link to JBrowse

Properties
Property NameValue
Productaldehyde oxidase
Orig transcript idgnl|cribi|Naga_101472g1.9924.mrna
Orig protein idgnl|cribi|Naga_101472g1.9924
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:1065459..1067285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101472g1gene4454Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4618rna4618-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26067.1cds4606Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4618 ID=rna4618|Name=rna4618|organism=Nannochloropsis gaditana|type=mRNA|length=342bp
ATGCCTCCTTTCGTCCCGTTCCCGTCCTCCACCCTGCGCACGGAGGCAGC
AACGACATTGGGAAGGACGAAGGAGGAGGGAGGGAGGAAGCCAGCCTTTT
GGTCTCAAACAGTTGATGCCTGTGGACCCAACGCCTTGTCAGAGAATGAC
AGGAAAAAAGATTTGCGCTACGATTGCACTCAAGCATTGACGAGCGCGTT
GGAAATAGATGATGTGGCCATGCTATATGTTCCAATGCAATACCATCCCA
CCCTGCGCGATTCCACATTTTCTTGGGGGGTGCTACACGTTTGCGATTGT
TCTGTCGAAACTGTGCACGTGAAGTCTTTTGCTTCGGACTGA
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protein sequence of rna4618

>rna4618-protein ID=rna4618-protein|Name=rna4618|organism=Nannochloropsis gaditana|type=polypeptide|length=185bp
MMEGPRSESFQILVTHLSLSFPPRQVDIGQIEGAFVQGLGYYLTEEVEFD
PEGRLLTNGTWHYKPPGVNDIPLHFHVSLLPPPSAGTREQRRSRTKVEKV
GQGEEKKEKEGLILSSKATGEPPFMLASSAYFGVVAAIREGKREWGQGGK
RTSGETLVKEVPLAISATIKKRIEAIDVPVEAFVL
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mRNA from alignment at CM002463.1:1065459..1067285+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4618 ID=rna4618|Name=rna4618|organism=Nannochloropsis gaditana|type=mRNA|length=1827bp|location=Sequence derived from alignment at CM002463.1:1065459..1067285+ (Nannochloropsis gaditana)
CGCAGATCCCCAACAGCACCGGCACCGGCGGGTCCAGCACCTCCGAAGCC
GCCGTACAAGCCGTCTTGAACGCCTGCGACATCCTCCTCGCACGATTAca
gcccttccttcccccccgggaccctaccccgacctcccccccgccctccc
ccccgacctggTCCGCAGCCGTTCAAGCCGCCGCGGCCGAGGGAGTGAAC
CTGGCGGCGGAAGGATGGTTCGCTCCTCCCACCGATCGAGGTGCACCCTT
TGACTATTTCGTTTACTGCGGTGCTTTCTCCGAAGTCGAGCTGGATCTAT
TGACGGGCGAGGTGACGGTTGTGGCTTCTACCATTGTGTACGACGCAGGC
CGGAGTTTGAACCCGCAGGtgcgcctctttttcccgcgcgccctttctcc
cttttcccccccctccctcttttgcTGCCTGCCTTGTGCGGTCACATTCT
GAAGACTTGATTCCTCATCGGTCCCTTTGGCGAGTTccacgggaaggaaa
gcaatgTCCTGGGACTCGTCGTGTTCGCATGATGGAGGGTCCGAGAAGCG
AATCTTTTCAGATTCTTGTGACGCATCTTTCCctatccttccctccccgg
cagGTGGACATTGGGCAGATCGAAGGTGCTTTCGTGCAGGGCCTCGGGTA
CTATttgacggaggaggtggaattCGACCCGGAGGGGCGCTTGCTTACGA
ATGGCACCTGGCACTACAAACCCCCAGGGGTCAATGACATCCCCCTTCAC
TTCCACgtaagcctcctccctcctccctcggcagGGACGCGCGAGCagag
gaggtcaaggacgAAAGTAGAAAAAGtaggacaaggagaggaaaagaagg
aaaaggaaggattgATTTTGAGCAGCAAAGCCACAGGAGAACCGCCTTTC
ATGCTGGCGAGCTCCGCATATTTTGGCGTGGTTGCTGCGATtcgggaagg
gaagcgggagtgggggcagggagggaaacgcaCAAGCGGGGAGACGTTGG
TAAAAGAGGTGCCGTTGGCGATTTCGGCGACGATCAAGAAGAGAATCGAG
GCGATCGATGTGCCTGTGGAAGCGTTCGTGCTgtaggagaggcgggaaca
ggagaaaagagtgaaggggaggagacggagttGGTAGTACCTTGGTGGTC
GTCATGTAGCTGTCAAACCACACCACgcacaagaagaggagaaaactGCG
GAGGCATAGTTGGCATGAGGTTGCAATGGATGGAATATATCGTACCACGC
ATCACATGAATGTGGGGAGACCATAGACTGGTTTGCAGATTAAAAACACC
CTTCTCTTGTCTGCAATTAAGACGGGGCACTGAAGAGAAGAATTGCTttg
agggaaggagatgggatGTGGGGATGGCTGCAGCCATAGAGTAGCCCTAT
ATACACTTGGCAAGAAGCATAAGAATATCAGATGTTACGGGCGTTTGGGT
TGTGATATCAACCAATTTGTGAGGGCGTATTATGTACAATTTGGTGGTAC
GCTTTTGTATTTTCCCCAGAATTCCTGATATCGTCTTATGGATGTGTCGA
TCGGGATGTAAAACGGCTTCTTCCATGAACGCCAGAAAATAGATTGCAAG
CGAGCGTGGCACTTTGAAACCAACGAAACTTGACAGCGTGACTCTTACGT
CTATTTCTACCGCACGTTAAACGTGAGGGGATGAACAAAGTCAATTTTGG
AGGCGATTAGGTGCGCCGTGCGTGCACTCCATCGTGGTGGTGGTTAATAG
GCGGATGGATACATAGAGATAAGTTTTCCTTTGCGCTCATATATtcacat
atatatatattatGATGTACTCTATAT
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Coding sequence (CDS) from alignment at CM002463.1:1065459..1067285+

>rna4618 ID=rna4618|Name=rna4618|organism=Nannochloropsis gaditana|type=CDS|length=558bp|location=Sequence derived from alignment at CM002463.1:1065459..1067285+ (Nannochloropsis gaditana)
ATGATGGAGGGTCCGAGAAGCGAATCTTTTCAGATTCTTGTGACGCATCT
TTCCctatccttccctccccggcagGTGGACATTGGGCAGATCGAAGGTG
CTTTCGTGCAGGGCCTCGGGTACTATttgacggaggaggtggaattCGAC
CCGGAGGGGCGCTTGCTTACGAATGGCACCTGGCACTACAAACCCCCAGG
GGTCAATGACATCCCCCTTCACTTCCACgtaagcctcctccctcctccct
cggcagGGACGCGCGAGCagaggaggtcaaggacgAAAGTAGAAAAAGta
ggacaaggagaggaaaagaaggaaaaggaaggattgATTTTGAGCAGCAA
AGCCACAGGAGAACCGCCTTTCATGCTGGCGAGCTCCGCATATTTTGGCG
TGGTTGCTGCGATtcgggaagggaagcgggagtgggggcagggagggaaa
cgcaCAAGCGGGGAGACGTTGGTAAAAGAGGTGCCGTTGGCGATTTCGGC
GACGATCAAGAAGAGAATCGAGGCGATCGATGTGCCTGTGGAAGCGTTCG
TGCTgtag
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Synonyms
Publications