rna4617, rna4617 (mRNA) Nannochloropsis gaditana

Overview
Namerna4617
Unique Namerna4617
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1431
Alignment locationCM002463.1:1062151..1062543 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101582g1.10082.mrna
Orig protein idgnl|cribi|Naga_101582g1.10082
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:1062151..1062543 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101582g1gene4453Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4617rna4617-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26068.1cds4605Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4617 ID=rna4617|Name=rna4617|organism=Nannochloropsis gaditana|type=mRNA|length=1431bp
TTGACAAGGAGGAAACGTCCTTTCTCGGGAAAACATGGGTACACATTGCC
CGAAGGTGGAAAATTGTGAGTTACACTATGATCCAGGATGTATATTTGTT
TGTCTTGGTCATGAAGCGGGGCATTATTTGAGCCGATCCACGTAGCCCCC
GTGCCCGGACTTTGCGTGTTTTCAGTGTTTTTTTTCTTCCCCCCCCCCCG
CACCAATCTCTCGTTCGACAAGCATAGGAATAAGTAGTATCAGCTTTGCG
AAGACAAGATTTAAAACTTGAGCTGTCAAAATCCGTCGTATTGTCCGCCA
ATAAAGTTCGGATATCCCTCTCCTGGCCCTCCTCCGGGTGGGAATTTGGT
TCCTCCCTGTGAAGAGACAAGTGGCATCCGTCGAGCAAACGTTTTTCAGG
GCGTACGTGCAGGACGAAATTGACATGCCCCGGAGAAGAACTATGTTCAA
TACAGGGAAGAGTCATGTGTAGGATAACACTAGGCAAGAATTCAAGTGGA
GATTAATAGGATATAGGATCCCACGGGGGCACCGATCACCTCCCTCATCT
TGTCCCCTTGCCCCGGGATGTGTCAAAGGAGTCGTCTGAGAAAGGTTGCG
CTCTATCCGACCATTGCATGGAGCAAAGAGTCCACACACGTCGAGAGAAG
GCCCGGGCGAAGGTGGAACCGCGACTGCGTGGCGGGATTTTTGGCCCTGA
TGGCTTTCCTCGGACGTGGGGACCGGGTCGTGCTCGCTTTTTCCCTGCCA
TCTGTCCACAGAGCCCACGCGGACCACCAAGCCTTCCACCGCAACGTCTA
CATTAGCCACCCAACACCAAGTCGGACGGCGCAGCCTTTTCCTCCCGCTT
CCCCGCCTCTCTTCGTCTCACGCAAGGACCATGCCTCCGAAGGCAATCCA
TGGCACTACCGCCTCATTCTCCTCCGCCACGGGGAGTCCGTGTGGAACCG
AGACGGTCGGTACATCGGTTGGACGGACGTTCCGTTGACGGAGAGAGGGG
AAAGGGAGGCACAGGCCGCCGGGAGAATGCTTCGACAGCAAGGGTTGCGG
CCATGTCAGGTCTTTACCTCCTACTTGAAACGGTGCGTGAGGAGGGGGGA
GGGGGTTCGTATGGTCATCGTCTACGGACTTCCCGCCGTCGCTTTTTGCG
TTAAGGCGGGCAATGGAGTGGGAAATGCCACCCCTTGACATGGCATACGG
TATGGCTACGGGTGGGGGGATGAAGAAAAAGGCCGAGCTTGGGAAGGTGG
GGGCGGCCGGTGAAGTCGGGAATTTCCCGGTGAAGTCGGGAATGTCCCTC
GGAATAGCCGGCGTAGGATCCCGGGGAGGGGGGGGTGCCAACATGGGAAA
AAGGGAAATAATTAGGGTTGAGGTTCAATGCTTTTTCGGTCCTGGTTCGT
CATATATCGGGCACGTCCAGGGAGGAGGGAG
back to top

protein sequence of rna4617

>rna4617-protein ID=rna4617-protein|Name=rna4617|organism=Nannochloropsis gaditana|type=polypeptide|length=113bp
MPPFVPFPSSTLRTEAATTLGRTKEEGGRKPAFWSQTVDACGPNALSEND
RKKDLRYDCTQALTSALEIDDVAMLYVPMQYHPTLRDSTFSWGVLHVCDC
SVETVHVKSFASD
back to top

mRNA from alignment at CM002463.1:1062151..1062543+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4617 ID=rna4617|Name=rna4617|organism=Nannochloropsis gaditana|type=mRNA|length=393bp|location=Sequence derived from alignment at CM002463.1:1062151..1062543+ (Nannochloropsis gaditana)
ATGCCTCCTTTCGTCCcgttcccgtcctccaccctgcGCACGGAGGCAGC
AACGACATtgggaaggacgaaggagtaCTGGGATGGGAACGGAgtgggaa
gacggggaggatgatgaaaatggagggagggagggaggaagccagcCTTT
TGGTCTCAAACAGTTGATGCCTGTGGACCCAACGCCTTGTCAGAGAATGA
CAGGAAAAAAGATTTGCGCTACGATTGCACTCAAGCATTGACGAGCGCGT
TGGAAATAGATGATGTGGCCATGCTATATGTTCCAATGCAATACCATCCC
ACCCTGCGCGATTCCACATTTTCTTGGGGGGTGCTACACGTTTGCGATTG
TTCTGTCGAAACTGTGCACGTGAAGTCTTTTGCTTCGGACTGA
back to top

Coding sequence (CDS) from alignment at CM002463.1:1062151..1062543+

>rna4617 ID=rna4617|Name=rna4617|organism=Nannochloropsis gaditana|type=CDS|length=684bp|location=Sequence derived from alignment at CM002463.1:1062151..1062543+ (Nannochloropsis gaditana)
ATGCCTCCTTTCGTCCcgttcccgtcctccaccctgcGCACGGAGGCAGC
AACGACATtgggaaggacgaaggaggagggagggaggaagccagcCTTTT
GGTCTCAAACAGTTGATGCCTGTGGACCCAACGCCTTGTCAGAGAATGAC
AGGAAAAAAGATTTGCGCTACGATTGCACTCAAGCATTGACGAGCGCGTT
GGAAATAGATGATGTGGCCATGCTATATGTTCCAATGCAATACCATCCCA
CCCTGCGCGATTCCACATTTTCTTGGGGGGTGCTACACGTTTGCGATTGT
TCTGTCGAAACTGTGCACGTGAAGTCTTTTGCTTCGGACTGAATGCCTCC
TTTCGTCCcgttcccgtcctccaccctgcGCACGGAGGCAGCAACGACAT
tgggaaggacgaaggaggagggagggaggaagccagcCTTTTGGTCTCAA
ACAGTTGATGCCTGTGGACCCAACGCCTTGTCAGAGAATGACAGGAAAAA
AGATTTGCGCTACGATTGCACTCAAGCATTGACGAGCGCGTTGGAAATAG
ATGATGTGGCCATGCTATATGTTCCAATGCAATACCATCCCACCCTGCGC
GATTCCACATTTTCTTGGGGGGTGCTACACGTTTGCGATTGTTCTGTCGA
AACTGTGCACGTGAAGTCTTTTGCTTCGGACTGA
back to top
Synonyms
Publications