rna4612, rna4612 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4612
Unique Name	rna4612
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2011
Alignment location	CM002463.1:1045967..1047715 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100278g3.6825.mrna
Orig protein id	gnl\|cribi\|Naga_100278g3.6825
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:1045967..1047715 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100278g3	gene4448	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26074.1	cds4600	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4612	rna4612-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:1045967..1047715-
coding sequence from alignment at CM002463.1:1045967..1047715-

mRNA sequence

>rna4612 ID=rna4612|Name=rna4612|organism=Nannochloropsis gaditana|type=mRNA|length=2011bp
TTACAGGTGACTATATGCCACTTTTTAGCTATGGAAGGCGCAGCGATGCG
AGAAGCAGCCCTCCTCCCTCCGGCGCTGGAGATGCCAATTCGTCGTCTTC
CAAGCGGCGCATTGAAAGCGGGAAGAAGAGCAGCAGCAAACAGACCAAAG
AAGATCAACGTTTAGCCCGACGATATTTTCAGATACAGGACCGATCTCTT
ACCGCCCTTCGTATCCTCTTTGTGGTCGGCATACCGCTGACTATCATCAA
TATATCATTCGCTTGTGTGTACGCCTGGATTTTTGCGAATCAGTACAGCT
ACACAAAGGATGACTGGCAACGGTGTTTGGTCTATCCAAATCAGGCTGTC
GATCCCCTTGGAGGCTCAACAGCAGATAAAACGAACTACCTTATGGCCGC
AGCCTCGTATGCCGGTCGCGTCTTTGTCTTCATAATCGTCGTCTTCAAGA
TGGCTTACGTCGGAGTAAAGGACACGGATATCCTTCCCTACTCCCTCTTT
GCAAATGTGATGGCAATTCTCGGCATTATCGTCTACAGAGAAGCGGAGCC
TATTCAGCCGCAACCCCAGCAACTCTCTGCTACTCTCTTGACACTGGTCA
AGTACATACAACCGAACATGTACTCTTTCCCCGCCGCGGCGAAATGGGCC
CCGGCCTCTTGCAGCCTGGCTTACGCCCTGAACAAGTGGTTCCTGATCTT
TCAAATACTGGTCGTCGTCCTCATGTGCTCTATTTTCCTCGTCATTTCCA
CGTGTGCTGTTGCCAACTACCGAATAGGAAAGCGTTGGCGATTCCAGTTA
GAAGCTAACGGCTACCCCTTGGGACTTCTCGTCATCGCTTTTGTCGGCTA
TGTGACATGCTTCTATGCAAAAGAGACCGTGGCACAACTGACACTGGACG
TCTTGAATGAATCTAAACTCAACTCTATATTTGCCTTCAGTAAGGGAGAA
CTCGACATTGTCTCGCTGACAATGATGATGACCTTGGGAGCGATTGGTGT
TGGTACTTGCAAGGGCGACCTAGAAAAATTTAAACTCGGCGCCTTCATTT
CCTACATTCACGTGGTCCTCTCCTACCCGTCCGTGCTAGCAACCATCCAT
GCCTACAACAGCGTCACCTATCCTTACAACAAGGATAAATCGCTAGCACA
AGCCTTTTCCATTTGGTCGTTGGATCCTGCCTACGGTTGTCCTGCCTACG
TAACAGCCAAATCAGCTATTTTCGAGCGCTTCCCCAAGGTAAGTAAGAGA
AAGGAAGGGAGGAGTGAAAGAAACAAGGAGAAGCGTAAGGGGGTAGATGA
TCGTGTCCGAGTCGAGCAGGGTTGATGGGTGCGTAGGAGTGTATTTCTTA
TGTTTCTCGAGACTATAGCATATCTATCGCGCACTCATAATCTGCGCTGG
TCCGTCCGTCCTTGTCGTCGACGTTTTCTTACGTCCCTTATCTTTCGTAG
GAAGCTGAGACCCTCTGTCGCATGTGTCATTTGTCCTTGATCGGACAACT
CATACAATTTGGGGCGCAGCACTTAGTTGTCATAGCTTGCCTATATATCC
TCTATGCGAATCGCGACCTCCCTGCTCAGCGATTAAGGCTTGGAACCTAC
ATTCCAGACTATCTAGGAGGTTTACAAGTGAACGTTTCTGTCAACGCGCC
TATTGAGGGCTACAAACGGAACTCCTCTCGTGTTGCCGTTTCGCATGAGA
AGAAAAAAGGGCGCACCGAAGTGCCCTATGGTGTCCACTATATCCGTCTT
CCGGGGGAGCCTGAGGAGGAAGACACGATACTGGGAGACAGAGGTGCGGA
GGAGGGAAAGATTAAAGATGAAAATGATAACGTGGTTATTGGGGTGTAAG
GCTTTGAAGGTCCTGTCCGGAATAAGTAGGTTACAAAAATTATGAACAAA
TTACTCGAAAAGAAGCATTTCAAGCGCTTATCTGTCTTTAATTCTTCAGA
AGTGAATTCTTACATCGATGACGCGAATTGCGACGTTGCACGTCAGTACC
AGTATGTATGC

protein sequence of rna4612

>rna4612-protein ID=rna4612-protein|Name=rna4612|organism=Nannochloropsis gaditana|type=polypeptide|length=246bp
MSSPCSFPGSFNPKYLLLCRALGVAAAMTTASSRCSQRPPPASALPFPSF
SQCNQNATSSCSRRTPLSPSHPQGHGSFCSNRKSPPPPPPPPPPPPPPPP
PPPPPPPLPPPPPPPHLYHPIASSPSQQQQLQQPHPFAPAPPLPPFIPVL
RGCPHLPGRHRLPLKAERQTLPPRPHASRSIPRPSEPFLPSSFPCCVRLR
CGRHCCWCCRRRHHPSLLPPPLGNASRLSPQSLLSHCLCCLPEAPS

mRNA from alignment at CM002463.1:1045967..1047715-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4612 ID=rna4612|Name=rna4612|organism=Nannochloropsis gaditana|type=mRNA|length=1749bp|location=Sequence derived from alignment at CM002463.1:1045967..1047715- (Nannochloropsis gaditana)
TTAGGAGCTCTTTCAGCGGCTTAGAGCGGGTGTGGATGCGATAATACGGC
CGCTTACATTTTTCTCGTCGAGGAAGTGGTGAGCCCGATGGGCCGAGCTT
ACAAGGACGAGAAGGGCAAGAAAAGCAAAATCGAACTGAAAGGCGATGAA
GGATTAAACACATTCAAACTGCGTTATATTACTGTTACATTCTTCATCTA
TGAGTTCACCGTGTTCCTTCCCTGGCTCTTTCAACCCGAAGTACCTACTT
CTTTGTCGTGCTCTTGGAGTCGCGGCGGCAATGACCACTGCGTCGTCTCG
CTGCTCGCAGCGACCTCCACCGGCTTCCGCACTACCTTTCCCTTCTTTTT
CTCAATGCAATCAAAATGCTACCAGCTCTTGCAGCCGCCGCACTCCATTA
TCCCCCTCCCATCCTCAGGGTCATGGGTCATTTTGCAGTAACAGAAAATC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCTTCCCCCTCCTCCTCCTCCTCCTCACTTA
TACCACCCTATTGCATCCTCTCCATCGCAGCAGCAGCAGTTGCAGCAGCC
GCATCCCTTTGCTCCTGCTCCACCTCTTCCGCCGTTCATCCCTGTTCTCC
GCGGATGTCCTCATCTTCCCGGCAGGCATCGTCTTCCACTGAAAGCGGAG
CGTCAAACCCTGCCTCCTCGTCCTCATGCGTCGCGATCCATCCCTCGTCC
GTCTGAACCTTTCCTTCCTTCATCTTTTCCTTGCTGTGTTCGTCTCCGCT
GCGGTCGTCACTGCTGCTGGTGCTGCCGCCGCCGACATCACCCTTCCCTA
TTACCCCCGCCACTCGGGAACGCTTCGCGGCTCTCCCCGCAATCTCTACT
CTCACACTGTCTCTGTTGCTTACCTGAAGCACCCTCTTGAACACCAACAG
GGACTCTACAAGTCCGTGGCCTCCTAGGCCGCCCAAGCGAGCTTGATGCT
CAGCGAGTCTCGCCTCCGTGTGGAAAAGGTCTCGAGTCTCGTGACGAGGA
TGGGCCCGAGGGGGTTCGTCGGGGGCCACCAAGGGGTGGGGCTGGCGGCT
CTGTACGGTGAGGAGGGTACCGGTGTCCGCGCCGAGTGGGGTTCCCGGGA
TATGGTGGTGCACCTTGGGGAATACGTGGCGGGCGTGGTGGACAAGGTAA
AGAAGAAGAAGAGCAAGGGGCTCTTCTTCTTCACGCTCCTCGTCCGCCTC
GTTCTCTCCAAGGTGCACCACCACCTCCGGGGCACCCCACTCGGTGCGGA
CACCGGTACCCTCCTCTCCGTAATGGCTTTCGGACCCAGACTTATATTCG
CTCTACATCAACAGGAGTTGAAACGTGGCACGATTTGCTCATGCATGCGC
ATGGATTCTCTCTTTTTTCATAGCGTCACCTAAAAGGAGCACTAAAATAA
GTCAGAAATCAGCCAGCACGGCGAAACCAGGGTCGAATACGATGTGCGTA
TCTCATGGGTGCGTGGGTACTTACCGCTGGAGACAAATAATAGCAATGTA
ATGAATTTCTTATGAAAGCAGGCAACTTTATTGCACATTTTCGGAGAGGT
GAAATACCGAGATATAGTCTGTAAGCGGCCTCTTCTGTAAAGGAGATGTC
ACCTTCATTTTTACCAAAATTTATGCACACGATGAACATTCAACCATCAA
CCACCAACCAAACATCTTTACTCGATGTTTCACAATTGAAATTATTATC

Coding sequence (CDS) from alignment at CM002463.1:1045967..1047715-

>rna4612 ID=rna4612|Name=rna4612|organism=Nannochloropsis gaditana|type=CDS|length=741bp|location=Sequence derived from alignment at CM002463.1:1045967..1047715- (Nannochloropsis gaditana)
ATGAGTTCACCGTGTTCCTTCCCTGGCTCTTTCAACCCGAAGTACCTACT
TCTTTGTCGTGCTCTTGGAGTCGCGGCGGCAATGACCACTGCGTCGTCTC
GCTGCTCGCAGCGACCTCCACCGGCTTCCGCACTACCTTTCCCTTCTTTT
TCTCAATGCAATCAAAATGCTACCAGCTCTTGCAGCCGCCGCACTCCATT
ATCCCCCTCCCATCCTCAGGGTCATGGGTCATTTTGCAGTAACAGAAAAT
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCTTCCCCCTCCTCCTCCTCCTCCTCACTT
ATACCACCCTATTGCATCCTCTCCATCGCAGCAGCAGCAGTTGCAGCAGC
CGCATCCCTTTGCTCCTGCTCCACCTCTTCCGCCGTTCATCCCTGTTCTC
CGCGGATGTCCTCATCTTCCCGGCAGGCATCGTCTTCCACTGAAAGCGGA
GCGTCAAACCCTGCCTCCTCGTCCTCATGCGTCGCGATCCATCCCTCGTC
CGTCTGAACCTTTCCTTCCTTCATCTTTTCCTTGCTGTGTTCGTCTCCGC
TGCGGTCGTCACTGCTGCTGGTGCTGCCGCCGCCGACATCACCCTTCCCT
ATTACCCCCGCCACTCGGGAACGCTTCGCGGCTCTCCCCGCAATCTCTAC
TCTCACACTGTCTCTGTTGCTTACCTGAAGCACCCTCTTGA

Synonyms

Publications