rna46, rna46 (mRNA) Nannochloropsis gaditana

Overview
Namerna46
Unique Namerna46
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length621
Alignment locationCM002455.1:138774..140225 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100440g2.2721.mrna
Orig protein idgnl|cribi|Naga_100440g2.2721
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:138774..140225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100440g2gene45Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30626.1cds46Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna46rna46-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna46 ID=rna46|Name=rna46|organism=Nannochloropsis gaditana|type=mRNA|length=621bp
ATGGCATATACATTTGTAGCTGCAGCGTACAAACGGGGGATGTCAGCTTT
GCACACGGTGTCATTCATTCGTCCTAGCAGCAGCAGGTCTTGCTCTTCTC
CCGTCCTAGGGTGGGGCAGCAATTCCGGCAACAAGAAGTACGACATGAGC
TCGGGTGCACGGAAGGCCTCCTCTTTGGAGGCACCGGGACCGAGCACGGG
CACGGGCATCTCCGGTAGCTGGGGCCAGACAGGCGCTACCCCCCTCTCTC
TCCCCGACAGATCGCCCGGCGAAGGGCCTATGCTCACCTACTGGATCAAA
GACACGCTCTACGTGGCCGTGACCAACCGATGCAACACCGTGCCTCTCCA
CGTCACGCGCGGCCCTGGCTTCTCCATGGGCGACTTCAGTCCCCTTCCCC
CCTCGTACGAGCCCTCGGAAGACGAGCTCATGGCCTCCATCACCGGCGCG
CTGGCGGCCTCCCACTCCCTCCTTAACCGGGCTTGGACCGAGGTATGTTT
CGCTGGCTGGGGTGAACCTACCTTAAGATGGCCCACGGCTGCGGCTGCGC
CTGAGCACGAACGGTTTGGGGAATGTGGTGCAGAGGAAGAGCATCGTGAG
GGACGTGGCCGAAGCCTTTGA
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protein sequence of rna46

>rna46-protein ID=rna46-protein|Name=rna46|organism=Nannochloropsis gaditana|type=polypeptide|length=364bp
MASMQESSLIQGESGPQGGKEKDQGLERLPSVLVLCDQTPGEKATEGGRE
GGREGGREREEDGGFEFEPKTVRGSVQGAEHGASERGLDRSRSDRDDLEE
TRGMLWTERPDHLLGDLQRAVDEGSAAGALVQRKFRRPLSPPLPPPTRWA
EEEEEAGWRALLDIEERVQRMMDSLQEHISSPSSLPMPPGPGPSRSDPLV
SSPRPRESSWSQPISFPSPPLSPPPHGSQTTTASSQSQGARPTPSSRPGI
KSTPVEDSSRPGARSTQSRRATPPPPDPLRPAFPCLSDISRPSFVSGTGR
RLRRQRLDARLGELNASIQNIMEELRCLGKGERGQGRREEQWEEERRKVL
EARRAAYAFGSGVM
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mRNA from alignment at CM002455.1:138774..140225-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna46 ID=rna46|Name=rna46|organism=Nannochloropsis gaditana|type=mRNA|length=1452bp|location=Sequence derived from alignment at CM002455.1:138774..140225- (Nannochloropsis gaditana)
GAGGCAAGGGCGGGAGGGCAGCGAAGAAGGCAGGGAAGGTCCCGATGCCC
GGGGTAGTCCCACCGGCTGTCCGGGGAAAGGCGTGCCGCTCCCGGAGAGT
GGGGCCGTGGGGGTCCAGACAGAGAGGGGGAAGCTTCCCGTAGTCCAGGC
TCTCGTCACGTCGTCGGACAGGAAAAGGCCGGGAACGATGGCGTCGATGC
AGGAATCTTCTTTGATTCAAGGCGAATCGGGGCCGCAGGGGGGAAAAGAG
AAGGACCAGGGACTGGAACGCCTCCCGTCGGTGCTTGTCCTGTGCGACCA
AACACCAGGAGAGAAAGCGACGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GCGGGCGGGAAAGAGAGGAAGATGGTGGGTTCGAATTTGAACCCAAGACA
GTGCGAGGGAGCGTTCAAGGGGCTGAGCACGGAGCCTCCGAGCGGGGACT
GGACCGGAGCAGATCGGATCGGGACGACCTCGAAGAAACGCGAGGCATGC
TGTGGACCGAGAGGCCAGACCACCTTCTCGGAGACTTGCAGCGTGCTGTC
GACGAGGGCAGCGCGGCAGGCGCACTCGTTCAACGAAAGTTTCGCCGCCC
TCTTTCTCCGCCTTTACCTCCACCCACCCGTTGGGCAGAGGAGGAGGAGG
AGGCAGGGTGGAGGGCCCTTCTCGACATCGAGGAGCGGGTGCAACGTATG
ATGGACAGCCTACAGGAGCACATTTCCTCCCCTTCCTCCCTCCCCATGCC
GCCAGGCCCTGGCCCTTCCCGTTCCGATCCGCTCGTCTCCTCCCCTCGGC
CACGCGAGTCGTCGTGGTCCCAGCCCATCTCCTTTCCTTCCCCTCCCTTG
TCGCCTCCGCCCCATGGCAGCCAGACCACCACAGCCTCCAGTCAAAGCCA
GGGCGCCCGCCCCACCCCCTCTTCTCGTCCTGGTATCAAGAGCACGCCCG
TGGAGGATTCCTCCCGACCGGGCGCCCGGTCCACACAATCCCGCAGAGCC
ACGCCCCCCCCTCCAGACCCTCTTCGCCCTGCATTCCCTTGTCTCTCGGA
CATTTCCCGCCCAAGTTTTGTTTCAGGGACAGGACGTCGACTTCGCCGGC
AACGGCTGGATGCACGTTTGGGGGAATTGAACGCGTCGATCCAAAATATC
ATGGAGGAGTTAAGGTGCCTAGGGAAAGGAGAAAGGGGGCAGGGAAGGAG
AGAAGAGCAGTGGGAGGAAGAGCGGAGGAAAGTTTTAGAAGCGAGGAGAG
CCGCCTACGCCTTTGGAAGTGGCGTCATGTGATAGTCCCGGAATATGAGG
TCACATGAAGCGTGAAAGAGGGAGCAATAGGAATGGCCCCGGGAACCCCC
CCACACCCCTGACAAAAAGAAAAAGCCGGCGAGGCGGTGGTACTCTTCAT
AAGTCTCAGTTCTACCCGCACAGGGTACGGTCGCTCGGTCAACGCGTTTC
CA
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Coding sequence (CDS) from alignment at CM002455.1:138774..140225-

>rna46 ID=rna46|Name=rna46|organism=Nannochloropsis gaditana|type=CDS|length=1095bp|location=Sequence derived from alignment at CM002455.1:138774..140225- (Nannochloropsis gaditana)
ATGGCGTCGATGCAGGAATCTTCTTTGATTCAAGGCGAATCGGGGCCGCA
GGGGGGAAAAGAGAAGGACCAGGGACTGGAACGCCTCCCGTCGGTGCTTG
TCCTGTGCGACCAAACACCAGGAGAGAAAGCGACGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGCGGGCGGGAAAGAGAGGAAGATGGTGGGTTCGAATT
TGAACCCAAGACAGTGCGAGGGAGCGTTCAAGGGGCTGAGCACGGAGCCT
CCGAGCGGGGACTGGACCGGAGCAGATCGGATCGGGACGACCTCGAAGAA
ACGCGAGGCATGCTGTGGACCGAGAGGCCAGACCACCTTCTCGGAGACTT
GCAGCGTGCTGTCGACGAGGGCAGCGCGGCAGGCGCACTCGTTCAACGAA
AGTTTCGCCGCCCTCTTTCTCCGCCTTTACCTCCACCCACCCGTTGGGCA
GAGGAGGAGGAGGAGGCAGGGTGGAGGGCCCTTCTCGACATCGAGGAGCG
GGTGCAACGTATGATGGACAGCCTACAGGAGCACATTTCCTCCCCTTCCT
CCCTCCCCATGCCGCCAGGCCCTGGCCCTTCCCGTTCCGATCCGCTCGTC
TCCTCCCCTCGGCCACGCGAGTCGTCGTGGTCCCAGCCCATCTCCTTTCC
TTCCCCTCCCTTGTCGCCTCCGCCCCATGGCAGCCAGACCACCACAGCCT
CCAGTCAAAGCCAGGGCGCCCGCCCCACCCCCTCTTCTCGTCCTGGTATC
AAGAGCACGCCCGTGGAGGATTCCTCCCGACCGGGCGCCCGGTCCACACA
ATCCCGCAGAGCCACGCCCCCCCCTCCAGACCCTCTTCGCCCTGCATTCC
CTTGTCTCTCGGACATTTCCCGCCCAAGTTTTGTTTCAGGGACAGGACGT
CGACTTCGCCGGCAACGGCTGGATGCACGTTTGGGGGAATTGAACGCGTC
GATCCAAAATATCATGGAGGAGTTAAGGTGCCTAGGGAAAGGAGAAAGGG
GGCAGGGAAGGAGAGAAGAGCAGTGGGAGGAAGAGCGGAGGAAAGTTTTA
GAAGCGAGGAGAGCCGCCTACGCCTTTGGAAGTGGCGTCATGTGA
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Synonyms
Publications