rna4598, rna4598 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4598
Unique Name	rna4598
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2554
Alignment location	CM002463.1:999860..1001894 +

Link to JBrowse

Properties


Property Name	Value
Product	Uncharacterized protein family Cys-rich
Orig transcript id	gnl\|cribi\|Naga_100014g77.9269.mrna
Orig protein id	gnl\|cribi\|Naga_100014g77.9269
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:999860..1001894 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100014g77	gene4436	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4598	rna4598-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26092.1	cds4586	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:999860..1001894+
coding sequence from alignment at CM002463.1:999860..1001894+

mRNA sequence

>rna4598 ID=rna4598|Name=rna4598|organism=Nannochloropsis gaditana|type=mRNA|length=2554bp
CAGTGCCACCTATCAGCAGTGCACTCTCTCGCTCCTCGCCTTTCAGTCCT
TGCTCATTTGGCCTTCAGGAACCTATTAGGAGCATTCTGTGACCCTAACA
CATCCTATAAATGTATATATGCCAATCGCACTTTATTTGCAGTTTATTCG
CACTGCGACGTATCCACTCGCACTTTTGATTCCACTTCGATTTTCCAAGT
GCTTTCTTTTCCTGCTGCACGGTCCACTAAGGGAAGCTAGCGTGCGGTAC
TTTGAGTTCTTTCCTCCCTTTTACCACTCAGTAGGCCAACGGAGCTTGAC
TCATAGGAAAGCACTGTCCGTACGGCTTCGTTTGGGCTCGAGCACCTCCG
ACCCAATTTCGTCGTATCTTGAAGCAATCGGCTGTCGCCCCTATCGTCCC
TCTTTTGCCGAACAAGTGCTACATTTCTCTCTCATTCACCGAGGAACTTT
GCATGCATTGCGCCTTTCTTGGCAGTCTCTTGCTCATCCAGCTAATAATA
CTGTTGACGAGCAAGAAGTGTGCCATTTACGCCTCTCATCCTCAAGAGGC
GTGTAGTTCAACCACAAGCAGCATCTCCTCTGCCGTCAATAATCGCAAAG
CCACCAGCAACATGTCGAGCACTAATGTCGTCGGGAATAATGGCGGAGGT
GGCGGGAACGTAGCGTTGGGTTGGGATCTCTTGCGCGACCCTTTCCGTAA
CAAGGGACTGGCTTCGTCCGCGGAAGAGCGAGAGGAACACCACACGCGCG
GACTTTTGCCCGCAGGGATCGTGCCTCTGGAGGTGCAGGTCGCGACGGCC
TTGAAACAGGTGAGAGATCGGCCAACCCCTATGGACAAGTTTCTATTCTT
GGACCATGTGAGAGACGCCAACGTGCAGCTTTTCTATGCCCTGCTCATCG
CGCACGTGGAGGAGCTCCTGCCCTACGTGTACACTCCCACTGTCGGGGCT
GCTTGTCTGGCTTTCTCCCACATCTTCGCCCCCCGCCCCAAGGGCCTATT
CCTCTCCCTGTCCGATAAAGGTCGCCTCTTTTCGATTCTGAAAGCCTGGC
CGTGTAAGTCCATCAAGGTCATCGTCTTCTCCGACGGCGAGAGAATCTTG
GGTCTCGGAGATTTGGGTGCGAACGGTATGGGCATCCCCATCGGGAAAGC
AGCGCTCTACACGGCCTTGGGTGGGGTACGGCCTGAGGAATGTCTCGGAG
TGCTGCTGGATGTGGGCACAAACACGGAGAGCATTCGCGAGGATCCCGCC
TACATCGGCTTGCGGAGGCCGAGGGAGAGGGGCCAGGCCTACGAGGACTT
CGTGGAGGAGTTCATGCGGGCGGCGCAGCAGCTTTATGGCGACGGCGTTT
TGCTCCAATTCGAAGACTTTGGGAATGCAAATGCCTTCAGCCTGCTGGAA
CGGTGGGAGAACGAAGCTTGCTCCTTCAACGATGACATCCAGGGCACTGC
CGCAGTCGCTCTAGCTGGTTTGTTGGCTGCCAAAAGGATCACTGGACGCA
CTTCTCTTGCTGAAGAGACATATCTGTTTCTGGGCGCGGGGGAAGCGGCA
CTTGGCATTGCAGACCTGATCGCTTTTGCAATCACCGAGGAGACAGGGAT
GGCTTTGGAGGAGGCTCGGAAAAGAATTTGGCTTTTCGACTCCAAGGGCT
TGATTGTCGAAGGGCGGGACCACATCACACAGCATAAATTGCGCTACGCG
CATAGAGGTCGGACGAATTATAAGACTTTCATCGAGGCCGTGCGTGCCAT
CCGACCCACAGGGATCATTGGTGTCTCGACAATCGCCAACGCCTTCGACA
AAGCTGTGCTGGAGTGCATGGCTGTGATCAATACTCAACCTCTGGTATTC
GCTCTCTCTAATCCCACCTCTAAATCCGAGTGTACATTCGAAGACGCGGT
GATCCACACCAAAGGCAAAGTCATCTTCGCCTCTGGCTCCCCGTTTCCCC
CCTTGGAGTTCGACGGGAAAACTTTGATACCGGGACAGAGCAACAACGCC
TACATCTTTGGAGCCCTGGGTTTGGCTGTGAGTCTCACCAAGATGCGTCG
TGTCACGATGGAGCACTTCTATTTGGCTGCGAATACGGTTGCGAGCATGA
CAAGTGAAGCACAGTTGGACCAGGGATGTTTATTCCCATCCTTGAGGGAA
GTGCGACATGTTTCTGCTGCTATTGCTGCAGCAATTGCAGAAATTGAGAG
AAAGGAAGGTAGACTTCTTGTGCCAGATCAGAAAGATTGGGTCGCGTACG
CAAAAGCGGCCATGTATGACCCTTGGAAGGAATGAGTAAAGAGTCCAAGG
GGTGCAACAATTTGGAAAGTGGGGAATGAGAGAAGATTTGTTTGTGATCT
ATTGGAATAGTACTTTGCTGGCTAACCACGTCGTATGTATGTGTCATCTA
GGAGTACGACCCTGAAATGAAAGAAATACAAGATCTCAAAATTACACCCG
ACCCCGCCACCATATGCGAACGTATGTACACACTGTAATGTACATATCGC
GGTACACATACACGATGCTGCTTATGCAAATGAGACTTCACTTACTCTGG
GGAC

protein sequence of rna4598

>rna4598-protein ID=rna4598-protein|Name=rna4598|organism=Nannochloropsis gaditana|type=polypeptide|length=221bp
MLHLGGFVTIVGSYFSFLVPFPSCSHLPPQAVRSFGSGFELVELHHIPGH
CPPFMSQTSPTVVVMDLESRKGRESREGHDCNASSASSCSGDKELPPEDA
WRDGLFDCFSGFGVISCFATSYAQTHAMQELNSHTSLQRICLLTFVTTLW
ICVPVVLFFQLYALSSAIFAVSWIIESIVAFELRRITRRRYSIEGSEVED
VFASLFFPSCVTAQVLRHLRG

mRNA from alignment at CM002463.1:999860..1001894+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4598 ID=rna4598|Name=rna4598|organism=Nannochloropsis gaditana|type=mRNA|length=2035bp|location=Sequence derived from alignment at CM002463.1:999860..1001894+ (Nannochloropsis gaditana)
CGACTTACTTCTGTCCGTCTGTATTGCATCCATATTGAGTATTATGTCAA
CCTGGCATGTCGCTCCATTCTGGTATCCTTTCCGCGTCCGAttatttcct
tcttgtgTTTCGTTGAAGGCGCGGCAGAGAAGTTGTAGGGAAGACCAGCT
GATTCAAGATGCACCCACTGACCTTTAATAGTTTTCCTATCCAAGACATG
GACCAAAAAGCTACGAAACTTTGCGAGGATAAAGGCGAAGATGAAAATCA
CTGTAATCTCGAAGAAGGCATGCACATGCAGCTTACTGGTAGCCCGTTAG
atgcggggggggcgaaggacgTCCCTTCATTAGATCACGGAGAAAAGTCC
AGTTCTTTTGACGGTACGTACATATTGAAAAAAGCATATGATATACGACT
TGCATCTAATCTTTTGTCGAATAAATTCACATGAATGAGTAGAACAGCGT
AGCCCTTCGTCTACTGCCTCGACAGCTTCTCTAAGTGATGGAGAAAAAGA
GTTTTATCTGGGCAAGGTTCCTCGAAAGGAGCATAAAAAGGTAAAAAATA
GCCTCACATCATAAAAGTAGATAATTGCATAAATCCTTACACATATTGTG
CAAGGCATTATAGGGAAACTCTTCGACTGCACTGCATATCTTATGGGGAG
GCTCGCTTAGCTTGAGCCGTCACAAATGATCATGCTACTATACGAGGTCC
ACAGTGTTATCTATGCTTCATCTTGGAGGTTTTGTTACAATTGTCGGTTC
TTACTTCTCGTTTCTGGttccatttccttcttgttctcacctccctcctc
aggcaGTACGATCTTTTGGCTCTGGATTCGAACTTGTGGAGTTGCATCAT
ATTCCGGGGCATTGCCCGCCTTTCATGTCCCAAACAAGTCCCACAGTAGT
AGTTATGGACCTTGAAAGCAGGAAAGGACGCGAGTCCAGGGAAGGGCACG
ACTGCAATGCCTCGTCTGCATCTTCATGCTCCGGTGACAAAGAATTACCC
CCTGAAGATGCTTGGCGAGACGGATTGTTTGACTGCTTTTCTGGCTTCGG
TATGAGATGGGATGAATCCTCCATGAATATATGTCTTTTCGCGTCAAACC
ACATCCATGCTTAGTTTTCTAGTCAACATTTTCATGAACTTTTAGGCGTC
ATTTCCTGCTTTGCGACCAGTTACGCGCAGACCCACGCAATGCAGGAGCT
TAATTCGCATACCTCTCTTCAACGCATTTGCCTCCTCACTTTTGTCACTA
CCCTATGGATCTGTGTTCCAgttgtcctcttctttcaaCTCTATGCCCTC
TCGAGTGCCATTTTTGCGGTAAGTTGGATAATCGAGTCCATTGTAGCTTT
CGAGCTGCGACGGATTACTCGACGCCGTTACAGCATAGAAGGTAGTGAAG
TAGAAGACGTTTTTGCAAGTCTATTTTTTCCAAGCTGTGTCACTGCCCAA
GTCTTGAGGCATTTGAGAGGATAAAGGGGCCTTTTCAAAAAAGGGAGCAA
GCACGGTCGATCGGTGAGGAATCATGGACATGATCGGATCTGATGCGGGT
CTTCATAGAAAGAGTGTCTATATATATTGTGACCAGTATACAATGACTAC
ATGGTGTGCAACCACTTAGGAAAAAAGACCTCAATCACATCGAAAGGTGT
AGGCTGCAAAATGTGAAGGAAGGACATACAACGACACCAGGAATAACAGG
GGAAAAGTGTGGTAGTGACGCTTGCTGGATGCAACGTGTAGAAGTTCATG
TGGTTTGTCACTTTTAGCCAGGATATCATAGACATGATGCGCTTTTGAGT
GACTTTGATGTGCTGCTGATACGAGATAAATGTGAGTGGGGACGTCGACG
CGCTGCGCAATTTGCCGTGACGTGGAATGGCTAGGTATCGGAGGATCCTT
AATCTTAGGGAAGATAAAGAAAAGTTATGATCGCGGGCAAAGATAaggtt
tttaaaaaatgttaTCGTTTCTTGTACCTGTTAAGTCATAAACAACAGTT
GTCAGGGCGCTTTCCCCTTAGGCATGAATAGGCCC

Coding sequence (CDS) from alignment at CM002463.1:999860..1001894+

>rna4598 ID=rna4598|Name=rna4598|organism=Nannochloropsis gaditana|type=CDS|length=1332bp|location=Sequence derived from alignment at CM002463.1:999860..1001894+ (Nannochloropsis gaditana)
ATGCTTCATCTTGGAGGTTTTGTTACAATTGTCGGTTCTTACTTCTCGTT
TCTGGttccatttccttcttgttctcacctccctcctcaggcaGTACGAT
CTTTTGGCTCTGGATTCGAACTTGTGGAGTTGCATCATATTCCGGGGCAT
TGCCCGCCTTTCATGTCCCAAACAAGTCCCACAGTAGTAGTTATGGACCT
TGAAAGCAGGAAAGGACGCGAGTCCAGGGAAGGGCACGACTGCAATGCCT
CGTCTGCATCTTCATGCTCCGGTGACAAAGAATTACCCCCTGAAGATGCT
TGGCGAGACGGATTGTTTGACTGCTTTTCTGGCTTCGGCGTCATTTCCTG
CTTTGCGACCAGTTACGCGCAGACCCACGCAATGCAGGAGCTTAATTCGC
ATACCTCTCTTCAACGCATTTGCCTCCTCACTTTTGTCACTACCCTATGG
ATCTGTGTTCCAgttgtcctcttctttcaaCTCTATGCCCTCTCGAGTGC
CATTTTTGCGGTAAGTTGGATAATCGAGTCCATTGTAGCTTTCGAGCTGC
GACGGATTACTCGACGCCGTTACAGCATAGAAGGTAGTGAAGTAGAAGAC
GTTTTTGCAAGTCTATTTTTTCCAAGCTGTGTCACTGCCCAAGTCTTGAG
GCATTTGAGAGGATAAATGCTTCATCTTGGAGGTTTTGTTACAATTGTCG
GTTCTTACTTCTCGTTTCTGGttccatttccttcttgttctcacctccct
cctcaggcaGTACGATCTTTTGGCTCTGGATTCGAACTTGTGGAGTTGCA
TCATATTCCGGGGCATTGCCCGCCTTTCATGTCCCAAACAAGTCCCACAG
TAGTAGTTATGGACCTTGAAAGCAGGAAAGGACGCGAGTCCAGGGAAGGG
CACGACTGCAATGCCTCGTCTGCATCTTCATGCTCCGGTGACAAAGAATT
ACCCCCTGAAGATGCTTGGCGAGACGGATTGTTTGACTGCTTTTCTGGCT
TCGGCGTCATTTCCTGCTTTGCGACCAGTTACGCGCAGACCCACGCAATG
CAGGAGCTTAATTCGCATACCTCTCTTCAACGCATTTGCCTCCTCACTTT
TGTCACTACCCTATGGATCTGTGTTCCAgttgtcctcttctttcaaCTCT
ATGCCCTCTCGAGTGCCATTTTTGCGGTAAGTTGGATAATCGAGTCCATT
GTAGCTTTCGAGCTGCGACGGATTACTCGACGCCGTTACAGCATAGAAGG
TAGTGAAGTAGAAGACGTTTTTGCAAGTCTATTTTTTCCAAGCTGTGTCA
CTGCCCAAGTCTTGAGGCATTTGAGAGGATAA

Synonyms

Publications