rna4597, rna4597 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4597
Unique Name	rna4597
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	327
Alignment location	CM002463.1:996632..999519 +

Link to JBrowse

Properties


Property Name	Value
Product	nadp-dependent malic enzyme
Orig transcript id	gnl\|cribi\|Naga_100014g76.9272.mrna
Orig protein id	gnl\|cribi\|Naga_100014g76.9272
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:996632..999519 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100014g76	gene4435	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4597	rna4597-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26095.1	cds4585	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:996632..999519+
coding sequence from alignment at CM002463.1:996632..999519+

mRNA sequence

>rna4597 ID=rna4597|Name=rna4597|organism=Nannochloropsis gaditana|type=mRNA|length=327bp
ATGGATTATAGACACCCATTCACTCTTGGCTTCATTGAGATCCCCTCTAG
GATGGCAACACTGTCTACATCCGAAGCAATAATCTCCCATCCAAATGTAA
TCGATAAGCTGCCATCTTCGTGGGAGATTTTGTCATTCGACACCCATGTT
CTTGGGGTCAAAACAGCTAGGCTGACAGCATCTCTGCCCGGGTCGCGACT
GCAGACAATCATTGAGGAGTGCGTCGCCGAGGACACAGAGCTCCTCTATT
GGACCCCGGAATCAGGAAGCTTATCCGCTACCTACATTGAGAATGCTCCG
GGGTACGCTGTAGCGCAGATTATATAG

protein sequence of rna4597

>rna4597-protein ID=rna4597-protein|Name=rna4597|organism=Nannochloropsis gaditana|type=polypeptide|length=610bp
MHCAFLGSLLLIQLIILLTSKKCAIYASHPQEACSSTTSSISSAVNNRKA
TSNMSSTNVVGNNGGGGGNVALGWDLLRDPFRNKGLASSAEEREEHHTRG
LLPAGIVPLEVQVATALKQVRDRPTPMDKFLFLDHVRDANVQLFYALLIA
HVEELLPYVYTPTVGAACLAFSHIFAPRPKGLFLSLSDKGRLFSILKAWP
CKSIKVIVFSDGERILGLGDLGANGMGIPIGKAALYTALGGVRPEECLGV
LLDVGTNTESIREDPAYIGLRRPRERGQAYEDFVEEFMRAAQQLYGDGVL
LQFEDFGNANAFSLLERWENEACSFNDDIQGTAAVALAGLLAAKRITGRT
SLAEETYLFLGAGEAALGIADLIAFAITEETGMALEEARKRIWLFDSKGL
IVEGRDHITQHKLRYAHRGRTNYKTFIEAVRAIRPTGIIGVSTIANAFDK
AVLECMAVINTQPLVFALSNPTSKSECTFEDAVIHTKGKVIFASGSPFPP
LEFDGKTLIPGQSNNAYIFGALGLAVSLTKMRRVTMEHFYLAANTVASMT
SEAQLDQGCLFPSLREVRHVSAAIAAAIAEIERKEGRLLVPDQKDWVAYA
KAAMYDPWKE

mRNA from alignment at CM002463.1:996632..999519+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4597 ID=rna4597|Name=rna4597|organism=Nannochloropsis gaditana|type=mRNA|length=2888bp|location=Sequence derived from alignment at CM002463.1:996632..999519+ (Nannochloropsis gaditana)
CAGTGCCACCTATCAGCAGTGCactctctcgctcctcgccTTTCAGTCCT
TGCTCATTTGGCCTTCAGGAACCTATTAGGAGCATTCTGTGACCCTAACA
CATCCTATAAATGTATATATGCCAATCGCACTTTATTTGCAGTTTATTCG
CACTGCGACGTATCCACTCGCACTTTTGATTCCACTTCGATTTTCCAagt
gctttcttttcctgctgCACGGTCCACTAAGGGAAGCTAGCGTGCGGTAC
TTTGagttctttcctcccttttacCACTCAGTAGGCCAACGGAGCTTGAC
TCATAGGAAAGCACTGTCCGTACGGCTTCGTTTGGGCTCGAGCACCTCCG
ACCCAATTTCGTCGTATCTTGAAGCAATCGGCTGTCGCCCCTATCGTCCC
TCTTTTGCCGAACAAGTGCTACATTTCTCTCTCATTCACCGAGGAACTTT
GCATGCATTGCGCCTTTCTTGGCAGTCTCTTGCTCATCCAGCTAATAATA
CTGTTGACGAGCAAGAAGTGTGCCATTTACGCCTCTCATCCTCAAGAGGC
GTGTAGTTCAACCACAAGCAGCATCTCCTCTGCCGTCAATAATCGCAAAG
CCACCAGCAACATGTCGAGCACTAATGTCGTCGGGAATAatggcggaggt
ggcgggaaCGTAGCGTTGGGTTGGGATCTCTTGCGCGACCCTTTCCGTAA
CAAGGGACTGGCTTCGTCCGCGGAAGAGCGAGAGGAACACCACACGCGCG
GACTTTTGCCCGCAGGGATCGTGCCTCTGGAGGTGCAGGTCGCGACGGCC
TTGAAACAGGTGAGAGATCGGCCAACCCCTATGGACAAGTTTCTATTCTT
GGACCATGTGAGAGACGCCAACGTGCAGGTAAGGCTCCTAAGGGTTCCCG
GGAGACAagcatgccctcctctttccctctctcctgacCCCATGTGCTGG
GGGCAACGAGCCGTCCTCACCCaaatctccttcctccgtcgttCCCACAG
CTTTTCTATGCCCTGCTCATCGcgcacgtggaggagctcctgcCCTACGT
GTACACTCCCACTGTCGGGGCTGCTTGTCTGGCTTTCTCCCACAtcttcg
ccccccgccccaagGGCCtattcctctccctgtccgATAAAGGTCGCCTC
TTTTCGATTCTGAAAGCCTGGCCGTGTAAGTCCATCAAGGTCATCGTCTT
CTCCGACGGCGAGAGAATCTTGGGTCTCGGAGATTTGGGTGCGAACGGTA
TGGGCATCCCCATCGGGAAAGCAGCGCTCTACACGGCCTTGGGTGGGGTA
CGGCCTGAGGAATGTCTCGGAGTGCTGCTGGATGTGGGCACAAACACGGA
GAGCATTCGCGAGGATCCCGCCTACATCGGCTTGCggaggccgagggaga
ggggccaggcCTACGAGGACTTCGTGGAGGAGTTCATGCGGGCGGCGCAG
CAGGTAAGGGGCCAAGGGAAGATATGAGAGCGAGAGTTGGTAGGGTGAAA
TCGTCGGAATGGGCCGcgcgaggaagcagagggctTTTCCAAGGAAGTAG
gacgcctctttccctggtCGGGCTCGACTCGAGTCAAGACTCCAGCCACC
GCCGTATCGCTAGCCTGTGTCACCCAGCTGCAATCTCATCACATGTCTCT
CCTGCTTCTGTCTAGCTTTATGGCGACGGCGTTTTGCTCCAATTCGAAGA
CTTTGGGAATGCAAATGCCTTCAGCCTGCTGGAACGGTGGGAGAACGAAG
CTTGCTCCTTCAACGATGACATCCAGGGCACTGCCGCAGTCGCTCTAGCT
GGTTTGTTGGCTGCCAAAAGGATCACTGGACGCACTTCTCTTGCTGAAGA
GACATATCTGTTTCTGGGCGCGGGGGAAGCGGCACTTGGCATTGCAGACC
TGATCGCTTTTGCAATCACCGAGGAGACAGGGatggctttggaggaggct
cgGAAAAGAATTTGGCTTTTCGACTCCAAGGGCTTGATTGTCGAAGGGCG
GGACCACATCACACAGCATAAATTGCGCTACGCGCATAGAGGTCGGACGA
ATTATAAGACTTTCATCGAGGCCGTGCGTGCCATCCGACCCACAGGGATC
ATTGGTGTCTCGACAATCGCCAACGCCTTCGACAAAGCTGTGCTGGAGTG
CATGGCTGTGATCAATACTCAACCTCTGGTATTCGCTCTCTCTAATCCCA
CCTCTAAATCCGAGTGTACATTCGAAGACGCGGTGATCCACACCAAAGGC
AAAGTCATCTTCGCCTCTGGCTCCCCGTTTCCCCCCTTGGAGTTCGACGG
GAAAACTTTGATACCGGGACAGAGCAACAACGCCTACATCTTTGGAGCCC
TGGGTTTGGCTGTGAGTCTCACCAAGATGCGTCGTGTCACGATGGAGCAC
TTCTATTTGGCTGCGAATACGGTTGCGAGCATGACAAGTGAAGCACAGTT
GGACCAGGGATGTTTATTCCCATCCTTGAGGGAAGTGCGACATGTTTCTG
CTGCTATTGCTGCAGCAATTGCAGAAattgagagaaaggaaggtagACTT
CTTGTGCCAGATCAGAAAGATTGGGTCGCGTACGCAAAAGCGGCCATGTA
TGACCCTTGGAAGGAATGAGTAAAGAGTCCAAGGGGTGCAACAATTTGGA
AAGTGGGGAATGAGAGAAGATTTGTTTGTGATCTATTGGAATAGTACTTT
GCTGGCTAACCACGTCGTATGTATGTGTCATCTAGGAGTACGACCCtgaa
atgaaagaaataCAAGATCTCAAAATTACACCCGACCCCGCCACCATATG
CGAACGTATGTACACACTGTAATGTACATATCGCGGTACACATACACGAT
GCTGCTTATGCAAATGAGACTTCACTTACTCTGGGGAC

Coding sequence (CDS) from alignment at CM002463.1:996632..999519+

>rna4597 ID=rna4597|Name=rna4597|organism=Nannochloropsis gaditana|type=CDS|length=5499bp|location=Sequence derived from alignment at CM002463.1:996632..999519+ (Nannochloropsis gaditana)
ATGCATTGCGCCTTTCTTGGCAGTCTCTTGCTCATCCAGCTAATAATACT
GTTGACGAGCAAGAAGTGTGCCATTTACGCCTCTCATCCTCAAGAGGCGT
GTAGTTCAACCACAAGCAGCATCTCCTCTGCCGTCAATAATCGCAAAGCC
ACCAGCAACATGTCGAGCACTAATGTCGTCGGGAATAatggcggaggtgg
cgggaaCGTAGCGTTGGGTTGGGATCTCTTGCGCGACCCTTTCCGTAACA
AGGGACTGGCTTCGTCCGCGGAAGAGCGAGAGGAACACCACACGCGCGGA
CTTTTGCCCGCAGGGATCGTGCCTCTGGAGGTGCAGGTCGCGACGGCCTT
GAAACAGGTGAGAGATCGGCCAACCCCTATGGACAAGTTTCTATTCTTGG
ACCATGTGAGAGACGCCAACGTGCAGCTTTTCTATGCCCTGCTCATCGcg
cacgtggaggagctcctgcCCTACGTGTACACTCCCACTGTCGGGGCTGC
TTGTCTGGCTTTCTCCCACAtcttcgccccccgccccaagGGCCtattcc
tctccctgtccgATAAAGGTCGCCTCTTTTCGATTCTGAAAGCCTGGCCG
TGTAAGTCCATCAAGGTCATCGTCTTCTCCGACGGCGAGAGAATCTTGGG
TCTCGGAGATTTGGGTGCGAACGGTATGGGCATCCCCATCGGGAAAGCAG
CGCTCTACACGGCCTTGGGTGGGGTACGGCCTGAGGAATGTCTCGGAGTG
CTGCTGGATGTGGGCACAAACACGGAGAGCATTCGCGAGGATCCCGCCTA
CATCGGCTTGCggaggccgagggagaggggccaggcCTACGAGGACTTCG
TGGAGGAGTTCATGCGGGCGGCGCAGCAGCTTTATGGCGACGGCGTTTTG
CTCCAATTCGAAGACTTTGGGAATGCAAATGCCTTCAGCCTGCTGGAACG
GTGGGAGAACGAAGCTTGCTCCTTCAACGATGACATCCAGGGCACTGCCG
CAGTCGCTCTAGCTGGTTTGTTGGCTGCCAAAAGGATCACTGGACGCACT
TCTCTTGCTGAAGAGACATATCTGTTTCTGGGCGCGGGGGAAGCGGCACT
TGGCATTGCAGACCTGATCGCTTTTGCAATCACCGAGGAGACAGGGatgg
ctttggaggaggctcgGAAAAGAATTTGGCTTTTCGACTCCAAGGGCTTG
ATTGTCGAAGGGCGGGACCACATCACACAGCATAAATTGCGCTACGCGCA
TAGAGGTCGGACGAATTATAAGACTTTCATCGAGGCCGTGCGTGCCATCC
GACCCACAGGGATCATTGGTGTCTCGACAATCGCCAACGCCTTCGACAAA
GCTGTGCTGGAGTGCATGGCTGTGATCAATACTCAACCTCTGGTATTCGC
TCTCTCTAATCCCACCTCTAAATCCGAGTGTACATTCGAAGACGCGGTGA
TCCACACCAAAGGCAAAGTCATCTTCGCCTCTGGCTCCCCGTTTCCCCCC
TTGGAGTTCGACGGGAAAACTTTGATACCGGGACAGAGCAACAACGCCTA
CATCTTTGGAGCCCTGGGTTTGGCTGTGAGTCTCACCAAGATGCGTCGTG
TCACGATGGAGCACTTCTATTTGGCTGCGAATACGGTTGCGAGCATGACA
AGTGAAGCACAGTTGGACCAGGGATGTTTATTCCCATCCTTGAGGGAAGT
GCGACATGTTTCTGCTGCTATTGCTGCAGCAATTGCAGAAattgagagaa
aggaaggtagACTTCTTGTGCCAGATCAGAAAGATTGGGTCGCGTACGCA
AAAGCGGCCATGTATGACCCTTGGAAGGAATGAATGCATTGCGCCTTTCT
TGGCAGTCTCTTGCTCATCCAGCTAATAATACTGTTGACGAGCAAGAAGT
GTGCCATTTACGCCTCTCATCCTCAAGAGGCGTGTAGTTCAACCACAAGC
AGCATCTCCTCTGCCGTCAATAATCGCAAAGCCACCAGCAACATGTCGAG
CACTAATGTCGTCGGGAATAatggcggaggtggcgggaaCGTAGCGTTGG
GTTGGGATCTCTTGCGCGACCCTTTCCGTAACAAGGGACTGGCTTCGTCC
GCGGAAGAGCGAGAGGAACACCACACGCGCGGACTTTTGCCCGCAGGGAT
CGTGCCTCTGGAGGTGCAGGTCGCGACGGCCTTGAAACAGGTGAGAGATC
GGCCAACCCCTATGGACAAGTTTCTATTCTTGGACCATGTGAGAGACGCC
AACGTGCAGCTTTTCTATGCCCTGCTCATCGcgcacgtggaggagctcct
gcCCTACGTGTACACTCCCACTGTCGGGGCTGCTTGTCTGGCTTTCTCCC
ACAtcttcgccccccgccccaagGGCCtattcctctccctgtccgATAAA
GGTCGCCTCTTTTCGATTCTGAAAGCCTGGCCGTGTAAGTCCATCAAGGT
CATCGTCTTCTCCGACGGCGAGAGAATCTTGGGTCTCGGAGATTTGGGTG
CGAACGGTATGGGCATCCCCATCGGGAAAGCAGCGCTCTACACGGCCTTG
GGTGGGGTACGGCCTGAGGAATGTCTCGGAGTGCTGCTGGATGTGGGCAC
AAACACGGAGAGCATTCGCGAGGATCCCGCCTACATCGGCTTGCggaggc
cgagggagaggggccaggcCTACGAGGACTTCGTGGAGGAGTTCATGCGG
GCGGCGCAGCAGCTTTATGGCGACGGCGTTTTGCTCCAATTCGAAGACTT
TGGGAATGCAAATGCCTTCAGCCTGCTGGAACGGTGGGAGAACGAAGCTT
GCTCCTTCAACGATGACATCCAGGGCACTGCCGCAGTCGCTCTAGCTGGT
TTGTTGGCTGCCAAAAGGATCACTGGACGCACTTCTCTTGCTGAAGAGAC
ATATCTGTTTCTGGGCGCGGGGGAAGCGGCACTTGGCATTGCAGACCTGA
TCGCTTTTGCAATCACCGAGGAGACAGGGatggctttggaggaggctcgG
AAAAGAATTTGGCTTTTCGACTCCAAGGGCTTGATTGTCGAAGGGCGGGA
CCACATCACACAGCATAAATTGCGCTACGCGCATAGAGGTCGGACGAATT
ATAAGACTTTCATCGAGGCCGTGCGTGCCATCCGACCCACAGGGATCATT
GGTGTCTCGACAATCGCCAACGCCTTCGACAAAGCTGTGCTGGAGTGCAT
GGCTGTGATCAATACTCAACCTCTGGTATTCGCTCTCTCTAATCCCACCT
CTAAATCCGAGTGTACATTCGAAGACGCGGTGATCCACACCAAAGGCAAA
GTCATCTTCGCCTCTGGCTCCCCGTTTCCCCCCTTGGAGTTCGACGGGAA
AACTTTGATACCGGGACAGAGCAACAACGCCTACATCTTTGGAGCCCTGG
GTTTGGCTGTGAGTCTCACCAAGATGCGTCGTGTCACGATGGAGCACTTC
TATTTGGCTGCGAATACGGTTGCGAGCATGACAAGTGAAGCACAGTTGGA
CCAGGGATGTTTATTCCCATCCTTGAGGGAAGTGCGACATGTTTCTGCTG
CTATTGCTGCAGCAATTGCAGAAattgagagaaaggaaggtagACTTCTT
GTGCCAGATCAGAAAGATTGGGTCGCGTACGCAAAAGCGGCCATGTATGA
CCCTTGGAAGGAATGAATGCATTGCGCCTTTCTTGGCAGTCTCTTGCTCA
TCCAGCTAATAATACTGTTGACGAGCAAGAAGTGTGCCATTTACGCCTCT
CATCCTCAAGAGGCGTGTAGTTCAACCACAAGCAGCATCTCCTCTGCCGT
CAATAATCGCAAAGCCACCAGCAACATGTCGAGCACTAATGTCGTCGGGA
ATAatggcggaggtggcgggaaCGTAGCGTTGGGTTGGGATCTCTTGCGC
GACCCTTTCCGTAACAAGGGACTGGCTTCGTCCGCGGAAGAGCGAGAGGA
ACACCACACGCGCGGACTTTTGCCCGCAGGGATCGTGCCTCTGGAGGTGC
AGGTCGCGACGGCCTTGAAACAGGTGAGAGATCGGCCAACCCCTATGGAC
AAGTTTCTATTCTTGGACCATGTGAGAGACGCCAACGTGCAGCTTTTCTA
TGCCCTGCTCATCGcgcacgtggaggagctcctgcCCTACGTGTACACTC
CCACTGTCGGGGCTGCTTGTCTGGCTTTCTCCCACAtcttcgccccccgc
cccaagGGCCtattcctctccctgtccgATAAAGGTCGCCTCTTTTCGAT
TCTGAAAGCCTGGCCGTGTAAGTCCATCAAGGTCATCGTCTTCTCCGACG
GCGAGAGAATCTTGGGTCTCGGAGATTTGGGTGCGAACGGTATGGGCATC
CCCATCGGGAAAGCAGCGCTCTACACGGCCTTGGGTGGGGTACGGCCTGA
GGAATGTCTCGGAGTGCTGCTGGATGTGGGCACAAACACGGAGAGCATTC
GCGAGGATCCCGCCTACATCGGCTTGCggaggccgagggagaggggccag
gcCTACGAGGACTTCGTGGAGGAGTTCATGCGGGCGGCGCAGCAGCTTTA
TGGCGACGGCGTTTTGCTCCAATTCGAAGACTTTGGGAATGCAAATGCCT
TCAGCCTGCTGGAACGGTGGGAGAACGAAGCTTGCTCCTTCAACGATGAC
ATCCAGGGCACTGCCGCAGTCGCTCTAGCTGGTTTGTTGGCTGCCAAAAG
GATCACTGGACGCACTTCTCTTGCTGAAGAGACATATCTGTTTCTGGGCG
CGGGGGAAGCGGCACTTGGCATTGCAGACCTGATCGCTTTTGCAATCACC
GAGGAGACAGGGatggctttggaggaggctcgGAAAAGAATTTGGCTTTT
CGACTCCAAGGGCTTGATTGTCGAAGGGCGGGACCACATCACACAGCATA
AATTGCGCTACGCGCATAGAGGTCGGACGAATTATAAGACTTTCATCGAG
GCCGTGCGTGCCATCCGACCCACAGGGATCATTGGTGTCTCGACAATCGC
CAACGCCTTCGACAAAGCTGTGCTGGAGTGCATGGCTGTGATCAATACTC
AACCTCTGGTATTCGCTCTCTCTAATCCCACCTCTAAATCCGAGTGTACA
TTCGAAGACGCGGTGATCCACACCAAAGGCAAAGTCATCTTCGCCTCTGG
CTCCCCGTTTCCCCCCTTGGAGTTCGACGGGAAAACTTTGATACCGGGAC
AGAGCAACAACGCCTACATCTTTGGAGCCCTGGGTTTGGCTGTGAGTCTC
ACCAAGATGCGTCGTGTCACGATGGAGCACTTCTATTTGGCTGCGAATAC
GGTTGCGAGCATGACAAGTGAAGCACAGTTGGACCAGGGATGTTTATTCC
CATCCTTGAGGGAAGTGCGACATGTTTCTGCTGCTATTGCTGCAGCAATT
GCAGAAattgagagaaaggaaggtagACTTCTTGTGCCAGATCAGAAAGA
TTGGGTCGCGTACGCAAAAGCGGCCATGTATGACCCTTGGAAGGAATGA

Synonyms

Publications