rna4596, rna4596 (mRNA) Nannochloropsis gaditana

Overview
Namerna4596
Unique Namerna4596
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length609
Alignment locationCM002463.1:996030..996356 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100014g75.9284.mrna
Orig protein idgnl|cribi|Naga_100014g75.9284
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:996030..996356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100014g75gene4434Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26107.1cds4584Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4596rna4596-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4596 ID=rna4596|Name=rna4596|organism=Nannochloropsis gaditana|type=mRNA|length=609bp
ATGTCAACTTGTCAGCCCTGGTCCCTTTTTCGCCCAAAAATCGATCGAAA
AAGCCCGAACGCTTCGTGGCTTCTTCGTGCGCTTATCATTCTCCCCGTCT
TCTTGCCCTTTAAATACAATCAAAGCTTTAATATCAAAGCACAGAAGGAT
TGGAATGTGGTCATCCTTAGGCAAGCGTATGTCACCACTGATGTGGCGGC
TAGGAAGCAGGCATTCTCATCTTGCAGTGGCACAGCAAGGCCAAATGCAC
AATGCAGGATATCTGAGTTGTGCAGTGACGCCGCCTCCGCTAACCAGTCT
GAGGCCGAAATTGTCGTCGAAAAAATCAGGGAGCTCAGCCTGCGGAAGAC
AAAGGGTATGAAGAGTCTCACGGCGGCCATGTGGAGGCTTTCATTCCTCT
ACAAGCCCTTCTACAAGCAGGTTGCCGCCCAGGCGGAAACACACATCGTC
GTCCTCCTCCTCCTTCTGCATAGCCTCCCAGGCCTCAGGGTGTCGCTTCG
AGTGCCTCTCCGACTTCTACGCGGTGGCAGACTCAATCAAGAACTCGTTC
AAGCCGCTGCGGTGACCCTGGACCACGCAATCACCCAGCTTAAGCAGGCG
GGATGCTAA
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protein sequence of rna4596

>rna4596-protein ID=rna4596-protein|Name=rna4596|organism=Nannochloropsis gaditana|type=polypeptide|length=108bp
MDYRHPFTLGFIEIPSRMATLSTSEAIISHPNVIDKLPSSWEILSFDTHV
LGVKTARLTASLPGSRLQTIIEECVAEDTELLYWTPESGSLSATYIENAP
GYAVAQII
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mRNA from alignment at CM002463.1:996030..996356-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4596 ID=rna4596|Name=rna4596|organism=Nannochloropsis gaditana|type=mRNA|length=327bp|location=Sequence derived from alignment at CM002463.1:996030..996356- (Nannochloropsis gaditana)
ATGGATTATAGACACCCATTCACTCTTGGCTTCATTGAGATCCCCTCTAG
GATGGCAACACTGTCTACATCCGAAGCAATAATCTCCCATCCAAATGTAA
TCGATAAGCTGCCATCTTCGTGGGAGATTTTGTCATTCGACACCCATGTT
CTTGGGGTCAAAACAGCTAGGCTGACAGCATCTCTGCCCGGGTCGCGACT
GCAGACAATCATTGAGGAGTGCGTCGCCGAGGACACAGAGCTCCTCTATT
GGACCCCGGAATCAGGAAGCTTATCCGCTACCTACATTGAGAATGCTCCG
GGGTACGCTGTAGCGCAGATTATATAG
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Coding sequence (CDS) from alignment at CM002463.1:996030..996356-

>rna4596 ID=rna4596|Name=rna4596|organism=Nannochloropsis gaditana|type=CDS|length=327bp|location=Sequence derived from alignment at CM002463.1:996030..996356- (Nannochloropsis gaditana)
ATGGATTATAGACACCCATTCACTCTTGGCTTCATTGAGATCCCCTCTAG
GATGGCAACACTGTCTACATCCGAAGCAATAATCTCCCATCCAAATGTAA
TCGATAAGCTGCCATCTTCGTGGGAGATTTTGTCATTCGACACCCATGTT
CTTGGGGTCAAAACAGCTAGGCTGACAGCATCTCTGCCCGGGTCGCGACT
GCAGACAATCATTGAGGAGTGCGTCGCCGAGGACACAGAGCTCCTCTATT
GGACCCCGGAATCAGGAAGCTTATCCGCTACCTACATTGAGAATGCTCCG
GGGTACGCTGTAGCGCAGATTATATAG
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Synonyms
Publications