rna4590, rna4590 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4590
Unique Name	rna4590
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2995
Alignment location	CM002463.1:979876..981947 -

Link to JBrowse

Properties


Property Name	Value
Product	abc transporter atp-binding protein
Orig transcript id	gnl\|cribi\|Naga_100014g68.9255.mrna
Orig protein id	gnl\|cribi\|Naga_100014g68.9255
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:979876..981947 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100014g68	gene4428	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26078.1	cds4578	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4590	rna4590-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:979876..981947-
coding sequence from alignment at CM002463.1:979876..981947-

mRNA sequence

>rna4590 ID=rna4590|Name=rna4590|organism=Nannochloropsis gaditana|type=mRNA|length=2995bp
TTGGCTTGTCCACGACTTCTCGACCTTACGATTGCTCTCATTTTCCCGGA
AGGGTCATCATCAGGCGCCTGACTCTCCATCGGCCAGTCTACGCGCGCTT
TAGGATGAGCCCGCACCACGCACCCCCCTTCAACCTACAACTTTACTATG
GAGCCCGCCGGGTCGTGCCAGCCATCGTTGCTTTGCTTTGTCTCATCCGC
CTTACCCAAGCCTTTCTTGCCTTTCCGTATCAGGGGGGCAAGCATTCGCA
AGTGGTATTTGTTCGGAAGCCCTTCCTCCTCGTCAGTAATGATGGACTGG
ATAGCCAAAGCGTCGACGAAGCGATCATGAAATCCGCCATGGCTGCCATT
CAAGAGGATAAAGCGCAAAGGCAACAAAAGAAGCAAGAGCAAGACAGTAT
ACAGGATGAAGGACCCAGAAATTTACGTGATTTCTATAGCGTAGAGGCAG
CGGTTGAGGAGATGGCTGAGGCGGAGGAGCGGTATGTGCAGGCCCGGGCT
CGGCGGGAGCGATTTCTAATGGAGGCGCAGGCTAACTTTAGGAAATTGGC
AGAAAGGGCCGATGAAGAATTACAGGCTTTTGTTGCTGAGGAGGAGGCTG
CGGCACAGGACTTGGAGAGAAGAGCGAAGGAGGTGAGAGAGGTGAAAGAG
GAAGTATCGGTCTTGGTGAAGGAGGCGGACGAGCTACGAGCTGGAGGCAA
GGGCCTCCTTGCCTCCGTCGACCTCGTGTTGGCCTTATCAATCCTGGTGG
TTCTGGATACCTTTTATGTGAGCTACTTGACTTATCGCGGCAGCGACCTT
GTGAGCTCCTCGCTGGCCACGGAGGCTCTTTTGGGAGGCGTCTTGTTCTT
CAAGATCAAGCAACGAGAGGCAGCCCAACTGGATAAAGAGAAAAGTAGAC
CTGACGATGGAAGCAACGAGAGGAGAAATTTGCGAAATGGGTCATAAAAG
AAGAGACTGAATTTATATGTGTGAATGGATAAAGGTGCTACGAAGAATAG
CGTGGTGATCAAAATACAATGGAGGCTATTTCCGCAAAGCAATCGAATAA
CAAATCTTCGTGGCCCGCTTGCCGACTTGGTACTACTGTGAACAGACACC
GACGACCTGACGTTTCTCTCGCTGGCTGAATATGATGGAGGAAAGATGTC
ATATCTTTCGTTGGAGGCATTCACTCCATGCACTGCGCGTTCAGGCTCAA
CCTTTTCACCCTTTAAGTCGCTTCCTCTTCTTGCCCCTTCTTTCGGCCTC
GCTGCGCCCTGTGCGCGACGTACTCCGTATAGTTCCCCGCGAACATTTTC
ACCGAACCAGCGCCCTCGAAAGCGAGGGTATGGGTACAGACGCGGTCCAG
GAACCAGCGGTCGTGCGAGATGACGACCGAGCAGCCGGGGAACTCCCGCA
GAGCCTCCTCCAGCGCCCGCAGCGTCTGCACGTCAAGATCGTTCGAGGGC
TCGTCCAGGAATAAGAGGTTGTGCCGACGTTTCATCACCTTGGCAAGGTG
CACGCGGTTCCGTTCCCCCCCGCTGAGAGAGCCGACGAGCTTCTCCTGCA
TGGAACCCTTCAGGTTGAAGGCCGCCAGGTAGGCGCGAGTGTGGACCGTT
CGACCCTCGAGAACGATCACGTCCTCGGATTGCGCCACCTCCTCATAGAC
GCTCTTCCTGTCGTCGAGCTCCTGGTCGCGGACCTGGGAGACCAGGCCCA
AGCTCACGGTTGAGCCTATCTGCACGGACCCGGCGTCTGGCTCCGCCCGC
CCGCACAACACGTTGAACAAGGTGCTCTTTCCGCAGCCGTTCGCTCCGAT
TACCCCCACAATCGCGCCCGCCTCCAAATCGAATGACACGTTGTCAAACA
GAACCTTGCTCGAGACGCGCTTGCTCAAATTTTCCACCGTCATGACACGA
TCGCCCAGCCGAGGTCCCGGCGGGATGACAATTTTGCCCGTTTCCAACTG
GTGAATCTTATCCGCAAGACCCTGCTGCTCAATTCGGCGCACCTCCACCG
CCTTTACTCTGGCCTTACTCGCCTGCTTCGACCGCAGACGGATCCACTCG
AGCTCTGCCTGCAGAGCGCGAGCCTGTGCTGCCTCTTTTCCTCGCTCCAG
GTCCAGACGAGCGGCTTTGTGCTCCAGCCACTGTGTGTAGTTGCCTTGGA
AGGGAAGGAGCGACCCTCGATCTACCTCCAGCACCCACCGGGCAATATTG
TCTAGGAAGTATCGATCGTGCGTAACCGCGATAACCGTCCCTCTGTACTC
TTGCAGAAACCTCTCCAGCCAGGCCACCGAGTCCGCATCCAGGTGGTTCG
TGGGCTCGTCCAGAAGCAACACGTCCGGTTGTTCCAATAACATGCGGCAT
AGAGCTACGCGTCTCCGCTCTCCTCCTGATAAAGATATAATGGAAGCGTC
TGGTGGAGGTAAGTGTAGAGCTTTCATCACAGTATCAACGCGGTGCTCCA
CATTCCAGCAATCCAAAGCCTCGATCCGCCCTTGCAACTCGGCCTGCTCC
TCCAACAGCTTATCAAGATCCGCATCCGTTTCCCCCATTTTCATCGCAAT
TTCGTCAAATTTCTGCACTAGCGCCTCTTGCTCCGCGATGCCCAATCTCA
CGTTTCCTTTCACATCAAGCGCAGGGTCGAGCTGTGGCTCTTGCGCAAGG
TACATAAACTTTACATCTGGCTTCCGCCATACCACCCCGTGATGCTCCTG
GTCCACGCCACTGATTATTTTTAATAGAGATGACTTCCCAGAGCCATTCA
CGCCCAAGACACCGATTTTTGCCCCCCGGAAAAAGGATAGCCTTGTGTCT
TTCAGGAGCACGCGGCCTCCAGGTAAAACTTTCGTCACGTCAGACAAACT
ACAAATGATTTCTCCTGTCGATGGCGCATTGGAGGGATTAGAGCCGCCTC
CTTGGCAAGAGTATAGCCGATATCGATGTTGAAGCCCTAACCTGGGTAAT
GCAAGCCGTAGTTTTGCAAGACGTTGAAGTATTGGGGGCATCGGG

protein sequence of rna4590

>rna4590-protein ID=rna4590-protein|Name=rna4590|organism=Nannochloropsis gaditana|type=polypeptide|length=592bp
MPPILQRLAKLRLALPRLGLQHRYRLYSCQGGGSNPSNAPSTGEIICSLS
DVTKVLPGGRVLLKDTRLSFFRGAKIGVLGVNGSGKSSLLKIISGVDQEH
HGVVWRKPDVKFMYLAQEPQLDPALDVKGNVRLGIAEQEALVQKFDEIAM
KMGETDADLDKLLEEQAELQGRIEALDCWNVEHRVDTVMKALHLPPPDAS
IISLSGGERRRVALCRMLLEQPDVLLLDEPTNHLDADSVAWLERFLQEYR
GTVIAVTHDRYFLDNIARWVLEVDRGSLLPFQGNYTQWLEHKAARLDLER
GKEAAQARALQAELEWIRLRSKQASKARVKAVEVRRIEQQGLADKIHQLE
TGKIVIPPGPRLGDRVMTVENLSKRVSSKVLFDNVSFDLEAGAIVGVIGA
NGCGKSTLFNVLCGRAEPDAGSVQIGSTVSLGLVSQVRDQELDDRKSVYE
EVAQSEDVIVLEGRTVHTRAYLAAFNLKGSMQEKLVGSLSGGERNRVHLA
KVMKRRHNLLFLDEPSNDLDVQTLRALEEALREFPGCSVVISHDRWFLDR
VCTHTLAFEGAGSVKMFAGNYTEYVAHRAQRGRKKGQEEEAT

mRNA from alignment at CM002463.1:979876..981947-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4590 ID=rna4590|Name=rna4590|organism=Nannochloropsis gaditana|type=mRNA|length=2072bp|location=Sequence derived from alignment at CM002463.1:979876..981947- (Nannochloropsis gaditana)
AGGAGCTACAGCCCCGATGCCCCCAATACTTCAACGTCTTGCAAAACTAC
GGCTTGCATTACCCAGGTTAGGGCTTCAACATCGATATCGGCTATACTCT
TGCCAAGGAGGCGGCTCTAATCCCTCCAATGCGCCATCGACAGGAGAAAT
CATTTGTAGTTTGTCTGACGTGACGAAAGTTTTACCTGGAGGCCGCGTGC
TCCTGAAAGACACAAGGCTATCCTTTTTCCGGGGGGCAAAAATCGGTGTC
TTGGGCGTGAATGGCTCTGGGAAGTCATCTCTATTAAAAATAATCAGTGG
CGTGGACCAGGAGCATCACGGGGTGGTATGGCGGAAGCCAGATGTAAAGT
TTATGTACCTTGCGCAAGAGCCACAGCTCGACCCTGCGCTTGATGTGAAA
GGAAACGTGAGATTGGGCATCGCGGAGCAAGAGGCGCTAGTGCAGAAATT
TGACGAAATTGCGATGAAAATGGGGGAAACGGATGCGGATCTTGATAAGC
TGTTGGAGGAGCAGGCCGAGTTGCAAGGGCGGATCGAGGCTTTGGATTGC
TGGAATGTGGAGCACCGCGTTGATACTGTGATGAAAGCTCTACACTTACC
TCCACCAGACGCTTCCATTATATCTTTATCAGGAGGAGAGCGGAGACGCG
TAGCTCTATGCCGCATGTTATTGGAACAACCGGACGTGTTGCTTCTGGAC
GAGCCCACGAACCACCTGGATGCGGACTCGGTGGCCTGGCTGGAGAGGTT
TCTGCAAGAGTACAGAGGGACGGTTATCGCGGTTACGCACGATCGATACT
TCCTAGACAATATTGCCCGGTGGGTGCTGGAGGTAGATCGAGGGTCGCTC
CTTCCCTTCCAAGGCAACTACACACAGTGGCTGGAGCACAAAGCCGCTCG
TCTGGACCTGGAGCGAGGAAAAGAGGCAGCACAGGCTCGCGCTCTGCAGG
CAGAGCTCGAGTGGATCCGTCTGCGGTCGAAGCAGGCGAGTAAGGCCAGA
GTAAAGGCGGTGGAGGTGCGCCGAATTGAGCAGCAGGGTCTTGCGGATAA
GATTCACCAGTTGGAAACGGGCAAAATTGTCATCCCGCCGGGACCTCGGC
TGGGCGATCGTGTCATGACGGTGGAAAATTTGAGCAAGCGCGTCTCGAGC
AAGGTTCTGTTTGACAACGTGTCATTCGATTTGGAGGCGGGCGCGATTGT
GGGGGTAATCGGAGCGAACGGCTGCGGAAAGAGCACCTTGTTCAACGTGT
TGTGCGGGCGGGCGGAGCCAGACGCCGGGTCCGTGCAGATAGGCTCAACC
GTGAGCTTGGGCCTGGTCTCCCAGGTCCGCGACCAGGAGCTCGACGACAG
GAAGAGCGTCTATGAGGAGGTGGCGCAATCCGAGGACGTGATCGTTCTCG
AGGGTCGAACGGTCCACACTCGCGCCTACCTGGCGGCCTTCAACCTGAAG
GGTTCCATGCAGGAGAAGCTCGTCGGCTCTCTCAGCGGGGGGGAACGGAA
CCGCGTGCACCTTGCCAAGGTGATGAAACGTCGGCACAACCTCTTATTCC
TGGACGAGCCCTCGAACGATCTTGACGTGCAGACGCTGCGGGCGCTGGAG
GAGGCTCTGCGGGAGTTCCCCGGCTGCTCGGTCGTCATCTCGCACGACCG
CTGGTTCCTGGACCGCGTCTGTACCCATACCCTCGCTTTCGAGGGCGCTG
GTTCGGTGAAAATGTTCGCGGGGAACTATACGGAGTACGTCGCGCACAGG
GCGCAGCGAGGCCGAAAGAAGGGGCAAGAAGAGGAAGCGACTTAAAGGGT
GAAAAGGTTGAGCCTGAACGCGCAGTGCATGGAGTGAATGCCTCCAACGA
AAGATATGACATCTTTCCTCCATCATATTCAGCCAGCGAGAGAAACGTCA
GGTCGTCGGTGTCTGTTCACAGTAGTACCAAGTCGGCAAGCGGGCCACGA
AGATTTGTTATTCGATTGCTTTGCGGAAATAGCCTCCATTGTATTTTGAT
CACCACGCTATTCTTCGTAGCACCTTTATCCATTCACACATATAAATTCA
GTCTCTTCTTTTATGACCCATT

Coding sequence (CDS) from alignment at CM002463.1:979876..981947-

>rna4590 ID=rna4590|Name=rna4590|organism=Nannochloropsis gaditana|type=CDS|length=1779bp|location=Sequence derived from alignment at CM002463.1:979876..981947- (Nannochloropsis gaditana)
ATGCCCCCAATACTTCAACGTCTTGCAAAACTACGGCTTGCATTACCCAG
GTTAGGGCTTCAACATCGATATCGGCTATACTCTTGCCAAGGAGGCGGCT
CTAATCCCTCCAATGCGCCATCGACAGGAGAAATCATTTGTAGTTTGTCT
GACGTGACGAAAGTTTTACCTGGAGGCCGCGTGCTCCTGAAAGACACAAG
GCTATCCTTTTTCCGGGGGGCAAAAATCGGTGTCTTGGGCGTGAATGGCT
CTGGGAAGTCATCTCTATTAAAAATAATCAGTGGCGTGGACCAGGAGCAT
CACGGGGTGGTATGGCGGAAGCCAGATGTAAAGTTTATGTACCTTGCGCA
AGAGCCACAGCTCGACCCTGCGCTTGATGTGAAAGGAAACGTGAGATTGG
GCATCGCGGAGCAAGAGGCGCTAGTGCAGAAATTTGACGAAATTGCGATG
AAAATGGGGGAAACGGATGCGGATCTTGATAAGCTGTTGGAGGAGCAGGC
CGAGTTGCAAGGGCGGATCGAGGCTTTGGATTGCTGGAATGTGGAGCACC
GCGTTGATACTGTGATGAAAGCTCTACACTTACCTCCACCAGACGCTTCC
ATTATATCTTTATCAGGAGGAGAGCGGAGACGCGTAGCTCTATGCCGCAT
GTTATTGGAACAACCGGACGTGTTGCTTCTGGACGAGCCCACGAACCACC
TGGATGCGGACTCGGTGGCCTGGCTGGAGAGGTTTCTGCAAGAGTACAGA
GGGACGGTTATCGCGGTTACGCACGATCGATACTTCCTAGACAATATTGC
CCGGTGGGTGCTGGAGGTAGATCGAGGGTCGCTCCTTCCCTTCCAAGGCA
ACTACACACAGTGGCTGGAGCACAAAGCCGCTCGTCTGGACCTGGAGCGA
GGAAAAGAGGCAGCACAGGCTCGCGCTCTGCAGGCAGAGCTCGAGTGGAT
CCGTCTGCGGTCGAAGCAGGCGAGTAAGGCCAGAGTAAAGGCGGTGGAGG
TGCGCCGAATTGAGCAGCAGGGTCTTGCGGATAAGATTCACCAGTTGGAA
ACGGGCAAAATTGTCATCCCGCCGGGACCTCGGCTGGGCGATCGTGTCAT
GACGGTGGAAAATTTGAGCAAGCGCGTCTCGAGCAAGGTTCTGTTTGACA
ACGTGTCATTCGATTTGGAGGCGGGCGCGATTGTGGGGGTAATCGGAGCG
AACGGCTGCGGAAAGAGCACCTTGTTCAACGTGTTGTGCGGGCGGGCGGA
GCCAGACGCCGGGTCCGTGCAGATAGGCTCAACCGTGAGCTTGGGCCTGG
TCTCCCAGGTCCGCGACCAGGAGCTCGACGACAGGAAGAGCGTCTATGAG
GAGGTGGCGCAATCCGAGGACGTGATCGTTCTCGAGGGTCGAACGGTCCA
CACTCGCGCCTACCTGGCGGCCTTCAACCTGAAGGGTTCCATGCAGGAGA
AGCTCGTCGGCTCTCTCAGCGGGGGGGAACGGAACCGCGTGCACCTTGCC
AAGGTGATGAAACGTCGGCACAACCTCTTATTCCTGGACGAGCCCTCGAA
CGATCTTGACGTGCAGACGCTGCGGGCGCTGGAGGAGGCTCTGCGGGAGT
TCCCCGGCTGCTCGGTCGTCATCTCGCACGACCGCTGGTTCCTGGACCGC
GTCTGTACCCATACCCTCGCTTTCGAGGGCGCTGGTTCGGTGAAAATGTT
CGCGGGGAACTATACGGAGTACGTCGCGCACAGGGCGCAGCGAGGCCGAA
AGAAGGGGCAAGAAGAGGAAGCGACTTAA

Synonyms

Publications