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Properties
| Property Name | Value |
|---|
| Product | trna (cytosine -c )-methyltransferase |
| Orig transcript id | gnl|cribi|Naga_100014g58.9286.mrna |
| Orig protein id | gnl|cribi|Naga_100014g58.9286 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002463.1 | supercontig | CM002463.1:960401..963386 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4580 ID=rna4580|Name=rna4580|organism=Nannochloropsis gaditana|type=mRNA|length=1305bp
ATGAAATTCGGGAAGCAACTGGCCAAGGTGGTGGCACTTTCCGACCCGGA
ATGGGCGCCATTCTGGGTAAGCTACAAAGCGCTGAAGAAGCGTGTTAAGG
AGCTCACTGAGTCTCCCCCTGCTGCGACGCAGCCAAGGGACGCGGGCAGT
AGCATCAATCAGACTGGTCCCTCCACCAACACGGAGCCGAATCCTAAGGA
ACTGGCACAGAGCGCCGGAGAAGTAGCCTTCTTTCGGACTCTGCGCGCTG
AGGTTGCAAAGGCGTCAGAATTTTATCTGGGAATGGAGCAGCAGATGGGT
GCCAGACGCCGTCGAATCAAGTTGGGACTTCAATATTTGAAGCAGCCTAC
GACAGTGCTCGAGGACGATGCGTGGATCAAGATGGGCCGAGCGTGTATTT
CTCTTTACAAGGATCTGCTGCTTCTCGAAAACTTTGCTGTCATGAATTAT
TGTGCCTGCTCGAAAGCTTTGAAAAAACACGATAAGACGGTTGTGCTGGA
CACGCGATCACGCTTCATGCGCAACGTGGTAAATCAGCAGCCATTTACAC
ATTATCCTCGCCTCCTGGAAATGCTGCAGGAGATGGAGGAGATATTCAAG
GAGATCGACGCCTTGCAAGGAGACAAGGCGCGTCCCCTAGAAGAGGAAGA
GAGGCTCTTCCTGGAGGCTATTCGCGGCCTGAACCAGGAGGCATCCAGCA
TGCAACGAGAGGAAAAAGCGGACTTGGGAGGTGCATCAACGTCCGACCCC
GAACATTCTGCCGACGACCAGCCGGCTGCGAGAGACGCAGCCACCGCGGC
CGGTGCTGCTTGTCAGACGCACAGATCAGCTCCCGCGTCAGCTACTGTGG
TGCCGGAATTGGCATCAGGGGGGGATGCAGCTAGAGAAGAAATAGGGACA
GATGCCACTCCGGCTTCAAAGGTATCAGACGGGGACCCTAGCGTCACACC
GCCCACAGCGGCTGTGGCAGACGAAGTAGCAGAAACTGAAGGAGCAAATG
GGGGAAAACGCCGCCGGCTGTGTATATATGCCTCCTGGATACCCAAGCTA
GTCAAAAACATATGTATCCGGAAGACAAACTTTTATCACGTCATCAGTAA
GGACGCGCGTGAGTTAGTAAGAAGCCCGATAGCCCCTCTTGAATTGAAGA
GTTTAAGAAGCAAAAGCTGCCACCCAGCCAGCACGGTCACCGCGTCGCTA
CTCACAGACACGCACTTTGCAGCTATATATGTATTACAAAGAAAAAGAAC
ACGACAAAGCCATCGTGGTGCGTTTTCTATTTTTTTGGTATCACCCTCGA
CTTAA back to topprotein sequence of rna4580 >rna4580-protein ID=rna4580-protein|Name=rna4580|organism=Nannochloropsis gaditana|type=polypeptide|length=829bp
MGKGWRRKRQKKNHQNLEDKASGTGKSKRSVDGENVNGRGDGWIVARDPS
SGKNIVPGSPVFEAYYQAQSIVEPGVEWKKFMETLAMPLPASFRVNLDCD
FTEMLVNEIETHVARRIHVNGKEMAPIKRLEFFQGGHAYQMAIDRHTLRK
DSSLAEFHELMKTHTEAGTITRQETVSMIPPVVLGVQPHHKVLDMCAAPG
SKTSQMLETLSRGCSRTGQEPSGYIVANDSDTARAYMLVHQCRRINTVAL
CVTTHKAQLFPARGLGRKEPAVEAENPDWDVPRVALGYFDRILCDVPCSG
DGTVRKTFNIWRTWSPGQSLGLHPMQYVIARRGAALLKVGGLMVYSTCTL
NPIENEAVVLSLLQDSEGALELVDPRPLVPGLIVRPGLHSWRVMESTSRL
QANGHVAPDEEDQGAEGEQEVERTLRDSGLTLFRSYEDVPEPYRRWIRPS
CFPPKDPAVAERLKLHYCMRCLPHDQDTGGFFIALFKKTRPLPKPGAGKC
ADGGDAEGVLDVEEVVLETGKEKDSIEGRSMSSVDQGATSSSAAPDAETE
ASDYVVHDAPTSSVLTTPLQQEQQQAQKERRSQTRKTFVPKEFFVPLADD
GWASIKEFYGVKEGFPRDRLFLRRDGSKVVILLSQGLVEDVQLSTRCQLQ
LVNAGTRIFDRASTDRSACAYRLSQDGMPYMLPYLNKRVVQVGPTALAAM
TVYGYLDLDLLGPMQRPLLEDMEMGSFVAVLEPTCLAGVAKMMEAGIASF
ALMCWRGFGQKMNVMCIAHDLFIFQCRLKAARLVSEAQLVEMRETKSRLQ
LKHANAKGEGQNLKVTEDIEQACGKEMET back to topmRNA from alignment at CM002463.1:960401..963386+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4580 ID=rna4580|Name=rna4580|organism=Nannochloropsis gaditana|type=mRNA|length=2986bp|location=Sequence derived from alignment at CM002463.1:960401..963386+ (Nannochloropsis gaditana)
ACGTACTGCACGTGGCATCTCCTTCAAATActgccttttttccccccgtT
CCTGACGTGACAGGCGCATCTGCCCCCgaacctccccccggccccgcctc
gcccttcaAGTCGGGGGACATGGGCAAAGGGTGGCGGCGCaagaggcaga
agaagaacCATCAGAACCTGGAAGACAAAGCCTCTGGGACTGGGAAGAGT
AAAAGGAGTGTCGACGGTGAGAATGTCAATGGAAGAGGTGATGGCTGGAT
CGTCGCAAGGGATCCGAGCTCAGGAAAAAACATCGTCCCGGGCAGCCCTG
TCTTCGAAGCCTACTACCAGGCCCAGAGCATAGTTGAGCCCGGTGTGGAA
TGGAAGAAATTTATGGAGACTCTGGCCATGCCATTACCAGCATCATTTCG
AGTAAATTTGGATTGTGATTTTACTGAAATGCTTGTGAATGAGATCGAAA
CACACGTAGCCCGCCGCATTCATGTCAACGGCAAAGAAATGGCTCCTATC
AAGCGCCTTGAATTCTTTCAGGGAGGTCACGCCTACCAAATGGCCATCGA
TCGGCATACATTGCGGAAAGACTCGTCTCTTGCGGAATTCCATGAGCTCA
TGAAAACGCATACAGAGGCCGGCACCATCACGCGGCAAGAAACGGTGTCT
ATGATCCCACCCGTGGTCCTGGGCGTTCAGCCCCACCACAAGGTCCTGGA
TATGTGCGCGGCTCCTGGTTCGAAAACGTCGCAAATGCTTGAGACCCTTA
GCAGAGGATGTTCGCGCACGGGGCAGGAGCCGAGCGGGTACATCGTCGCC
AATGATTCGGACACGGCGCGGGCCTACATGCTAGTGCATCAATGCAGGCG
CATCAACACCGTGGCCCTCTGTGTCACAACCCATAAAGCGCAGCTATTTC
CAGCTCGAGGCTTGGGTAGAAAAGAGCCGGCTGTTGAGGCTGAAAACCCT
GACTGGGACGTGCCCCGGGTGGCGCTTGGATACTTCGACCGCATCCTCTG
TGACGTCCCCTGCAGTGGCGACGGCACCGTTCGCAAGACCTTCAATatct
ggaggacgtggtcgccGGGCCAGAGCTTGGGGCTTCATCCCATGCAATAT
GTGATCGCCCGACGGGGCGCAGCTCTCCTGAAAGTGGGTGGCCTCATGGT
GTACTCCACCTGCACGCTGAACCCGATCGAGAACGAGGCGgtggtcctct
ccctcctgcaggACAGCGAGGGAGCGCTCGAGCTGGTCGATCCTCGCCCG
CTCGTCCCGGGCCTTATAGTTCGGCCTGGCCTACATTCTTGGAGGGTCAT
GGAGTCCACAAGTCGGCTGCAAGCAAATGGACATGTTGCgccggacgagg
aagaccaAGGTGCtgagggggagcaggaggtagAAAGGACGCTGAGGGAC
TCCGGTTTGACGCTCTTTCGATCCTACGAGGATGTTCCAGAGCCCTACCG
CCGATGGATTCGAccctcttgcttccctcccaaaGATCCAGCTGTAGCAG
AGCGCCTTAAGTTGCACTACTGTATGCGCTGTCTGCCTCACGACCAGGAT
ACAGGCGGATTCTTCATCGCCCTTTTCAAAAAAACGAGGCCGCTACCTAA
GCCGGGAGCAGGGAAATGTGCTGACGGAGGAGATGCGGAGGGAGTTTTGG
ATGTTGAAGAGGTGGTTTTGGagacagggaaagaaaaagattCTATCGAG
GGTCGAAGCATGTCCTCGGTGGACCAAGGAGCGACatcttcctctgctgc
ccCAGACGCCGAGACCGAAGCGTCAGATTACGTGGTTCACGATGCTCCAA
CGTCTTCCGTCTTGACGACTCCGCTCCAGCAAGAACAGCAGCAAGCACAG
AAAGAGCGGAGAAGCCAAACACGGAAGACTTTTGTTCCTAAAGAATTTTT
CGTTCCATTGGCGGATGATGGATGGGCATCAATTAAAGAGTTTTACGGCG
TAAAAGAGGGATTTCCTCGCGATCGCCTCTTTTTGCGTCGGGATGGCTCG
AAAGTGGTAATCCTTCTTTCCCAAGGCTTagtggaggacgtgcagcTTTC
CACGCGTTGTCAGCTTCAACTTGTGAATGCGGGAACTCGTATTTTTGACC
GGGCGAGCACCGACCGTTCAGCGTGTGCTTACCGTCTTTCACAAGACGGA
ATGCCCTATATGCTTCCGTATTTAAATAAGCGCGTCGTCCAGGTTGGACC
GACGGCGCTGGCTGCCATGACAGTCTACGGCTATTTAGACTTGGATTTGC
TAGGGCCAATGCAACGGCCGCTGTTAGAGGATATGGAAATGGGTTCATTT
GTAGCCGTGCTGGAACCGACCTGTCTTGCAGGAGTAGCGAAAATGATGGA
AGCGGGTATCGCCAGCTTCGCACTCATGTGCTGGAGGGGCTTCGGGCAAA
AGATGAATGTCATGTGCATCGCACACGACCTCTTCATTTTCCAATGCCGC
CTGAAGGCCGCCAGGCTCGTCTCTGAAGCTCAGTTAGTCGAAATGCGCGA
GACGAAATCTCGCCTGCAACTAAAGCATGCGAATGCCAAGGGCGAAGGGC
AGAACTTGAAGGTAACGGAAGATATCGAGCAAGCTTGTGGAAAAGAGATG
GAGACTTAGATACTACGTGACTGATTGCGGGCGCATTTCAAATCTTAATA
CTTCACAAATGAGAGGTGAAAACGTTGCATCGGAACCACACAttcgcctc
ttctttctcggATCCATGCTTATAAGTGGGTTTAAAAGTAGGCTTTCAAA
GCTCGAGGTGTGTGATTTCAGTCAAGCAGATAAATTTGTCTTCCTgacgt
cgcttcctccattctCCATCTGAAATTCTTTTTAAAGTCAGTGCAATGAC
ACCTCTGAAAAATCCCTTCCAAACGACATCAAACGATACCTCACGAGACC
CGATACTTTGCATCTTCCAGATACAATGCAAACGGGTCAAGAGCGTAGCC
CTCCTCTACCACAGGGTCCTACGGCGGAATACTACC back to topCoding sequence (CDS) from alignment at CM002463.1:960401..963386+ >rna4580 ID=rna4580|Name=rna4580|organism=Nannochloropsis gaditana|type=CDS|length=2490bp|location=Sequence derived from alignment at CM002463.1:960401..963386+ (Nannochloropsis gaditana)
ATGGGCAAAGGGTGGCGGCGCaagaggcagaagaagaacCATCAGAACCT
GGAAGACAAAGCCTCTGGGACTGGGAAGAGTAAAAGGAGTGTCGACGGTG
AGAATGTCAATGGAAGAGGTGATGGCTGGATCGTCGCAAGGGATCCGAGC
TCAGGAAAAAACATCGTCCCGGGCAGCCCTGTCTTCGAAGCCTACTACCA
GGCCCAGAGCATAGTTGAGCCCGGTGTGGAATGGAAGAAATTTATGGAGA
CTCTGGCCATGCCATTACCAGCATCATTTCGAGTAAATTTGGATTGTGAT
TTTACTGAAATGCTTGTGAATGAGATCGAAACACACGTAGCCCGCCGCAT
TCATGTCAACGGCAAAGAAATGGCTCCTATCAAGCGCCTTGAATTCTTTC
AGGGAGGTCACGCCTACCAAATGGCCATCGATCGGCATACATTGCGGAAA
GACTCGTCTCTTGCGGAATTCCATGAGCTCATGAAAACGCATACAGAGGC
CGGCACCATCACGCGGCAAGAAACGGTGTCTATGATCCCACCCGTGGTCC
TGGGCGTTCAGCCCCACCACAAGGTCCTGGATATGTGCGCGGCTCCTGGT
TCGAAAACGTCGCAAATGCTTGAGACCCTTAGCAGAGGATGTTCGCGCAC
GGGGCAGGAGCCGAGCGGGTACATCGTCGCCAATGATTCGGACACGGCGC
GGGCCTACATGCTAGTGCATCAATGCAGGCGCATCAACACCGTGGCCCTC
TGTGTCACAACCCATAAAGCGCAGCTATTTCCAGCTCGAGGCTTGGGTAG
AAAAGAGCCGGCTGTTGAGGCTGAAAACCCTGACTGGGACGTGCCCCGGG
TGGCGCTTGGATACTTCGACCGCATCCTCTGTGACGTCCCCTGCAGTGGC
GACGGCACCGTTCGCAAGACCTTCAATatctggaggacgtggtcgccGGG
CCAGAGCTTGGGGCTTCATCCCATGCAATATGTGATCGCCCGACGGGGCG
CAGCTCTCCTGAAAGTGGGTGGCCTCATGGTGTACTCCACCTGCACGCTG
AACCCGATCGAGAACGAGGCGgtggtcctctccctcctgcaggACAGCGA
GGGAGCGCTCGAGCTGGTCGATCCTCGCCCGCTCGTCCCGGGCCTTATAG
TTCGGCCTGGCCTACATTCTTGGAGGGTCATGGAGTCCACAAGTCGGCTG
CAAGCAAATGGACATGTTGCgccggacgaggaagaccaAGGTGCtgaggg
ggagcaggaggtagAAAGGACGCTGAGGGACTCCGGTTTGACGCTCTTTC
GATCCTACGAGGATGTTCCAGAGCCCTACCGCCGATGGATTCGAccctct
tgcttccctcccaaaGATCCAGCTGTAGCAGAGCGCCTTAAGTTGCACTA
CTGTATGCGCTGTCTGCCTCACGACCAGGATACAGGCGGATTCTTCATCG
CCCTTTTCAAAAAAACGAGGCCGCTACCTAAGCCGGGAGCAGGGAAATGT
GCTGACGGAGGAGATGCGGAGGGAGTTTTGGATGTTGAAGAGGTGGTTTT
GGagacagggaaagaaaaagattCTATCGAGGGTCGAAGCATGTCCTCGG
TGGACCAAGGAGCGACatcttcctctgctgcccCAGACGCCGAGACCGAA
GCGTCAGATTACGTGGTTCACGATGCTCCAACGTCTTCCGTCTTGACGAC
TCCGCTCCAGCAAGAACAGCAGCAAGCACAGAAAGAGCGGAGAAGCCAAA
CACGGAAGACTTTTGTTCCTAAAGAATTTTTCGTTCCATTGGCGGATGAT
GGATGGGCATCAATTAAAGAGTTTTACGGCGTAAAAGAGGGATTTCCTCG
CGATCGCCTCTTTTTGCGTCGGGATGGCTCGAAAGTGGTAATCCTTCTTT
CCCAAGGCTTagtggaggacgtgcagcTTTCCACGCGTTGTCAGCTTCAA
CTTGTGAATGCGGGAACTCGTATTTTTGACCGGGCGAGCACCGACCGTTC
AGCGTGTGCTTACCGTCTTTCACAAGACGGAATGCCCTATATGCTTCCGT
ATTTAAATAAGCGCGTCGTCCAGGTTGGACCGACGGCGCTGGCTGCCATG
ACAGTCTACGGCTATTTAGACTTGGATTTGCTAGGGCCAATGCAACGGCC
GCTGTTAGAGGATATGGAAATGGGTTCATTTGTAGCCGTGCTGGAACCGA
CCTGTCTTGCAGGAGTAGCGAAAATGATGGAAGCGGGTATCGCCAGCTTC
GCACTCATGTGCTGGAGGGGCTTCGGGCAAAAGATGAATGTCATGTGCAT
CGCACACGACCTCTTCATTTTCCAATGCCGCCTGAAGGCCGCCAGGCTCG
TCTCTGAAGCTCAGTTAGTCGAAATGCGCGAGACGAAATCTCGCCTGCAA
CTAAAGCATGCGAATGCCAAGGGCGAAGGGCAGAACTTGAAGGTAACGGA
AGATATCGAGCAAGCTTGTGGAAAAGAGATGGAGACTTAG back to top
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