rna4575, rna4575 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4575
Unique Name	rna4575
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1958
Alignment location	CM002463.1:946619..948944 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100014g53.9300.mrna
Orig protein id	gnl\|cribi\|Naga_100014g53.9300
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:946619..948944 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100014g53	gene4414	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4575	rna4575-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26123.1	cds4563	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:946619..948944+
coding sequence from alignment at CM002463.1:946619..948944+

mRNA sequence

>rna4575 ID=rna4575|Name=rna4575|organism=Nannochloropsis gaditana|type=mRNA|length=1958bp
AAGCTTGGTCAAGACTAGTCATGACGGACGATGAGAGAGACGGTGATGCA
TCTGATGCGGCAGCGCGGCTGTTACAGAGGAAATTGCGCGCAAGCAATCA
ACGCGAGCTATATAAAGCGCTAAATGTGCCACCCTCAGCATCATCAGAAG
AGATCAGAGCGGCTTACTTGCGTGTGGCTTCCTCATATCATCCTGATCGG
GTGGACCCCCCCTTGCGAGAGGACTCTGAGGCCCAATTTTTAAAAATCGA
CAGGGCGTACAAAGTATTGACGGATCCTCTCATGCGCCAAGCATATGATA
AATTTGGAGAGCGCGGTTTACGTCTTCTCCAAGCCGTGCCACAACATGAA
ATGCTACCGCTTCGCTTCCCGTGTGAGGTGGCCTACATTTTAGAGGACCT
CTCTGCCGAGGAGATGCAGTACTCTGCATTGAGTGCTCAAGGCTCCTCAG
GTACAGTCACGGTGCACATGGAGATACCAAGACCTTTGCAGCCACCCCGT
TTGAAACAGTTGTCCGTGGAGCAGCAAGTGGAAGTCCCCTTGACCGGCGC
GACGAGTCTGTTCGCCGGGATCTTCGTGATCAACCGGAAGGCTGTGGGGA
TGGGGATGGGGTACGTGGGTGCACGCTTACAGCTCAGCAAAGCAACTTGG
GTATCCTGCACATATTTGCTCAGTCAGAAGAGAAAGCTTACCATAGAATC
TTCGCGGGAGCTCTCCGGTGCCGTGAACGTGCGAGCCTCTCTGTCCTGCG
CCGAGAACGGGAATCTCGGCCTGAAGTTGGCCTCCTCGCGGCGCATGAGC
GCGAGCTTGACGGGCACAGTGGACCTGACAGCAGGAAGTGGGGAGGATGA
GGCGATAGGCTTTGGATTGACGTCCTCTAATGGCAAGCGGGAGCTGACGG
GCCGGCTGCGAGTGTCGGACTCCGAGGTGGCAGTGAAGGGTATTTACGAA
AACCGCATCTCCAACGCCGTGCTCGTCAAGTGTGTAGGCAAGCTTGGCAC
CCGGGGCGTTGAGTGTCTCTTAGGGGCAACGCGGAACCTCTCCAGCCTGG
CGACAATCAACCTGGGTCTGGGCGTGGGAATGGACGGCGTGACAGTCAGC
ATCCAGGCCCGCAAGGGCCGTCACCACGTCCACGTCCCAATCAAGATCTC
TCCGCACCTCGATCCTTGGTCCGTCCTGGTTGGGAGCCTTCTGAGCGCGG
GACTTAATGCCGGCCTAGTGCTGCTCGTACGTCCCTTTGAGAAGGCTCGC
ATACAGCGACAGCTGCGGATGCTGGAGCGAGAGGTCTCGGAGAGACAGGC
CCGCGGGCGCCGGAACGCGGCAGCTCAGGTACGGCTCATGGCGGAGGCAT
CGATCCGCAAGACACAGGTGGAGAAACGTGCGATGAAGGGACTAGGCGGT
CTAGTCATCTTGGAGGCCCGCTATGGCACCTCCAGCATGCCGCAGAAGGC
CCCGCCAGACCCAGAGTGGTACCTGCTCAGCCGGGACAAGGAGCAGGCCC
TGGACCGGGCAACCGCCTTGGACGTGCGCGTTCCCTTGCAATTTTTTGTG
AACAAATCGAGGTTGCAGCTGCCGCCGGGTAGCAAGGCAGGCATGCTGGG
ATTCTACGACGTGAGCGCAAACCCCACCTGGCTCTACGACCCGTCCACGT
CCTCGGACGGCAGCGAGCCGGACAAGAGCTCAGCAACCGCCTTCCGGGCG
CCTCTGCGGCCTCCACGCCCACCTGAAGCTAAGACGAAGGCTCGAACGCG
CCTGTACGTGCGGTACAGCTACCTGGGAAAAGTGTACGAAGTTAGCGTGG
ATGATATCGAACCCCTTGAATTACCCCCGATGGACACGTCTCACACCTGC
TTGGGCACAGAGGGGCAAGTTAGGTAGTTGGCGTTGCTGCGATTGTTAGA
ATTCGCACGTAAATATACAAAGAAAATGGTTAGAGTGTCAATCACAACAT
GTAAAAGG

protein sequence of rna4575

>rna4575-protein ID=rna4575-protein|Name=rna4575|organism=Nannochloropsis gaditana|type=polypeptide|length=553bp
MESTAPLEPYPAPPLQAIDKEGFEYPPQPLPPAELFQSMLWYLRSKGQWT
GFSGGGAKLPTAARRSLEPAEKDLASALECVEEAMRDLLIVADLMHVARE
ERSFIGQDSLTNAHLSIGTPQVPVSYIAPEVIFEMKKRSMSHAANDMTSW
VKRMHETLQKGRRLTKTMAALRRTSRLQAGGLKAILTRPLSAGDPVSVLF
DTKQGPVALPLKIDASGIPHVSGRAGVEAEQEETGVAPSQPPTSCLRVYL
TDGAQGTSAECASWRPIDTGRVDGPGGLALSLQALEDEAYMGQVFESVRL
EVAAPAQPWVDRNIFPERDAVGDESSSIDGRHKTYDGLARLRPVGSPYQV
VEVSGEEVVVEVNPFHHLGIGFGSGLDGRPRLRPSRSDSLHRVCQLAFVR
LIELTSRRGKPFEEHEVQEDEYPEGILARLTVEVSHLLFVDRLVMLLDEL
VRTVKDPTVPTTLESWRWVTFPFSAPESHFVILGRKEDCEAEAFLIDIRV
TGTSVRVSYTFSRQGGKQNRTLSTDALSGLGDLKVYLERHLALRRPPSET
STK

mRNA from alignment at CM002463.1:946619..948944+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4575 ID=rna4575|Name=rna4575|organism=Nannochloropsis gaditana|type=mRNA|length=2326bp|location=Sequence derived from alignment at CM002463.1:946619..948944+ (Nannochloropsis gaditana)
ggaggttaccACGGAGCCGTGAAAACGTTTCAAGACGGGGGGTTCCGCAG
CCGAAGAGATGCAACTATCTGAACAGGGCGACAAGATATAAATGTTTCTT
CACTTTCAGTGCGAAATTGCTCTAAACCGTCTGACGTTGGACGCAGTCAC
GCGGATCATCTCCTCTCAGCGTCCCTCAGCATCGCCGACGATCAGGACAG
TAACATGGCAGGACTGACCAGTTTTTGATTGAATTTCCTCAGCACAGTGC
TTATAGCAACTGGGTAGGCACTGGAAGGGACTGTGATTATATTCGGCTCA
GGATATTGGGGCCCCTATCGACATCTGTAGTCTACTtgtgaggaggatgg
agagtaCAGCACCTCTCGAACCTTATCCTGCGCCACCTTTGCAAGCTATC
GACAAAGAGGGCTTTGAATACCCACCGCAGCCCCTACCTCCCGCAGAATT
GTTCCAATCAATGCTTTGGTATCTCCGTTCGAAAGGGCAATGGACAGGTT
tttcaggaggaggggcaaaacTACCCACTGCAGCCAGGAGGTCCTTGGAG
CCTGCAGAGAAAGACTTGGCTTCCGCGCTTGAATGTGTTGAGGAGGCAAT
GCGTGATCTGCTTATCGTCGCAGATTTGATGCACGTTGCGCGGGAAGAGC
GCTCTTTTATAGGGCAAGACAGCCTGACGAATGCTCATCTATCTATTGGC
ACTCCCCAAGTCCCCGTCTCATACATCGCGCCCGAAGTCATTTTTgaaat
gaagaaaagaagcatgTCACATGCTGCGAATGACATGACTTCATGGGTGA
AAAGAATGCATGAGACGCTTCAGaaaggccgccgcctcacAAAGACGATG
GCGGCTCTCCGTCGCACTTCGAGATTACAAGCAGGTGGGCTGAAAGCAAT
TTTGACCCGACCGCTATCAGCGGGAGATCCTGTTTCAGTGCTTTTCGATA
CCAAACAAGGCCCTGTTGCCCTTCCTTTGAAGATTGATGCTAGCGGAATC
CCGCATGTTTCAGGACGAGCCGGAGTGGAGGCTGAGCAGGAAGAAACGGG
GGtggctccctcccagccgccCACCAGCTGCCTGCGGGTCTACCTTACGG
ACGGCGCCCAAGGTACTTCCGCTGAGTGTGCATCCTGGCGGCCTATAGAT
ACGGGTAGAGTGGATGGCCCCGGTGGCCTGGCATTGTCTCTTCAAGCCTT
GGAAGACGAGGCCTACATGGGCCAGGTGTTCGAATCCGTTCGCCTTGAAG
TGGcggcccccgcccagccGTGGGTGGACAGGAATATTTTTCCAGAGCGA
GATGCTGTGGGGGACGAGTCATCTAGCATTGACGGGCGACACAAAACGTA
CGATGGACTAGCGAGGCTGCGCCCTGTGGGCTCGCCTTATCAGGTTGTTG
AGGTTTCAGGCGAGGAGGTCGTAGTTGAGGTGAACCCTTTCCACCACCTG
GGGATCGGTTTTGGCTCAGGATTGGATGGCCGTCCGCGGCTGCGGCCCTC
ACGGTCGGATTCTCTGCATAGAGTCTGCCAGCTGGCTTTTGTGCGTCTAA
TCGAGCTGACGTCGCGGCGGGGAAAACCGTTCGAAGAGCACGAGGTACAG
GAAGACGAGTATCCTGAGGGTATCCTGGCAAGACTTACAGTCGAagtctc
ccacctcctcttcgtggATAGACTGGTGATGCTTTTGGATGAGCTTGTGA
GAACGGTCAAGGATCCTACGGTCCCGACTACCCTGGAAAGCTGGCGCTGG
GtgaccttccctttctcggCGCCCGAGTCACATTTTGTCATTTTAGGCCG
GAAAGAGGATTGTGAAGCAGAGGCATTTCTCATTGATATTCGCGTTACCG
GCACTTCTGTACGGGTGTCTTACACGTTCAGCAGACAAGGTGGCAAACAA
AATCGCACCCTTAGCACAGATGCACTGTCCGGGCTTGGAGACTTGAAGGT
GTACCTTGAGCGGCATCTGGCACTCCGAAGGCCCCCATCAGAAACATCGA
CAAAGTAATACAAGGGACAGGGCCTCAGGTCGAGGAGACACGTCTATTAC
AAGTTACTTTAATTTATGTAATTAATGTGGTGCATTTACGCTCAGGATAA
TTTCTCAAAAGTCGTCCCAGTCGCTGGTCTTAGACGCCACAAGCTTCTTC
GCTTGCAGGCGTGACCGTCCCGTTCCGATTGCTTTCTTCGGTCCCGACTC
AGGCAGCGAAACAGACAATGGCGACGAGACAGCTGTACCATCTTTGATAG
ACAAAGGGATTTTCAGACTCGGTTGCATGGCCATTAGGTTGTGCTTTGAG
GGTGGAGCTGGGCTGGGATCGTTGAG

Coding sequence (CDS) from alignment at CM002463.1:946619..948944+

>rna4575 ID=rna4575|Name=rna4575|organism=Nannochloropsis gaditana|type=CDS|length=1662bp|location=Sequence derived from alignment at CM002463.1:946619..948944+ (Nannochloropsis gaditana)
atggagagtaCAGCACCTCTCGAACCTTATCCTGCGCCACCTTTGCAAGC
TATCGACAAAGAGGGCTTTGAATACCCACCGCAGCCCCTACCTCCCGCAG
AATTGTTCCAATCAATGCTTTGGTATCTCCGTTCGAAAGGGCAATGGACA
GGTTtttcaggaggaggggcaaaacTACCCACTGCAGCCAGGAGGTCCTT
GGAGCCTGCAGAGAAAGACTTGGCTTCCGCGCTTGAATGTGTTGAGGAGG
CAATGCGTGATCTGCTTATCGTCGCAGATTTGATGCACGTTGCGCGGGAA
GAGCGCTCTTTTATAGGGCAAGACAGCCTGACGAATGCTCATCTATCTAT
TGGCACTCCCCAAGTCCCCGTCTCATACATCGCGCCCGAAGTCATTTTTg
aaatgaagaaaagaagcatgTCACATGCTGCGAATGACATGACTTCATGG
GTGAAAAGAATGCATGAGACGCTTCAGaaaggccgccgcctcacAAAGAC
GATGGCGGCTCTCCGTCGCACTTCGAGATTACAAGCAGGTGGGCTGAAAG
CAATTTTGACCCGACCGCTATCAGCGGGAGATCCTGTTTCAGTGCTTTTC
GATACCAAACAAGGCCCTGTTGCCCTTCCTTTGAAGATTGATGCTAGCGG
AATCCCGCATGTTTCAGGACGAGCCGGAGTGGAGGCTGAGCAGGAAGAAA
CGGGGGtggctccctcccagccgccCACCAGCTGCCTGCGGGTCTACCTT
ACGGACGGCGCCCAAGGTACTTCCGCTGAGTGTGCATCCTGGCGGCCTAT
AGATACGGGTAGAGTGGATGGCCCCGGTGGCCTGGCATTGTCTCTTCAAG
CCTTGGAAGACGAGGCCTACATGGGCCAGGTGTTCGAATCCGTTCGCCTT
GAAGTGGcggcccccgcccagccGTGGGTGGACAGGAATATTTTTCCAGA
GCGAGATGCTGTGGGGGACGAGTCATCTAGCATTGACGGGCGACACAAAA
CGTACGATGGACTAGCGAGGCTGCGCCCTGTGGGCTCGCCTTATCAGGTT
GTTGAGGTTTCAGGCGAGGAGGTCGTAGTTGAGGTGAACCCTTTCCACCA
CCTGGGGATCGGTTTTGGCTCAGGATTGGATGGCCGTCCGCGGCTGCGGC
CCTCACGGTCGGATTCTCTGCATAGAGTCTGCCAGCTGGCTTTTGTGCGT
CTAATCGAGCTGACGTCGCGGCGGGGAAAACCGTTCGAAGAGCACGAGGT
ACAGGAAGACGAGTATCCTGAGGGTATCCTGGCAAGACTTACAGTCGAag
tctcccacctcctcttcgtggATAGACTGGTGATGCTTTTGGATGAGCTT
GTGAGAACGGTCAAGGATCCTACGGTCCCGACTACCCTGGAAAGCTGGCG
CTGGGtgaccttccctttctcggCGCCCGAGTCACATTTTGTCATTTTAG
GCCGGAAAGAGGATTGTGAAGCAGAGGCATTTCTCATTGATATTCGCGTT
ACCGGCACTTCTGTACGGGTGTCTTACACGTTCAGCAGACAAGGTGGCAA
ACAAAATCGCACCCTTAGCACAGATGCACTGTCCGGGCTTGGAGACTTGA
AGGTGTACCTTGAGCGGCATCTGGCACTCCGAAGGCCCCCATCAGAAACA
TCGACAAAGTAA

Synonyms

Publications