rna4574, rna4574 (mRNA) Nannochloropsis gaditana

Overview
Namerna4574
Unique Namerna4574
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length879
Alignment locationCM002463.1:944497..946454 -

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Properties
Property NameValue
ProductHeat shock protein DnaJ
Orig transcript idgnl|cribi|Naga_100014g52.9305.mrna
Orig protein idgnl|cribi|Naga_100014g52.9305
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:944497..946454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100014g52gene4413Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26128.1cds4562Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4574rna4574-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4574 ID=rna4574|Name=rna4574|organism=Nannochloropsis gaditana|type=mRNA|length=879bp
GATGGTCGTAGGGCTGCTTTTTCCGCGGTCGCATTAATTGGGTGGGAGCG
TGTTCGACCTTCTTGGTGCAATGTCGTCCCCCTGCTCCTTTCCTTACCCG
TTCCTCCTTGCCGGTGATGTATACCCGAAGTCAATTTCATTCACACTGTA
GACGCAACATTTCGACATCTTTTTAACACAGACACACTTCTTGCTAGCAC
AATGGGCCCTCCTCCTGCGGCTCCCGGTGAGATCAAGACTGTCGTACTTC
GTGCCGTCGGAGGCGAAGTGGGTTCAGCGTCTACACTGGCGCCCAAAGTA
GGCCCCCTCGGTCTGTCCCCCAAGAAGGTGGGCGAGGACATCCAAAAGGC
GACCATGGACTGGAAAGGGCTCAAGGTGACAGTGAAGCTGACCATCCAAA
ATCGTCAGGCTACGGTTTCACTGCTGCCCTCCGCCTCCTCGATGATCATT
CGGGCCTTAAAGGAGCCCCCGCGCGACCGGAAGAAGGAGAAGAACATTAA
GCACAGCGGGAACCTCACCATGGACGACATCATCAGCATCGCTCGCACCA
TGAGGCCTCGTTCTATGGCCCGCACATTGTCTGGCACAGTCAAAGAAATC
TTGGGAACGGCAAACTCAGTAGGATGCACGGTGCAGGGGGAGGCGCCTAC
GGAAATTCAATCCAAGATCGATTCGGGCGACATCACTATTCCAGATGAGT
AGAAGGAGGCCTGGGGCTCGGGAGCTTGCCAAAGGGATGAGGCCAATTGT
GTTTGTCAATTAGGATGCCGGAGGTCGGTTTCTTGCCTGGCGACAGGCCG
GAGTGCGCGTAGCTCTCGTCCACAGAGGGGTGTGTAAGGTGAAAAGAAAA
AATGAAAAGTCTTGGAAGCACATGTTGCC
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protein sequence of rna4574

>rna4574-protein ID=rna4574-protein|Name=rna4574|organism=Nannochloropsis gaditana|type=polypeptide|length=618bp
MTDDERDGDASDAAARLLQRKLRASNQRELYKALNVPPSASSEEIRAAYL
RVASSYHPDRVDPPLREDSEAQFLKIDRAYKVLTDPLMRQAYDKFGERGL
RLLQAVPQHEMLPLRFPCEVAYILEDLSAEEMQYSALSAQGSSGTVTVHM
EIPRPLQPPRLKQLSVEQQVEVPLTGATSLFAGIFVINRKAVGMGMGYVG
ARLQLSKATWVSCTYLLSQKRKLTIESSRELSGAVNVRASLSCAENGNLG
LKLASSRRMSASLTGTVDLTAGSGEDEAIGFGLTSSNGKRELTGRLRVSD
SEVAVKGIYENRISNAVLVKCVGKLGTRGVECLLGATRNLSSLATINLGL
GVGMDGVTVSIQARKGRHHVHVPIKISPHLDPWSVLVGSLLSAGLNAGLV
LLVRPFEKARIQRQLRMLEREVSERQARGRRNAAAQVRLMAEASIRKTQV
EKRAMKGLGGLVILEARYGTSSMPQKAPPDPEWYLLSRDKEQALDRATAL
DVRVPLQFFVNKSRLQLPPGSKAGMLGFYDVSANPTWLYDPSTSSDGSEP
DKSSATAFRAPLRPPRPPEAKTKARTRLYVRYSYLGKVYEVSVDDIEPLE
LPPMDTSHTCLGTEGQVR
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mRNA from alignment at CM002463.1:944497..946454-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4574 ID=rna4574|Name=rna4574|organism=Nannochloropsis gaditana|type=mRNA|length=1958bp|location=Sequence derived from alignment at CM002463.1:944497..946454- (Nannochloropsis gaditana)
AAGCTTGGTCAAGACTAGTCATGACGGACGATGAGAGAGACGGTGATGCA
TCTGATGCGGCAGCGCGGCTGTTACAGAGGAAATTGCGCGCAAGCAATCA
ACGCGAGCTATATAAAGCGCTAAATGTGCCACCCTCAGCATCATCAGAAG
AGATCAGAGCGGCTTACTTGCGTGTGGCTTCCTCATATCATCCTGATCGG
GTGGACCCCCCCTTGCGAGAGGACTCTGAGGCCCAATTTTTAAAAATCGA
CAGGGCGTACAAAGTATTGACGGATCCTCTCATGCGCCAAGCATATGATA
AATTTGGAGAGCGCGGTTTACGTCTTCTCCAAGCCGTGCCACAACATGAA
ATGCTACCGCTTCGCTTCCCGTGTGAGGTGGCCTACATTTTAGAGGACCT
CTCTGCCGAGGAGATGCAGTACTCTGCATTGAGTGCTCAAGGCTCCTCAG
GTACAGTCACGGTGCACATGGAGATACCAAGACCTTTGCAGCCACCCCGT
TTGAAACAGTTGTCCGTGGAGCAGCAAGTGGAAGTCCCCTTGACCGGCGC
GACGAGTCTGTTCGCCGGGATCTTCGTGATCAACCGGAAGGCTGTGGGGA
TGGGGATGGGGTACGTGGGTGCACGCTTACAGCTCAGCAAAGCAACTTGG
GTATCCTGCACATATTTGCTCAGTCAGAAGAGAAAGCTTACCATAGAATC
TTCGCGGGAGCTCTCCGGTGCCGTGAACGTGCGAGCCTCTCTGTCCTGCG
CCGAGAACGGGAATCTCGGCCTGAAGTTGGCCTCCTCGCGGCGCATGAGC
GCGAGCTTGACGGGCACAGTGGACCTGACAGCAGGAAGTGGGGAGGATGA
GGCGATAGGCTTTGGATTGACGTCCTCTAATGGCAAGCGGGAGCTGACGG
GCCGGCTGCGAGTGTCGGACTCCGAGGTGGCAGTGAAGGGTATTTACGAA
AACCGCATCTCCAACGCCGTGCTCGTCAAGTGTGTAGGCAAGCTTGGCAC
CCGGGGCGTTGAGTGTCTCTTAGGGGCAACGCGGAACCTCTCCAGCCTGG
CGACAATCAACCTGGGTCTGGGCGTGGGAATGGACGGCGTGACAGTCAGC
ATCCAGGCCCGCAAGGGCCGTCACCACGTCCACGTCCCAATCAAGATCTC
TCCGCACCTCGATCCTTGGTCCGTCCTGGTTGGGAGCCTTCTGAGCGCGG
GACTTAATGCCGGCCTAGTGCTGCTCGTACGTCCCTTTGAGAAGGCTCGC
ATACAGCGACAGCTGCGGATGCTGGAGCGAGAGGTCTCGGAGAGACAGGC
CCGCGGGCGCCGGAACGCGGCAGCTCAGGTACGGCTCATGGCGGAGGCAT
CGATCCGCAAGACACAGGTGGAGAAACGTGCGATGAAGGGACTAGGCGGT
CTAGTCATCTTGGAGGCCCGCTATGGCACCTCCAGCATGCCGCAGAAGGC
CCCGCCAGACCCAGAGTGGTACCTGCTCAGCCGGGACAAGGAGCAGGCCC
TGGACCGGGCAACCGCCTTGGACGTGCGCGTTCCCTTGCAATTTTTTGTG
AACAAATCGAGGTTGCAGCTGCCGCCGGGTAGCAAGGCAGGCATGCTGGG
ATTCTACGACGTGAGCGCAAACCCCACCTGGCTCTACGACCCGTCCACGT
CCTCGGACGGCAGCGAGCCGGACAAGAGCTCAGCAACCGCCTTCCGGGCG
CCTCTGCGGCCTCCACGCCCACCTGAAGCTAAGACGAAGGCTCGAACGCG
CCTGTACGTGCGGTACAGCTACCTGGGAAAAGTGTACGAAGTTAGCGTGG
ATGATATCGAACCCCTTGAATTACCCCCGATGGACACGTCTCACACCTGC
TTGGGCACAGAGGGGCAAGTTAGGTAGTTGGCGTTGCTGCGATTGTTAGA
ATTCGCACGTAAATATACAAAGAAAATGGTTAGAGTGTCAATCACAACAT
GTAAAAGG
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Coding sequence (CDS) from alignment at CM002463.1:944497..946454-

>rna4574 ID=rna4574|Name=rna4574|organism=Nannochloropsis gaditana|type=CDS|length=1857bp|location=Sequence derived from alignment at CM002463.1:944497..946454- (Nannochloropsis gaditana)
ATGACGGACGATGAGAGAGACGGTGATGCATCTGATGCGGCAGCGCGGCT
GTTACAGAGGAAATTGCGCGCAAGCAATCAACGCGAGCTATATAAAGCGC
TAAATGTGCCACCCTCAGCATCATCAGAAGAGATCAGAGCGGCTTACTTG
CGTGTGGCTTCCTCATATCATCCTGATCGGGTGGACCCCCCCTTGCGAGA
GGACTCTGAGGCCCAATTTTTAAAAATCGACAGGGCGTACAAAGTATTGA
CGGATCCTCTCATGCGCCAAGCATATGATAAATTTGGAGAGCGCGGTTTA
CGTCTTCTCCAAGCCGTGCCACAACATGAAATGCTACCGCTTCGCTTCCC
GTGTGAGGTGGCCTACATTTTAGAGGACCTCTCTGCCGAGGAGATGCAGT
ACTCTGCATTGAGTGCTCAAGGCTCCTCAGGTACAGTCACGGTGCACATG
GAGATACCAAGACCTTTGCAGCCACCCCGTTTGAAACAGTTGTCCGTGGA
GCAGCAAGTGGAAGTCCCCTTGACCGGCGCGACGAGTCTGTTCGCCGGGA
TCTTCGTGATCAACCGGAAGGCTGTGGGGATGGGGATGGGGTACGTGGGT
GCACGCTTACAGCTCAGCAAAGCAACTTGGGTATCCTGCACATATTTGCT
CAGTCAGAAGAGAAAGCTTACCATAGAATCTTCGCGGGAGCTCTCCGGTG
CCGTGAACGTGCGAGCCTCTCTGTCCTGCGCCGAGAACGGGAATCTCGGC
CTGAAGTTGGCCTCCTCGCGGCGCATGAGCGCGAGCTTGACGGGCACAGT
GGACCTGACAGCAGGAAGTGGGGAGGATGAGGCGATAGGCTTTGGATTGA
CGTCCTCTAATGGCAAGCGGGAGCTGACGGGCCGGCTGCGAGTGTCGGAC
TCCGAGGTGGCAGTGAAGGGTATTTACGAAAACCGCATCTCCAACGCCGT
GCTCGTCAAGTGTGTAGGCAAGCTTGGCACCCGGGGCGTTGAGTGTCTCT
TAGGGGCAACGCGGAACCTCTCCAGCCTGGCGACAATCAACCTGGGTCTG
GGCGTGGGAATGGACGGCGTGACAGTCAGCATCCAGGCCCGCAAGGGCCG
TCACCACGTCCACGTCCCAATCAAGATCTCTCCGCACCTCGATCCTTGGT
CCGTCCTGGTTGGGAGCCTTCTGAGCGCGGGACTTAATGCCGGCCTAGTG
CTGCTCGTACGTCCCTTTGAGAAGGCTCGCATACAGCGACAGCTGCGGAT
GCTGGAGCGAGAGGTCTCGGAGAGACAGGCCCGCGGGCGCCGGAACGCGG
CAGCTCAGGTACGGCTCATGGCGGAGGCATCGATCCGCAAGACACAGGTG
GAGAAACGTGCGATGAAGGGACTAGGCGGTCTAGTCATCTTGGAGGCCCG
CTATGGCACCTCCAGCATGCCGCAGAAGGCCCCGCCAGACCCAGAGTGGT
ACCTGCTCAGCCGGGACAAGGAGCAGGCCCTGGACCGGGCAACCGCCTTG
GACGTGCGCGTTCCCTTGCAATTTTTTGTGAACAAATCGAGGTTGCAGCT
GCCGCCGGGTAGCAAGGCAGGCATGCTGGGATTCTACGACGTGAGCGCAA
ACCCCACCTGGCTCTACGACCCGTCCACGTCCTCGGACGGCAGCGAGCCG
GACAAGAGCTCAGCAACCGCCTTCCGGGCGCCTCTGCGGCCTCCACGCCC
ACCTGAAGCTAAGACGAAGGCTCGAACGCGCCTGTACGTGCGGTACAGCT
ACCTGGGAAAAGTGTACGAAGTTAGCGTGGATGATATCGAACCCCTTGAA
TTACCCCCGATGGACACGTCTCACACCTGCTTGGGCACAGAGGGGCAAGT
TAGGTAG
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Synonyms
Publications